Wall clock time and date at job start Tue Mar 31 2020 21:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37365 * 125.83068 * 2 1 4 4 N 1.29400 * 108.82789 * 179.97438 * 3 2 1 5 5 N 1.40166 * 108.14039 * 0.02562 * 4 3 2 6 6 C 1.46499 * 126.34864 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47198 * 270.02333 * 6 5 4 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 C 1.52999 * 109.46992 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47306 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.88465 * 305.69956 * 13 12 11 15 15 C 1.55164 * 111.00577 * 181.81979 * 13 12 11 16 16 C 1.54374 * 102.91948 * 206.45138 * 15 13 12 17 17 N 1.47019 * 107.28828 * 22.14166 * 16 15 13 18 18 C 1.36938 * 125.64642 * 181.05378 * 17 16 15 19 19 H 1.08004 * 119.99796 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00046 * 0.04318 * 18 17 16 21 21 N 1.31621 * 119.99852 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00111 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46689 * 59.99766 * 22 20 18 24 24 H 1.48496 * 109.46961 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47049 * 300.00200 * 22 20 18 26 26 C 1.47424 * 108.70599 * 1.08668 * 17 16 15 27 27 C 1.34814 * 125.83818 * 180.28845 * 2 1 3 28 28 O 1.21814 * 126.29734 * 0.03480 * 27 2 1 29 29 H 1.09000 * 109.47478 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47237 * 120.02101 * 1 2 3 31 31 H 1.08997 * 109.47427 * 240.02542 * 1 2 3 32 32 H 1.07998 * 125.58322 * 359.95946 * 3 2 1 33 33 H 1.09000 * 109.47602 * 150.02280 * 6 5 4 34 34 H 1.08998 * 109.47492 * 30.02269 * 6 5 4 35 35 H 1.09009 * 109.46730 * 59.99787 * 7 6 5 36 36 H 1.08998 * 109.46846 * 300.00332 * 7 6 5 37 37 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 38 38 H 1.08995 * 109.47421 * 299.99467 * 11 10 8 39 39 H 1.09001 * 109.47621 * 60.00103 * 11 10 8 40 40 H 1.09009 * 109.47378 * 299.99899 * 12 11 10 41 41 H 1.08993 * 109.47209 * 59.99808 * 12 11 10 42 42 H 1.08996 * 110.71523 * 324.78704 * 15 13 12 43 43 H 1.09003 * 110.71573 * 88.05800 * 15 13 12 44 44 H 1.08994 * 109.84692 * 262.73314 * 16 15 13 45 45 H 1.09004 * 110.02435 * 141.64689 * 16 15 13 46 46 H 0.97003 * 119.99824 * 180.02562 * 21 20 18 47 47 H 1.08993 * 110.37027 * 217.03447 * 26 17 16 48 48 H 1.09003 * 110.46000 * 94.75885 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5065 0.7353 0.0005 5 7 3.5344 -0.6661 0.0003 6 6 4.7313 -1.5108 0.0013 7 6 5.1497 -1.8041 -1.4409 8 6 6.3814 -2.6725 -1.4399 9 8 6.8761 -3.0220 -0.3891 10 7 6.9366 -3.0557 -2.6067 11 6 8.1374 -3.8949 -2.6056 12 6 8.5587 -4.1842 -4.0477 13 6 9.8124 -5.0612 -4.0467 14 1 10.6034 -4.6075 -3.4497 15 6 10.2978 -5.3391 -5.4940 16 6 11.0425 -6.6843 -5.3559 17 7 10.5298 -7.3454 -4.1469 18 6 10.9489 -8.5547 -3.6600 19 1 10.5072 -8.9569 -2.7602 20 6 11.9416 -9.2634 -4.3226 21 7 12.4797 -8.7733 -5.4193 22 14 12.5138 -10.9128 -3.6580 23 1 11.3665 -11.8549 -3.6173 24 1 13.5735 -11.4618 -4.5416 25 1 13.0555 -10.7331 -2.2871 26 6 9.4894 -6.4911 -3.5460 27 6 2.2543 -1.0929 -0.0055 28 8 1.8806 -2.2523 -0.0119 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5142 -0.8898 31 1 -0.3634 -0.5134 0.8902 32 1 1.9249 2.1373 -0.0006 33 1 4.5145 -2.4477 0.5144 34 1 5.5408 -0.9935 0.5163 35 1 5.3666 -0.8671 -1.9540 36 1 4.3403 -2.3215 -1.9559 37 1 6.5411 -2.7759 -3.4470 38 1 8.9437 -3.3749 -2.0886 39 1 7.9241 -4.8338 -2.0946 40 1 7.7522 -4.7045 -4.5645 41 1 8.7718 -3.2456 -4.5592 42 1 9.4507 -5.4355 -6.1730 43 1 10.9760 -4.5549 -5.8305 44 1 12.1130 -6.5060 -5.2552 45 1 10.8511 -7.3083 -6.2290 46 1 13.1732 -9.2687 -5.8825 47 1 9.5449 -6.5338 -2.4584 48 1 8.5006 -6.7981 -3.8870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317795020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:21 Heat of formation + Delta-G solvation = 29.034493 kcal Electronic energy + Delta-G solvation = -28013.760693 eV Core-core repulsion = 23913.547262 eV Total energy + Delta-G solvation = -4100.213431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.82557 -39.89553 -37.81267 -37.62619 -36.14269 -35.23152 -33.26425 -32.94071 -31.03315 -30.14923 -28.94167 -27.96436 -26.66710 -25.23015 -24.34963 -22.83841 -22.20167 -21.50141 -20.63696 -19.95933 -19.40996 -18.17820 -17.35065 -16.94823 -16.83549 -16.54021 -16.01301 -15.85961 -15.78527 -15.20320 -14.89964 -14.55874 -14.27972 -14.21680 -13.75066 -13.49697 -13.34843 -13.26176 -13.10976 -12.69184 -12.44170 -12.33831 -12.21976 -11.92866 -11.79825 -11.63293 -11.50856 -11.07090 -10.84086 -10.71653 -10.64548 -10.57157 -10.14991 -10.12567 -9.94301 -9.80356 -9.71967 -9.57176 -9.13229 -8.98604 -8.54276 -6.76647 -5.65612 -2.98594 1.31299 1.49699 2.26602 2.47653 2.63036 3.11478 3.44936 3.48734 3.50195 3.94895 4.24306 4.39387 4.47190 4.55168 4.63987 4.69184 4.77750 4.94261 4.95314 5.07268 5.11903 5.25008 5.31431 5.40651 5.49826 5.52675 5.63922 5.68895 5.76920 5.78934 5.90724 6.04644 6.08296 6.14347 6.23635 6.37517 6.42840 6.58891 6.63714 6.77774 7.01652 7.18121 7.33873 7.61993 7.63824 7.68618 7.88208 8.05843 8.32479 9.28453 9.88982 10.55475 11.46135 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.001573 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.011021 B =17795.005872 C =18283.921069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.563 5.563 3 C 0.252 3.748 4 N -0.280 5.280 5 N -0.451 5.451 6 C 0.177 3.823 7 C -0.160 4.160 8 C 0.518 3.482 9 O -0.539 6.539 10 N -0.727 5.727 11 C 0.117 3.883 12 C -0.116 4.116 13 C -0.101 4.101 14 H 0.076 0.924 15 C -0.138 4.138 16 C 0.177 3.823 17 N -0.607 5.607 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.924 5.924 22 Si 0.912 3.088 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.140 3.860 27 C 0.641 3.359 28 O -0.549 6.549 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.231 0.769 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.400 0.600 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.252 0.748 47 H 0.037 0.963 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.854 26.212 6.636 36.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.293 5.293 3 C -0.047 4.047 4 N -0.101 5.101 5 N -0.272 5.272 6 C 0.056 3.944 7 C -0.201 4.201 8 C 0.303 3.697 9 O -0.416 6.416 10 N -0.378 5.378 11 C -0.006 4.006 12 C -0.154 4.154 13 C -0.121 4.121 14 H 0.094 0.906 15 C -0.177 4.177 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.014 3.986 27 C 0.341 3.659 28 O -0.422 6.422 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.234 0.766 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -22.554 25.168 7.343 34.584 hybrid contribution -0.656 -0.858 -0.266 1.112 sum -23.210 24.310 7.077 34.347 Atomic orbital electron populations 1.21814 0.74088 1.04177 1.04065 1.45982 1.08963 1.06723 1.67612 1.25981 0.85872 0.94734 0.98125 1.77022 1.18166 0.92059 1.22897 1.49041 1.06237 1.03075 1.68848 1.21201 0.83333 0.93788 0.96118 1.22043 0.97290 1.01343 0.99448 1.20240 0.84843 0.80533 0.84054 1.90751 1.63531 1.56284 1.31070 1.46066 1.30175 1.53234 1.08347 1.21526 0.86076 0.94831 0.98193 1.21744 0.98765 1.00157 0.94758 1.22274 0.95667 0.95993 0.98131 0.90585 1.22907 0.99783 0.99993 0.94975 1.21143 0.96075 0.87839 0.89752 1.44477 1.41837 1.19758 1.27219 1.19040 1.15856 0.93677 1.06993 0.90530 1.24799 0.99132 0.99017 0.97635 1.69964 1.29833 1.38430 1.18918 0.86198 0.78100 0.83569 0.77896 1.21220 1.21619 1.21173 1.21607 0.92225 0.88561 0.96255 1.16823 0.82156 0.85144 0.81826 1.91123 1.77678 1.15175 1.58244 0.88816 0.90397 0.90420 0.75296 0.87660 0.87661 0.88068 0.88337 0.76613 0.91305 0.90816 0.91309 0.91670 0.92604 0.92351 0.93728 0.94089 0.93804 0.94461 0.96552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.25 11.08 59.85 0.66 0.91 16 2 N -0.56 -3.47 3.14 -130.11 -0.41 -3.88 16 3 C 0.25 1.04 12.61 -89.11 -1.12 -0.08 16 4 N -0.28 -2.17 12.53 29.87 0.37 -1.79 16 5 N -0.45 -4.39 3.63 -65.12 -0.24 -4.62 16 6 C 0.18 1.72 5.68 -4.04 -0.02 1.70 16 7 C -0.16 -1.37 6.02 -27.88 -0.17 -1.54 16 8 C 0.52 5.98 7.83 -10.98 -0.09 5.89 16 9 O -0.54 -8.39 15.98 5.55 0.09 -8.30 16 10 N -0.73 -7.49 5.56 -60.30 -0.33 -7.82 16 11 C 0.12 1.47 5.55 -4.04 -0.02 1.45 16 12 C -0.12 -1.44 4.84 -26.73 -0.13 -1.57 16 13 C -0.10 -1.70 3.04 -88.47 -0.27 -1.97 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.14 -2.54 6.43 -24.87 -0.16 -2.70 16 16 C 0.18 4.37 5.38 -3.04 -0.02 4.35 16 17 N -0.61 -15.96 3.39 -170.04 -0.58 -16.54 16 18 C -0.23 -6.55 10.28 -15.06 -0.15 -6.70 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.74 10.31 55.49 0.57 -27.17 16 22 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.14 2.93 6.03 -2.53 -0.02 2.92 16 27 C 0.64 6.86 8.60 -86.74 -0.75 6.11 16 28 O -0.55 -7.93 17.77 5.09 0.09 -7.83 16 29 H 0.09 -0.13 8.07 -51.93 -0.42 -0.55 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.23 -0.34 8.06 -52.49 -0.42 -0.76 16 33 H 0.11 1.17 8.07 -51.93 -0.42 0.75 16 34 H 0.11 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.40 2.94 8.47 -40.82 -0.35 2.59 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.08 7.59 -51.93 -0.39 0.69 16 40 H 0.07 0.84 8.03 -51.92 -0.42 0.42 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.95 8.04 -51.93 -0.42 0.54 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 45 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 46 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 48 H 0.02 0.35 7.95 -51.93 -0.41 -0.07 16 LS Contribution 398.67 15.07 6.01 6.01 Total: -1.00 -39.02 398.67 -9.58 -48.61 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.79 Total: -2.73 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -2.35 Total: 8.39 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.61 Total: -61.82 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.18 Total: -16.13 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -39.02 -9.58 -48.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317795020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.643 kcal (2) G-P(sol) polarization free energy of solvation -39.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds