Wall clock time and date at job start Tue Mar 31 2020 20:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46852 * 2 1 4 4 C 1.36935 * 120.00368 * 275.30799 * 3 2 1 5 5 H 1.08007 * 119.99431 * 37.57549 * 4 3 2 6 6 C 1.38806 * 120.00428 * 217.57956 * 4 3 2 7 7 N 1.31622 * 119.99741 * 21.42749 * 6 4 3 8 8 Si 1.86804 * 120.00295 * 201.42315 * 6 4 3 9 9 H 1.48490 * 109.46919 * 90.00038 * 8 6 4 10 10 H 1.48502 * 109.47264 * 210.00265 * 8 6 4 11 11 H 1.48501 * 109.47014 * 330.00114 * 8 6 4 12 12 C 1.46508 * 120.00054 * 95.30946 * 3 2 1 13 13 C 1.53001 * 109.46965 * 269.99838 * 12 3 2 14 14 N 1.46495 * 109.47190 * 179.97438 * 13 12 3 15 15 C 1.34773 * 120.00417 * 179.97438 * 14 13 12 16 16 O 1.21595 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.47525 * 120.00257 * 179.97438 * 15 14 13 18 18 C 1.36596 * 125.77121 * 180.30256 * 17 15 14 19 19 N 1.34813 * 106.84058 * 180.18658 * 18 17 15 20 20 C 1.46500 * 126.59887 * 179.85717 * 19 18 17 21 21 C 1.53181 * 109.54087 * 274.70989 * 20 19 18 22 22 C 1.53096 * 109.16287 * 176.84174 * 21 20 19 23 23 O 1.42895 * 109.41578 * 302.39025 * 22 21 20 24 24 C 1.42911 * 114.09685 * 61.16028 * 23 22 21 25 25 C 1.53093 * 109.41180 * 298.83769 * 24 23 22 26 26 N 1.40210 * 106.81069 * 359.59066 * 19 18 17 27 27 N 1.28765 * 108.36678 * 0.26018 * 26 19 18 28 28 H 1.08995 * 109.47311 * 299.99633 * 1 2 3 29 29 H 1.08993 * 109.46823 * 60.00153 * 1 2 3 30 30 H 1.09000 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46859 * 240.00089 * 2 1 3 32 32 H 1.09000 * 109.46712 * 119.99531 * 2 1 3 33 33 H 0.97003 * 119.99566 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46757 * 149.99701 * 12 3 2 35 35 H 1.09002 * 109.46909 * 29.99764 * 12 3 2 36 36 H 1.09000 * 109.47307 * 59.99795 * 13 12 3 37 37 H 1.09002 * 109.47247 * 299.99720 * 13 12 3 38 38 H 0.97005 * 120.00202 * 359.97438 * 14 13 12 39 39 H 1.07999 * 126.58014 * 0.04286 * 18 17 15 40 40 H 1.08991 * 109.54626 * 154.53357 * 20 19 18 41 41 H 1.09004 * 109.52313 * 56.94069 * 21 20 19 42 42 H 1.08999 * 109.57821 * 296.78483 * 21 20 19 43 43 H 1.08997 * 109.47537 * 182.40623 * 22 21 20 44 44 H 1.08997 * 109.47211 * 62.37610 * 22 21 20 45 45 H 1.08996 * 109.47957 * 58.82043 * 24 23 22 46 46 H 1.08997 * 109.48322 * 178.85602 * 24 23 22 47 47 H 1.08999 * 109.52271 * 297.70103 * 25 24 23 48 48 H 1.09006 * 109.57382 * 177.54320 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2796 -2.6585 9 1 2.5375 5.5069 -2.0395 10 1 4.4549 4.5697 -3.1909 11 1 2.2166 3.8358 -3.7671 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7383 1.8365 14 7 1.4971 3.3893 3.1001 15 6 0.5647 4.0767 3.7890 16 8 -0.5710 4.1561 3.3620 17 6 0.9217 4.7317 5.0617 18 6 0.0733 5.4500 5.8555 19 7 0.7940 5.8762 6.9121 20 6 0.3081 6.6884 8.0304 21 6 0.3762 8.1717 7.6539 22 6 -0.2065 9.0074 8.7966 23 8 -1.5491 8.5910 9.0530 24 6 -1.6695 7.2250 9.4554 25 6 -1.1457 6.3176 8.3392 26 7 2.0966 5.3875 6.7382 27 7 2.1355 4.7184 5.6387 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0491 3.4028 -0.7835 34 1 3.1616 2.7642 1.0860 35 1 2.7255 1.2834 1.9722 36 1 0.3540 2.0069 2.0138 37 1 0.7902 3.4877 1.1277 38 1 2.4030 3.3256 3.4410 39 1 -0.9733 5.6418 5.6709 40 1 0.9267 6.5065 8.9091 41 1 -0.2013 8.3438 6.7456 42 1 1.4142 8.4584 7.4854 43 1 -0.1998 10.0608 8.5165 44 1 0.3958 8.8659 9.6940 45 1 -1.0865 7.0602 10.3615 46 1 -2.7169 6.9943 9.6500 47 1 -1.7540 6.4523 7.4447 48 1 -1.1959 5.2772 8.6605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317489162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:55 Heat of formation + Delta-G solvation = 30.452074 kcal Electronic energy + Delta-G solvation = -28971.699908 eV Core-core repulsion = 24871.547948 eV Total energy + Delta-G solvation = -4100.151960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.41271 -39.98115 -38.92953 -36.26226 -35.85018 -34.05202 -32.01960 -31.85901 -31.83987 -31.06725 -29.50119 -27.55960 -25.99540 -24.57662 -24.29382 -23.40084 -22.65815 -21.63485 -20.64798 -20.39816 -20.09452 -18.36586 -17.01805 -16.79104 -16.51969 -16.17262 -15.81730 -15.59162 -15.35931 -15.09666 -14.98799 -14.68286 -14.31509 -14.28265 -13.78006 -13.69481 -13.42139 -13.15743 -12.64859 -12.45677 -12.35313 -12.22060 -12.14446 -12.01532 -11.80140 -11.57507 -11.46581 -11.08867 -11.07491 -10.75175 -10.60163 -10.51401 -10.46781 -10.37154 -10.07827 -9.91085 -9.82771 -9.63331 -9.38253 -8.53415 -8.40246 -6.59122 -5.79470 -3.38738 0.99284 1.71447 1.74909 3.18494 3.37762 3.44982 3.46143 3.48041 3.53077 3.70682 3.87476 4.09920 4.13137 4.20583 4.44364 4.48907 4.55295 4.62899 4.76318 4.83757 4.93093 4.96534 5.01439 5.10292 5.23840 5.31803 5.32258 5.45155 5.57970 5.73952 6.03104 6.15165 6.16312 6.20884 6.41640 6.45061 6.48104 6.55192 6.72256 6.88992 6.94831 7.05811 7.19899 7.59608 7.75902 7.84125 8.03036 8.51036 8.55050 9.18239 9.80290 10.38437 11.20497 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.002218 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.206203 B =12621.369216 C =13287.092123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.137 3.863 13 C 0.097 3.903 14 N -0.701 5.701 15 C 0.595 3.405 16 O -0.547 6.547 17 C -0.091 4.091 18 C 0.089 3.911 19 N -0.360 5.360 20 C 0.152 3.848 21 C -0.170 4.170 22 C 0.066 3.934 23 O -0.378 6.378 24 C 0.067 3.933 25 C -0.172 4.172 26 N -0.068 5.068 27 N -0.201 5.201 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.255 0.745 34 H 0.099 0.901 35 H 0.030 0.970 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.406 0.594 39 H 0.201 0.799 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.461 9.344 23.090 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.009 3.991 13 C -0.027 4.027 14 N -0.350 5.350 15 C 0.378 3.622 16 O -0.425 6.425 17 C -0.231 4.231 18 C -0.067 4.067 19 N -0.145 5.145 20 C 0.050 3.950 21 C -0.209 4.209 22 C -0.011 4.011 23 O -0.296 6.296 24 C -0.010 4.010 25 C -0.211 4.211 26 N -0.048 5.048 27 N -0.074 5.074 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.240 0.760 39 H 0.218 0.782 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.125 0.875 47 H 0.107 0.893 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.812 9.494 23.294 26.654 hybrid contribution -0.371 0.683 -0.788 1.107 sum -9.183 10.178 22.506 26.352 Atomic orbital electron populations 1.22392 0.99949 0.99049 1.01393 1.20880 0.91748 0.87001 0.98905 1.43612 1.76051 1.08261 1.02069 1.19021 1.04765 1.21319 0.93982 0.92049 1.25198 0.94182 1.01212 0.98137 1.69997 1.03153 1.37191 1.42448 0.86387 0.76908 0.82638 0.81450 1.21232 1.21724 1.20179 1.21069 0.94526 0.97070 0.86431 1.22536 1.01269 0.96580 0.82361 1.45962 1.13373 1.51701 1.24014 1.16799 0.85189 0.78609 0.81641 1.90786 1.20095 1.62369 1.69255 1.21692 0.90428 1.09724 1.01226 1.23256 1.00035 0.95937 0.87454 1.50620 1.09414 1.36981 1.17495 1.21602 0.96274 0.89854 0.87238 1.22720 1.04005 0.92818 1.01318 1.22590 0.83205 0.99193 0.96145 1.88009 1.26815 1.26684 1.88138 1.22567 1.02756 0.80899 0.94804 1.22725 0.93914 1.02132 1.02307 1.81988 0.96234 1.13303 1.13245 1.74664 1.19985 1.11006 1.01758 0.93646 0.93113 0.94491 0.93585 0.94708 0.93478 0.88299 0.95141 0.92736 0.91493 0.75984 0.78224 0.86752 0.89692 0.89215 0.87640 0.92307 0.92309 0.87507 0.89290 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.21 37.16 0.38 -2.76 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.96 16 3 N -0.58 -14.28 2.43 -173.23 -0.42 -14.70 16 4 C -0.26 -7.08 9.45 -15.06 -0.14 -7.23 16 5 H 0.06 1.68 7.92 -52.48 -0.42 1.26 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -25.19 11.47 55.49 0.64 -24.55 16 8 Si 0.90 21.71 29.61 -169.99 -5.03 16.68 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.14 3.13 5.45 -4.04 -0.02 3.11 16 13 C 0.10 2.04 6.00 -4.04 -0.02 2.02 16 14 N -0.70 -12.92 5.55 -61.35 -0.34 -13.26 16 15 C 0.59 10.71 7.82 -12.48 -0.10 10.61 16 16 O -0.55 -11.13 16.86 5.28 0.09 -11.04 16 17 C -0.09 -1.38 6.99 -83.55 -0.58 -1.96 16 18 C 0.09 1.03 10.39 -16.84 -0.17 0.85 16 19 N -0.36 -3.67 3.55 -54.39 -0.19 -3.87 16 20 C 0.15 0.96 3.32 -67.74 -0.23 0.73 16 21 C -0.17 -0.96 5.75 -26.59 -0.15 -1.11 16 22 C 0.07 0.29 6.84 37.21 0.25 0.55 16 23 O -0.38 -2.33 10.77 -35.23 -0.38 -2.71 16 24 C 0.07 0.26 6.84 37.21 0.25 0.52 16 25 C -0.17 -0.80 5.13 -26.59 -0.14 -0.94 16 26 N -0.07 -0.93 13.78 60.35 0.83 -0.09 16 27 N -0.20 -3.10 12.04 32.85 0.40 -2.70 16 28 H 0.04 0.85 6.64 -51.93 -0.34 0.51 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 34 H 0.10 2.55 5.52 -51.93 -0.29 2.27 16 35 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 36 H 0.05 1.14 6.64 -51.93 -0.34 0.79 16 37 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.41 6.98 8.16 -40.82 -0.33 6.65 16 39 H 0.20 1.78 7.25 -52.49 -0.38 1.40 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 0.45 7.07 -51.93 -0.37 0.08 16 48 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -33.01 393.82 -6.76 -39.76 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.49 Total: 2.92 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.78 Total: 7.62 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.91 Total: -59.18 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.29 Total: -13.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.01 -6.76 -39.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317489162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.215 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds