Wall clock time and date at job start Tue Mar 31 2020 21:11:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.37365 * 125.83068 * 2 1
4 4 N 1.29400 * 108.82789 * 179.97438 * 3 2 1
5 5 N 1.40166 * 108.14039 * 0.02562 * 4 3 2
6 6 C 1.46499 * 126.34864 * 180.02562 * 5 4 3
7 7 C 1.53004 * 109.47198 * 270.02333 * 6 5 4
8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5
9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6
10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6
11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7
12 12 C 1.52999 * 109.46992 * 179.97438 * 11 10 8
13 13 C 1.52998 * 109.47306 * 180.02562 * 12 11 10
14 14 H 1.08999 * 110.88465 * 305.69956 * 13 12 11
15 15 C 1.55164 * 111.00577 * 181.81979 * 13 12 11
16 16 C 1.54374 * 102.91948 * 206.45138 * 15 13 12
17 17 N 1.47019 * 107.28828 * 22.14166 * 16 15 13
18 18 C 1.36938 * 125.64642 * 181.05378 * 17 16 15
19 19 H 1.08004 * 119.99796 * 180.02562 * 18 17 16
20 20 C 1.38810 * 120.00046 * 0.04318 * 18 17 16
21 21 N 1.31621 * 119.99852 * 359.97438 * 20 18 17
22 22 Si 1.86805 * 120.00111 * 179.97438 * 20 18 17
23 23 H 1.48505 * 109.46689 * 59.99766 * 22 20 18
24 24 H 1.48496 * 109.46961 * 179.97438 * 22 20 18
25 25 H 1.48503 * 109.47049 * 300.00200 * 22 20 18
26 26 C 1.47424 * 108.70599 * 1.08668 * 17 16 15
27 27 C 1.34814 * 125.83818 * 180.28845 * 2 1 3
28 28 O 1.21814 * 126.29734 * 0.03480 * 27 2 1
29 29 H 1.09000 * 109.47478 * 0.02562 * 1 2 3
30 30 H 1.09001 * 109.47237 * 120.02101 * 1 2 3
31 31 H 1.08997 * 109.47427 * 240.02542 * 1 2 3
32 32 H 1.07998 * 125.58322 * 359.95946 * 3 2 1
33 33 H 1.09000 * 109.47602 * 150.02280 * 6 5 4
34 34 H 1.08998 * 109.47492 * 30.02269 * 6 5 4
35 35 H 1.09009 * 109.46730 * 59.99787 * 7 6 5
36 36 H 1.08998 * 109.46846 * 300.00332 * 7 6 5
37 37 H 0.97000 * 119.99894 * 359.71837 * 10 8 7
38 38 H 1.08995 * 109.47421 * 299.99467 * 11 10 8
39 39 H 1.09001 * 109.47621 * 60.00103 * 11 10 8
40 40 H 1.09009 * 109.47378 * 299.99899 * 12 11 10
41 41 H 1.08993 * 109.47209 * 59.99808 * 12 11 10
42 42 H 1.08996 * 110.71523 * 324.78704 * 15 13 12
43 43 H 1.09003 * 110.71573 * 88.05800 * 15 13 12
44 44 H 1.08994 * 109.84692 * 262.73314 * 16 15 13
45 45 H 1.09004 * 110.02435 * 141.64689 * 16 15 13
46 46 H 0.97003 * 119.99824 * 180.02562 * 21 20 18
47 47 H 1.08993 * 110.37027 * 217.03447 * 26 17 16
48 48 H 1.09003 * 110.46000 * 94.75885 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2691 1.1137 0.0000
4 7 3.5065 0.7353 0.0005
5 7 3.5344 -0.6661 0.0003
6 6 4.7313 -1.5108 0.0013
7 6 5.1497 -1.8041 -1.4409
8 6 6.3814 -2.6725 -1.4399
9 8 6.8761 -3.0220 -0.3891
10 7 6.9366 -3.0557 -2.6067
11 6 8.1374 -3.8949 -2.6056
12 6 8.5587 -4.1842 -4.0477
13 6 9.8124 -5.0612 -4.0467
14 1 10.6034 -4.6075 -3.4497
15 6 10.2978 -5.3391 -5.4940
16 6 11.0425 -6.6843 -5.3559
17 7 10.5298 -7.3454 -4.1469
18 6 10.9489 -8.5547 -3.6600
19 1 10.5072 -8.9569 -2.7602
20 6 11.9416 -9.2634 -4.3226
21 7 12.4797 -8.7733 -5.4193
22 14 12.5138 -10.9128 -3.6580
23 1 11.3665 -11.8549 -3.6173
24 1 13.5735 -11.4618 -4.5416
25 1 13.0555 -10.7331 -2.2871
26 6 9.4894 -6.4911 -3.5460
27 6 2.2543 -1.0929 -0.0055
28 8 1.8806 -2.2523 -0.0119
29 1 -0.3634 1.0276 -0.0005
30 1 -0.3634 -0.5142 -0.8898
31 1 -0.3634 -0.5134 0.8902
32 1 1.9249 2.1373 -0.0006
33 1 4.5145 -2.4477 0.5144
34 1 5.5408 -0.9935 0.5163
35 1 5.3666 -0.8671 -1.9540
36 1 4.3403 -2.3215 -1.9559
37 1 6.5411 -2.7759 -3.4470
38 1 8.9437 -3.3749 -2.0886
39 1 7.9241 -4.8338 -2.0946
40 1 7.7522 -4.7045 -4.5645
41 1 8.7718 -3.2456 -4.5592
42 1 9.4507 -5.4355 -6.1730
43 1 10.9760 -4.5549 -5.8305
44 1 12.1130 -6.5060 -5.2552
45 1 10.8511 -7.3083 -6.2290
46 1 13.1732 -9.2687 -5.8825
47 1 9.5449 -6.5338 -2.4584
48 1 8.5006 -6.7981 -3.8870
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001317795020.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:11:21
Heat of formation + Delta-G solvation = 29.034493 kcal
Electronic energy + Delta-G solvation = -28013.760693 eV
Core-core repulsion = 23913.547262 eV
Total energy + Delta-G solvation = -4100.213431 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.190 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-42.82557 -39.89553 -37.81267 -37.62619 -36.14269 -35.23152 -33.26425 -32.94071
-31.03315 -30.14923 -28.94167 -27.96436 -26.66710 -25.23015 -24.34963 -22.83841
-22.20167 -21.50141 -20.63696 -19.95933 -19.40996 -18.17820 -17.35065 -16.94823
-16.83549 -16.54021 -16.01301 -15.85961 -15.78527 -15.20320 -14.89964 -14.55874
-14.27972 -14.21680 -13.75066 -13.49697 -13.34843 -13.26176 -13.10976 -12.69184
-12.44170 -12.33831 -12.21976 -11.92866 -11.79825 -11.63293 -11.50856 -11.07090
-10.84086 -10.71653 -10.64548 -10.57157 -10.14991 -10.12567 -9.94301 -9.80356
-9.71967 -9.57176 -9.13229 -8.98604 -8.54276 -6.76647 -5.65612 -2.98594
1.31299 1.49699 2.26602 2.47653 2.63036 3.11478 3.44936 3.48734
3.50195 3.94895 4.24306 4.39387 4.47190 4.55168 4.63987 4.69184
4.77750 4.94261 4.95314 5.07268 5.11903 5.25008 5.31431 5.40651
5.49826 5.52675 5.63922 5.68895 5.76920 5.78934 5.90724 6.04644
6.08296 6.14347 6.23635 6.37517 6.42840 6.58891 6.63714 6.77774
7.01652 7.18121 7.33873 7.61993 7.63824 7.68618 7.88208 8.05843
8.32479 9.28453 9.88982 10.55475 11.46135
Molecular weight = 337.19amu
Principal moments of inertia in cm(-1)
A = 0.026235 B = 0.001573 C = 0.001531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1067.011021 B =17795.005872 C =18283.921069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.101 3.899
2 N -0.563 5.563
3 C 0.252 3.748
4 N -0.280 5.280
5 N -0.451 5.451
6 C 0.177 3.823
7 C -0.160 4.160
8 C 0.518 3.482
9 O -0.539 6.539
10 N -0.727 5.727
11 C 0.117 3.883
12 C -0.116 4.116
13 C -0.101 4.101
14 H 0.076 0.924
15 C -0.138 4.138
16 C 0.177 3.823
17 N -0.607 5.607
18 C -0.227 4.227
19 H 0.077 0.923
20 C -0.010 4.010
21 N -0.924 5.924
22 Si 0.912 3.088
23 H -0.286 1.286
24 H -0.290 1.290
25 H -0.285 1.285
26 C 0.140 3.860
27 C 0.641 3.359
28 O -0.549 6.549
29 H 0.093 0.907
30 H 0.077 0.923
31 H 0.077 0.923
32 H 0.231 0.769
33 H 0.105 0.895
34 H 0.105 0.895
35 H 0.101 0.899
36 H 0.098 0.902
37 H 0.400 0.600
38 H 0.069 0.931
39 H 0.074 0.926
40 H 0.068 0.932
41 H 0.065 0.935
42 H 0.055 0.945
43 H 0.058 0.942
44 H 0.045 0.955
45 H 0.041 0.959
46 H 0.252 0.748
47 H 0.037 0.963
48 H 0.017 0.983
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.854 26.212 6.636 36.057
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.041 4.041
2 N -0.293 5.293
3 C -0.047 4.047
4 N -0.101 5.101
5 N -0.272 5.272
6 C 0.056 3.944
7 C -0.201 4.201
8 C 0.303 3.697
9 O -0.416 6.416
10 N -0.378 5.378
11 C -0.006 4.006
12 C -0.154 4.154
13 C -0.121 4.121
14 H 0.094 0.906
15 C -0.177 4.177
16 C 0.052 3.948
17 N -0.333 5.333
18 C -0.356 4.356
19 H 0.095 0.905
20 C -0.206 4.206
21 N -0.571 5.571
22 Si 0.742 3.258
23 H -0.212 1.212
24 H -0.216 1.216
25 H -0.212 1.212
26 C 0.014 3.986
27 C 0.341 3.659
28 O -0.422 6.422
29 H 0.112 0.888
30 H 0.096 0.904
31 H 0.096 0.904
32 H 0.247 0.753
33 H 0.123 0.877
34 H 0.123 0.877
35 H 0.119 0.881
36 H 0.117 0.883
37 H 0.234 0.766
38 H 0.087 0.913
39 H 0.092 0.908
40 H 0.087 0.913
41 H 0.083 0.917
42 H 0.074 0.926
43 H 0.076 0.924
44 H 0.063 0.937
45 H 0.059 0.941
46 H 0.062 0.938
47 H 0.055 0.945
48 H 0.034 0.966
Dipole moment (debyes) X Y Z Total
from point charges -22.554 25.168 7.343 34.584
hybrid contribution -0.656 -0.858 -0.266 1.112
sum -23.210 24.310 7.077 34.347
Atomic orbital electron populations
1.21814 0.74088 1.04177 1.04065 1.45982 1.08963 1.06723 1.67612
1.25981 0.85872 0.94734 0.98125 1.77022 1.18166 0.92059 1.22897
1.49041 1.06237 1.03075 1.68848 1.21201 0.83333 0.93788 0.96118
1.22043 0.97290 1.01343 0.99448 1.20240 0.84843 0.80533 0.84054
1.90751 1.63531 1.56284 1.31070 1.46066 1.30175 1.53234 1.08347
1.21526 0.86076 0.94831 0.98193 1.21744 0.98765 1.00157 0.94758
1.22274 0.95667 0.95993 0.98131 0.90585 1.22907 0.99783 0.99993
0.94975 1.21143 0.96075 0.87839 0.89752 1.44477 1.41837 1.19758
1.27219 1.19040 1.15856 0.93677 1.06993 0.90530 1.24799 0.99132
0.99017 0.97635 1.69964 1.29833 1.38430 1.18918 0.86198 0.78100
0.83569 0.77896 1.21220 1.21619 1.21173 1.21607 0.92225 0.88561
0.96255 1.16823 0.82156 0.85144 0.81826 1.91123 1.77678 1.15175
1.58244 0.88816 0.90397 0.90420 0.75296 0.87660 0.87661 0.88068
0.88337 0.76613 0.91305 0.90816 0.91309 0.91670 0.92604 0.92351
0.93728 0.94089 0.93804 0.94461 0.96552
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.25 11.08 59.85 0.66 0.91 16
2 N -0.56 -3.47 3.14 -130.11 -0.41 -3.88 16
3 C 0.25 1.04 12.61 -89.11 -1.12 -0.08 16
4 N -0.28 -2.17 12.53 29.87 0.37 -1.79 16
5 N -0.45 -4.39 3.63 -65.12 -0.24 -4.62 16
6 C 0.18 1.72 5.68 -4.04 -0.02 1.70 16
7 C -0.16 -1.37 6.02 -27.88 -0.17 -1.54 16
8 C 0.52 5.98 7.83 -10.98 -0.09 5.89 16
9 O -0.54 -8.39 15.98 5.55 0.09 -8.30 16
10 N -0.73 -7.49 5.56 -60.30 -0.33 -7.82 16
11 C 0.12 1.47 5.55 -4.04 -0.02 1.45 16
12 C -0.12 -1.44 4.84 -26.73 -0.13 -1.57 16
13 C -0.10 -1.70 3.04 -88.47 -0.27 -1.97 16
14 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
15 C -0.14 -2.54 6.43 -24.87 -0.16 -2.70 16
16 C 0.18 4.37 5.38 -3.04 -0.02 4.35 16
17 N -0.61 -15.96 3.39 -170.04 -0.58 -16.54 16
18 C -0.23 -6.55 10.28 -15.06 -0.15 -6.70 16
19 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16
20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16
21 N -0.92 -27.74 10.31 55.49 0.57 -27.17 16
22 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16
23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
26 C 0.14 2.93 6.03 -2.53 -0.02 2.92 16
27 C 0.64 6.86 8.60 -86.74 -0.75 6.11 16
28 O -0.55 -7.93 17.77 5.09 0.09 -7.83 16
29 H 0.09 -0.13 8.07 -51.93 -0.42 -0.55 16
30 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16
31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16
32 H 0.23 -0.34 8.06 -52.49 -0.42 -0.76 16
33 H 0.11 1.17 8.07 -51.93 -0.42 0.75 16
34 H 0.11 0.99 8.10 -51.93 -0.42 0.57 16
35 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16
36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16
37 H 0.40 2.94 8.47 -40.82 -0.35 2.59 16
38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
39 H 0.07 1.08 7.59 -51.93 -0.39 0.69 16
40 H 0.07 0.84 8.03 -51.92 -0.42 0.42 16
41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
42 H 0.06 0.95 8.04 -51.93 -0.42 0.54 16
43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16
44 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16
45 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16
46 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16
47 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16
48 H 0.02 0.35 7.95 -51.93 -0.41 -0.07 16
LS Contribution 398.67 15.07 6.01 6.01
Total: -1.00 -39.02 398.67 -9.58 -48.61
By element:
Atomic # 1 Polarization: 5.06 SS G_CDS: -7.79 Total: -2.73 kcal
Atomic # 6 Polarization: 10.74 SS G_CDS: -2.35 Total: 8.39 kcal
Atomic # 7 Polarization: -61.21 SS G_CDS: -0.61 Total: -61.82 kcal
Atomic # 8 Polarization: -16.31 SS G_CDS: 0.18 Total: -16.13 kcal
Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -39.02 -9.58 -48.61 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317795020.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.643 kcal
(2) G-P(sol) polarization free energy of solvation -39.025 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.619 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.609 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.034 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds