Wall clock time and date at job start Tue Mar 31 2020 20:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47283 * 2 1 4 4 C 1.36929 * 120.00186 * 275.31374 * 3 2 1 5 5 H 1.08001 * 120.00328 * 37.58050 * 4 3 2 6 6 C 1.38818 * 120.00319 * 217.57923 * 4 3 2 7 7 N 1.31621 * 119.99504 * 21.41897 * 6 4 3 8 8 Si 1.86797 * 120.00148 * 201.42557 * 6 4 3 9 9 H 1.48494 * 109.47336 * 59.99709 * 8 6 4 10 10 H 1.48498 * 109.46653 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47084 * 299.99348 * 8 6 4 12 12 C 1.46500 * 119.99833 * 95.31280 * 3 2 1 13 13 C 1.52997 * 109.47244 * 270.00220 * 12 3 2 14 14 N 1.46504 * 109.47582 * 179.97438 * 13 12 3 15 15 C 1.34773 * 119.99990 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00334 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99775 * 179.97438 * 15 14 13 18 18 N 1.46495 * 109.47345 * 180.02562 * 17 15 14 19 19 N 1.40309 * 126.32642 * 270.02986 * 18 17 15 20 20 C 1.28872 * 108.12290 * 180.35036 * 19 18 17 21 21 N 1.38118 * 108.89246 * 0.80119 * 20 19 18 22 22 C 1.34313 * 108.29355 * 358.29213 * 21 20 19 23 23 O 1.21818 * 126.32020 * 181.85244 * 22 21 20 24 24 C 1.46719 * 124.21586 * 177.64502 * 21 20 19 25 25 C 1.53282 * 108.65989 * 19.14000 * 24 21 20 26 26 C 1.53244 * 109.34776 * 308.24609 * 25 24 21 27 27 C 1.51116 * 127.46628 * 180.91781 * 20 19 18 28 28 H 1.08997 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46986 * 299.99345 * 1 2 3 30 30 H 1.08992 * 109.47524 * 59.99439 * 1 2 3 31 31 H 1.09005 * 109.46986 * 240.00655 * 2 1 3 32 32 H 1.09001 * 109.47676 * 120.00385 * 2 1 3 33 33 H 0.97001 * 119.99667 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47334 * 150.00171 * 12 3 2 35 35 H 1.09007 * 109.47274 * 30.00117 * 12 3 2 36 36 H 1.09007 * 109.47164 * 59.99932 * 13 12 3 37 37 H 1.09001 * 109.47424 * 300.00587 * 13 12 3 38 38 H 0.96994 * 119.99418 * 0.02562 * 14 13 12 39 39 H 1.09007 * 109.46737 * 60.00382 * 17 15 14 40 40 H 1.08999 * 109.47213 * 300.00323 * 17 15 14 41 41 H 1.09004 * 109.60275 * 259.38593 * 24 21 20 42 42 H 1.09001 * 109.60308 * 138.89457 * 24 21 20 43 43 H 1.09000 * 109.49096 * 188.28879 * 25 24 21 44 44 H 1.08991 * 109.49546 * 68.20707 * 25 24 21 45 45 H 1.08999 * 109.54787 * 310.91936 * 26 25 24 46 46 H 1.08999 * 109.62412 * 190.68065 * 26 25 24 47 47 H 1.09002 * 109.74725 * 78.16119 * 27 20 19 48 48 H 1.09000 * 109.75084 * 317.48215 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0633 -1.1807 5 1 1.4104 1.9280 -1.9626 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2796 -2.6584 9 1 1.9627 5.1786 -2.3343 10 1 4.3618 5.0614 -2.6660 11 1 2.8844 3.6727 -3.9966 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7381 1.8367 14 7 1.4974 3.3891 3.1003 15 6 0.5650 4.0764 3.7893 16 8 -0.5678 4.1557 3.3634 17 6 0.9298 4.7455 5.0894 18 7 -0.2484 5.4211 5.6383 19 7 -0.6396 6.7450 5.3874 20 6 -1.7189 6.9770 6.0523 21 7 -2.0583 5.8429 6.7638 22 6 -1.1615 4.8838 6.4812 23 8 -1.1682 3.7420 6.9058 24 6 -3.2049 5.7528 7.6748 25 6 -4.1850 6.8837 7.3429 26 6 -3.4314 8.2178 7.3192 27 6 -2.5224 8.2564 6.0833 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.0489 3.4031 -0.7830 34 1 3.1617 2.7640 1.0860 35 1 2.7256 1.2832 1.9721 36 1 0.3542 2.0067 2.0140 37 1 0.7903 3.4875 1.1279 38 1 2.4035 3.3259 3.4407 39 1 1.7189 5.4765 4.9129 40 1 1.2812 3.9955 5.7980 41 1 -2.8628 5.8556 8.7046 42 1 -3.6998 4.7902 7.5456 43 1 -4.9671 6.9213 8.1011 44 1 -4.6331 6.7017 6.3662 45 1 -2.8257 8.3106 8.2206 46 1 -4.1450 9.0405 7.2729 47 1 -3.1299 8.3319 5.1814 48 1 -1.8502 9.1121 6.1471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317488681.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:22 Heat of formation + Delta-G solvation = -1.428955 kcal Electronic energy + Delta-G solvation = -29491.263066 eV Core-core repulsion = 25389.728640 eV Total energy + Delta-G solvation = -4101.534426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.64225 -40.78750 -38.83177 -38.18619 -37.76913 -35.72305 -34.50598 -33.86005 -33.60931 -31.53053 -30.17775 -29.57590 -28.46795 -26.20933 -25.28150 -23.67151 -23.61343 -22.80900 -22.19923 -21.57728 -20.69179 -19.00137 -18.49577 -18.36171 -17.55457 -17.36332 -17.13789 -16.88737 -16.47256 -16.34976 -15.74311 -15.63387 -15.37685 -15.24214 -15.19164 -14.85758 -14.58348 -14.26078 -14.14998 -13.99508 -13.88106 -13.38432 -13.26947 -13.13096 -13.02514 -12.93260 -12.64010 -12.43624 -12.34948 -12.09378 -12.05212 -11.89648 -11.86263 -11.72554 -11.60466 -11.45575 -11.36018 -10.81020 -10.56494 -10.13513 -9.68026 -8.62280 -7.88165 -5.50950 0.56655 0.92271 1.42988 1.45500 1.45579 1.46905 1.53077 1.92260 2.21114 2.49222 3.19263 3.19545 3.53916 3.59098 3.74284 3.81573 3.84074 3.91844 4.07402 4.26372 4.32731 4.37394 4.38159 4.42088 4.44203 4.53569 4.68692 4.76960 4.78561 4.80072 4.86996 4.88083 4.99035 5.03973 5.05254 5.16482 5.16737 5.24125 5.33141 5.34300 5.51428 5.58374 5.63303 5.71187 6.41484 6.48199 6.52805 6.84590 7.10300 7.15476 7.79705 8.32675 9.08195 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.002471 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.197922 B =11326.919025 C =12071.048672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.274 4.274 5 H 0.050 0.950 6 C -0.027 4.027 7 N -0.909 5.909 8 Si 0.952 3.048 9 H -0.287 1.287 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.146 3.854 13 C 0.122 3.878 14 N -0.705 5.705 15 C 0.489 3.511 16 O -0.586 6.586 17 C 0.145 3.855 18 N -0.447 5.447 19 N -0.303 5.303 20 C 0.285 3.715 21 N -0.554 5.554 22 C 0.637 3.363 23 O -0.596 6.596 24 C 0.118 3.882 25 C -0.131 4.131 26 C -0.116 4.116 27 C -0.041 4.041 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.028 0.972 38 H 0.417 0.583 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.123 0.877 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.119 0.881 47 H 0.113 0.887 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 13.153 21.147 28.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.404 4.404 5 H 0.068 0.932 6 C -0.226 4.226 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.214 1.214 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.019 3.981 13 C -0.005 4.005 14 N -0.358 5.358 15 C 0.274 3.726 16 O -0.466 6.466 17 C 0.021 3.979 18 N -0.265 5.265 19 N -0.125 5.125 20 C 0.007 3.993 21 N -0.282 5.282 22 C 0.337 3.663 23 O -0.473 6.473 24 C -0.002 4.002 25 C -0.168 4.168 26 C -0.154 4.154 27 C -0.081 4.081 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.254 0.746 39 H 0.176 0.824 40 H 0.164 0.836 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.141 0.859 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.137 0.863 47 H 0.131 0.869 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.802 12.758 20.466 27.304 hybrid contribution 0.101 -0.270 -0.570 0.639 sum -12.701 12.488 19.896 26.704 Atomic orbital electron populations 1.22222 0.98254 1.00826 1.00173 1.21009 0.92960 0.85513 0.99377 1.43852 1.76377 1.09613 1.02047 1.19112 1.04487 1.22078 0.94734 0.93200 1.25770 0.93946 1.02752 1.00095 1.70072 1.03466 1.37894 1.43757 0.85593 0.76619 0.79888 0.79864 1.21406 1.21093 1.20006 1.20938 0.94146 0.96853 0.86205 1.21939 1.00071 0.95151 0.83301 1.45844 1.14040 1.52570 1.23317 1.21608 0.85144 0.78761 0.87084 1.90678 1.22687 1.62286 1.70985 1.21454 0.85174 0.98809 0.92505 1.48555 1.25103 1.09459 1.43409 1.76754 1.15194 0.96465 1.24039 1.25388 0.92361 0.92203 0.89388 1.46339 1.27722 1.11544 1.42579 1.16904 0.82139 0.84906 0.82389 1.91014 1.77642 1.16619 1.62047 1.22214 0.83604 1.02219 0.92162 1.22036 0.97512 0.92729 1.04565 1.21755 0.98825 0.98223 0.96557 1.20895 0.97036 0.87725 1.02412 0.91180 0.94519 0.94640 0.94225 0.92988 0.93540 0.90447 0.93482 0.94015 0.95373 0.74562 0.82353 0.83631 0.88356 0.90416 0.85860 0.91171 0.90101 0.86304 0.86926 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.92 10.21 71.98 0.73 -5.18 16 2 C 0.14 5.82 6.44 86.38 0.56 6.38 16 3 N -0.60 -29.85 2.43 -702.00 -1.71 -31.56 16 4 C -0.27 -15.12 9.45 84.04 0.79 -14.33 16 5 H 0.05 2.80 7.92 -2.91 -0.02 2.78 16 6 C -0.03 -1.50 4.95 84.86 0.42 -1.08 16 7 N -0.91 -51.13 11.47 21.65 0.25 -50.89 16 8 Si 0.95 44.77 29.60 68.60 2.03 46.80 16 9 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.15 6.63 5.45 86.38 0.47 7.10 16 13 C 0.12 5.26 6.00 86.38 0.52 5.77 16 14 N -0.70 -24.32 5.56 -463.05 -2.57 -26.89 16 15 C 0.49 17.80 7.90 87.66 0.69 18.50 16 16 O -0.59 -27.55 16.43 -3.04 -0.05 -27.60 16 17 C 0.15 3.92 6.87 85.63 0.59 4.51 16 18 N -0.45 -14.06 3.13 -481.56 -1.51 -15.56 16 19 N -0.30 -8.56 12.51 -49.05 -0.61 -9.17 16 20 C 0.28 6.07 7.73 137.72 1.06 7.13 16 21 N -0.55 -13.33 3.14 -643.89 -2.02 -15.35 16 22 C 0.64 21.31 8.65 179.01 1.55 22.86 16 23 O -0.60 -23.69 17.84 -4.73 -0.08 -23.78 16 24 C 0.12 1.72 6.87 86.43 0.59 2.32 16 25 C -0.13 -0.80 5.94 30.77 0.18 -0.62 16 26 C -0.12 -0.38 5.96 30.83 0.18 -0.20 16 27 C -0.04 -0.37 6.32 30.14 0.19 -0.18 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.04 1.44 6.64 -2.38 -0.02 1.42 16 30 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.04 1.72 8.08 -2.38 -0.02 1.70 16 32 H 0.05 2.02 7.83 -2.39 -0.02 2.00 16 33 H 0.26 13.84 8.31 -92.71 -0.77 13.06 16 34 H 0.08 3.92 5.52 -2.39 -0.01 3.90 16 35 H 0.05 1.95 7.86 -2.38 -0.02 1.93 16 36 H 0.04 1.88 6.64 -2.38 -0.02 1.86 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.42 11.21 8.47 -92.71 -0.79 10.42 16 39 H 0.16 3.10 8.14 -2.38 -0.02 3.08 16 40 H 0.15 3.21 8.12 -2.39 -0.02 3.19 16 41 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.07 0.59 8.10 -2.39 -0.02 0.57 16 45 H 0.08 0.23 8.11 -2.39 -0.02 0.21 16 46 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -85.90 395.20 2.45 -83.45 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.19 Total: 17.58 kcal Atomic # 6 Polarization: 44.42 SS G_CDS: 8.54 Total: 52.96 kcal Atomic # 7 Polarization: -141.25 SS G_CDS: -8.17 Total: -149.42 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.13 Total: -51.38 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -85.90 2.45 -83.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317488681.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.022 kcal (2) G-P(sol) polarization free energy of solvation -85.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds