Wall clock time and date at job start Tue Mar 31 2020 20:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46852 * 2 1 4 4 C 1.36935 * 120.00368 * 275.30799 * 3 2 1 5 5 H 1.08007 * 119.99431 * 37.57549 * 4 3 2 6 6 C 1.38806 * 120.00428 * 217.57956 * 4 3 2 7 7 N 1.31622 * 119.99741 * 21.42749 * 6 4 3 8 8 Si 1.86804 * 120.00295 * 201.42315 * 6 4 3 9 9 H 1.48490 * 109.46919 * 90.00038 * 8 6 4 10 10 H 1.48502 * 109.47264 * 210.00265 * 8 6 4 11 11 H 1.48501 * 109.47014 * 330.00114 * 8 6 4 12 12 C 1.46508 * 120.00054 * 95.30946 * 3 2 1 13 13 C 1.53001 * 109.46965 * 269.99838 * 12 3 2 14 14 N 1.46495 * 109.47190 * 179.97438 * 13 12 3 15 15 C 1.34773 * 120.00417 * 179.97438 * 14 13 12 16 16 O 1.21595 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.47525 * 120.00257 * 179.97438 * 15 14 13 18 18 C 1.36596 * 125.77121 * 180.30256 * 17 15 14 19 19 N 1.34813 * 106.84058 * 180.18658 * 18 17 15 20 20 C 1.46500 * 126.59887 * 179.85717 * 19 18 17 21 21 C 1.53181 * 109.54087 * 274.70989 * 20 19 18 22 22 C 1.53096 * 109.16287 * 176.84174 * 21 20 19 23 23 O 1.42895 * 109.41578 * 302.39025 * 22 21 20 24 24 C 1.42911 * 114.09685 * 61.16028 * 23 22 21 25 25 C 1.53093 * 109.41180 * 298.83769 * 24 23 22 26 26 N 1.40210 * 106.81069 * 359.59066 * 19 18 17 27 27 N 1.28765 * 108.36678 * 0.26018 * 26 19 18 28 28 H 1.08995 * 109.47311 * 299.99633 * 1 2 3 29 29 H 1.08993 * 109.46823 * 60.00153 * 1 2 3 30 30 H 1.09000 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46859 * 240.00089 * 2 1 3 32 32 H 1.09000 * 109.46712 * 119.99531 * 2 1 3 33 33 H 0.97003 * 119.99566 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46757 * 149.99701 * 12 3 2 35 35 H 1.09002 * 109.46909 * 29.99764 * 12 3 2 36 36 H 1.09000 * 109.47307 * 59.99795 * 13 12 3 37 37 H 1.09002 * 109.47247 * 299.99720 * 13 12 3 38 38 H 0.97005 * 120.00202 * 359.97438 * 14 13 12 39 39 H 1.07999 * 126.58014 * 0.04286 * 18 17 15 40 40 H 1.08991 * 109.54626 * 154.53357 * 20 19 18 41 41 H 1.09004 * 109.52313 * 56.94069 * 21 20 19 42 42 H 1.08999 * 109.57821 * 296.78483 * 21 20 19 43 43 H 1.08997 * 109.47537 * 182.40623 * 22 21 20 44 44 H 1.08997 * 109.47211 * 62.37610 * 22 21 20 45 45 H 1.08996 * 109.47957 * 58.82043 * 24 23 22 46 46 H 1.08997 * 109.48322 * 178.85602 * 24 23 22 47 47 H 1.08999 * 109.52271 * 297.70103 * 25 24 23 48 48 H 1.09006 * 109.57382 * 177.54320 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2796 -2.6585 9 1 2.5375 5.5069 -2.0395 10 1 4.4549 4.5697 -3.1909 11 1 2.2166 3.8358 -3.7671 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7383 1.8365 14 7 1.4971 3.3893 3.1001 15 6 0.5647 4.0767 3.7890 16 8 -0.5710 4.1561 3.3620 17 6 0.9217 4.7317 5.0617 18 6 0.0733 5.4500 5.8555 19 7 0.7940 5.8762 6.9121 20 6 0.3081 6.6884 8.0304 21 6 0.3762 8.1717 7.6539 22 6 -0.2065 9.0074 8.7966 23 8 -1.5491 8.5910 9.0530 24 6 -1.6695 7.2250 9.4554 25 6 -1.1457 6.3176 8.3392 26 7 2.0966 5.3875 6.7382 27 7 2.1355 4.7184 5.6387 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0491 3.4028 -0.7835 34 1 3.1616 2.7642 1.0860 35 1 2.7255 1.2834 1.9722 36 1 0.3540 2.0069 2.0138 37 1 0.7902 3.4877 1.1277 38 1 2.4030 3.3256 3.4410 39 1 -0.9733 5.6418 5.6709 40 1 0.9267 6.5065 8.9091 41 1 -0.2013 8.3438 6.7456 42 1 1.4142 8.4584 7.4854 43 1 -0.1998 10.0608 8.5165 44 1 0.3958 8.8659 9.6940 45 1 -1.0865 7.0602 10.3615 46 1 -2.7169 6.9943 9.6500 47 1 -1.7540 6.4523 7.4447 48 1 -1.1959 5.2772 8.6605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317489162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:54 Heat of formation + Delta-G solvation = 7.145911 kcal Electronic energy + Delta-G solvation = -28972.710540 eV Core-core repulsion = 24871.547948 eV Total energy + Delta-G solvation = -4101.162592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.40551 -40.61073 -40.21357 -38.08715 -36.52683 -35.64969 -33.82248 -32.72462 -32.35962 -32.13866 -31.12303 -29.29544 -26.75364 -26.16751 -25.02782 -24.53244 -23.46035 -23.16994 -22.13461 -21.51005 -21.21798 -19.48047 -18.50205 -17.66627 -17.37307 -17.09789 -17.03386 -16.82916 -16.57335 -16.18594 -15.91454 -15.77329 -15.56618 -15.45572 -15.04176 -14.92510 -14.80775 -14.32082 -14.08651 -13.76623 -13.50412 -13.43313 -13.22242 -13.01445 -12.78944 -12.64549 -12.63828 -12.45675 -12.35541 -12.28390 -12.27353 -12.02230 -11.68171 -11.54390 -11.49944 -11.28826 -11.25174 -10.75031 -10.55163 -10.47999 -10.01425 -8.59824 -7.84895 -5.48372 0.04010 0.54400 0.91292 1.44114 1.48104 1.54937 2.09207 2.18842 2.50556 2.87557 3.06523 3.13134 3.22985 3.42167 3.58025 3.73792 3.78951 3.79140 3.86360 4.06476 4.14316 4.20726 4.31998 4.38028 4.46341 4.49089 4.53052 4.58458 4.66229 4.75934 4.76324 4.84090 4.86732 4.88099 4.94844 5.03822 5.10614 5.21158 5.31227 5.35700 5.36028 5.58930 5.66476 5.74913 6.17091 6.40469 6.47681 6.83279 7.08991 7.16158 7.83166 8.35840 9.10965 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.002218 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.206203 B =12621.369216 C =13287.092123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.596 5.596 4 C -0.268 4.268 5 H 0.056 0.944 6 C -0.032 4.032 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.290 1.290 10 H -0.291 1.291 11 H -0.268 1.268 12 C 0.144 3.856 13 C 0.121 3.879 14 N -0.702 5.702 15 C 0.598 3.402 16 O -0.574 6.574 17 C -0.118 4.118 18 C 0.111 3.889 19 N -0.342 5.342 20 C 0.143 3.857 21 C -0.165 4.165 22 C 0.068 3.932 23 O -0.398 6.398 24 C 0.066 3.934 25 C -0.167 4.167 26 N -0.081 5.081 27 N -0.223 5.223 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.253 0.747 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.411 0.589 39 H 0.228 0.772 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.118 0.882 47 H 0.086 0.914 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.784 9.871 24.952 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.010 3.990 3 N -0.318 5.318 4 C -0.398 4.398 5 H 0.073 0.927 6 C -0.230 4.230 7 N -0.556 5.556 8 Si 0.781 3.219 9 H -0.217 1.217 10 H -0.217 1.217 11 H -0.193 1.193 12 C 0.016 3.984 13 C -0.005 4.005 14 N -0.352 5.352 15 C 0.383 3.617 16 O -0.453 6.453 17 C -0.258 4.258 18 C -0.047 4.047 19 N -0.126 5.126 20 C 0.043 3.957 21 C -0.204 4.204 22 C -0.009 4.009 23 O -0.317 6.317 24 C -0.011 4.011 25 C -0.206 4.206 26 N -0.060 5.060 27 N -0.097 5.097 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.247 0.753 39 H 0.244 0.756 40 H 0.148 0.852 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.136 0.864 47 H 0.105 0.895 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.135 10.020 25.196 28.948 hybrid contribution -0.010 0.534 -1.241 1.352 sum -10.145 10.555 23.955 28.074 Atomic orbital electron populations 1.22212 0.97739 1.00914 1.00534 1.21027 0.93372 0.85322 0.99243 1.43850 1.76395 1.09676 1.01864 1.19187 1.04301 1.21624 0.94688 0.92684 1.25818 0.94038 1.03001 1.00146 1.70101 1.03611 1.37884 1.43971 0.85507 0.76749 0.80014 0.79651 1.21681 1.21696 1.19307 1.20908 0.94420 0.96742 0.86305 1.22022 1.00109 0.95576 0.82796 1.45842 1.13955 1.52037 1.23327 1.17081 0.84500 0.77876 0.82250 1.90760 1.21032 1.63310 1.70234 1.21369 0.91528 1.11861 1.01004 1.23576 1.00643 0.93906 0.86574 1.50913 1.08173 1.35821 1.17709 1.22082 0.97637 0.89654 0.86318 1.22693 1.03711 0.92451 1.01563 1.22663 0.82812 0.99234 0.96192 1.87990 1.27642 1.27811 1.88272 1.22713 1.03795 0.79714 0.94850 1.22740 0.92363 1.02828 1.02662 1.81901 0.97917 1.13507 1.12704 1.74640 1.20502 1.12005 1.02537 0.93885 0.94509 0.91223 0.94412 0.93160 0.93800 0.91104 0.93908 0.92458 0.94457 0.75316 0.75576 0.85225 0.90743 0.89604 0.86948 0.90639 0.90724 0.86359 0.89533 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 10.21 71.98 0.73 -4.83 16 2 C 0.14 5.66 6.44 86.38 0.56 6.21 16 3 N -0.60 -29.62 2.43 -701.98 -1.71 -31.33 16 4 C -0.27 -14.70 9.45 84.03 0.79 -13.90 16 5 H 0.06 3.04 7.92 -2.91 -0.02 3.02 16 6 C -0.03 -1.79 4.95 84.86 0.42 -1.37 16 7 N -0.91 -52.84 11.47 21.65 0.25 -52.60 16 8 Si 0.95 45.24 29.61 68.60 2.03 47.27 16 9 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.14 6.68 5.45 86.38 0.47 7.15 16 13 C 0.12 5.14 6.00 86.38 0.52 5.66 16 14 N -0.70 -26.27 5.55 -466.29 -2.59 -28.85 16 15 C 0.60 21.60 7.82 86.69 0.68 22.28 16 16 O -0.57 -23.32 16.86 -4.02 -0.07 -23.39 16 17 C -0.12 -3.50 6.99 40.82 0.29 -3.22 16 18 C 0.11 2.38 10.39 83.85 0.87 3.25 16 19 N -0.34 -6.38 3.55 -325.98 -1.16 -7.54 16 20 C 0.14 1.46 3.32 45.11 0.15 1.61 16 21 C -0.17 -1.56 5.75 30.69 0.18 -1.38 16 22 C 0.07 0.45 6.84 72.01 0.49 0.94 16 23 O -0.40 -3.95 10.77 -148.98 -1.60 -5.55 16 24 C 0.07 0.33 6.84 72.01 0.49 0.83 16 25 C -0.17 -1.11 5.13 30.68 0.16 -0.96 16 26 N -0.08 -2.11 13.78 37.02 0.51 -1.60 16 27 N -0.22 -6.85 12.04 -49.99 -0.60 -7.45 16 28 H 0.04 1.55 6.64 -2.39 -0.02 1.54 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 32 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 33 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.07 3.76 5.52 -2.39 -0.01 3.75 16 35 H 0.04 1.85 7.86 -2.39 -0.02 1.83 16 36 H 0.06 2.40 6.64 -2.39 -0.02 2.38 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.41 14.47 8.16 -92.70 -0.76 13.71 16 39 H 0.23 3.51 7.25 -2.91 -0.02 3.49 16 40 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 47 H 0.09 0.65 7.07 -2.39 -0.02 0.63 16 48 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -71.63 393.82 2.08 -69.55 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.22 Total: 19.22 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 6.80 Total: 22.27 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -5.30 Total: -129.37 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.67 Total: -28.94 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.63 2.08 -69.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317489162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.698 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds