Wall clock time and date at job start Tue Mar 31 2020 21:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37365 * 125.83068 * 2 1 4 4 N 1.29400 * 108.82789 * 179.97438 * 3 2 1 5 5 N 1.40166 * 108.14039 * 0.02562 * 4 3 2 6 6 C 1.46499 * 126.34864 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47198 * 270.02333 * 6 5 4 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 C 1.52999 * 109.46992 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47306 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.88465 * 305.69956 * 13 12 11 15 15 C 1.55164 * 111.00577 * 181.81979 * 13 12 11 16 16 C 1.54374 * 102.91948 * 206.45138 * 15 13 12 17 17 N 1.47019 * 107.28828 * 22.14166 * 16 15 13 18 18 C 1.36938 * 125.64642 * 181.05378 * 17 16 15 19 19 H 1.08004 * 119.99796 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00046 * 0.04318 * 18 17 16 21 21 N 1.31621 * 119.99852 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00111 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46689 * 59.99766 * 22 20 18 24 24 H 1.48496 * 109.46961 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47049 * 300.00200 * 22 20 18 26 26 C 1.47424 * 108.70599 * 1.08668 * 17 16 15 27 27 C 1.34814 * 125.83818 * 180.28845 * 2 1 3 28 28 O 1.21814 * 126.29734 * 0.03480 * 27 2 1 29 29 H 1.09000 * 109.47478 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47237 * 120.02101 * 1 2 3 31 31 H 1.08997 * 109.47427 * 240.02542 * 1 2 3 32 32 H 1.07998 * 125.58322 * 359.95946 * 3 2 1 33 33 H 1.09000 * 109.47602 * 150.02280 * 6 5 4 34 34 H 1.08998 * 109.47492 * 30.02269 * 6 5 4 35 35 H 1.09009 * 109.46730 * 59.99787 * 7 6 5 36 36 H 1.08998 * 109.46846 * 300.00332 * 7 6 5 37 37 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 38 38 H 1.08995 * 109.47421 * 299.99467 * 11 10 8 39 39 H 1.09001 * 109.47621 * 60.00103 * 11 10 8 40 40 H 1.09009 * 109.47378 * 299.99899 * 12 11 10 41 41 H 1.08993 * 109.47209 * 59.99808 * 12 11 10 42 42 H 1.08996 * 110.71523 * 324.78704 * 15 13 12 43 43 H 1.09003 * 110.71573 * 88.05800 * 15 13 12 44 44 H 1.08994 * 109.84692 * 262.73314 * 16 15 13 45 45 H 1.09004 * 110.02435 * 141.64689 * 16 15 13 46 46 H 0.97003 * 119.99824 * 180.02562 * 21 20 18 47 47 H 1.08993 * 110.37027 * 217.03447 * 26 17 16 48 48 H 1.09003 * 110.46000 * 94.75885 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5065 0.7353 0.0005 5 7 3.5344 -0.6661 0.0003 6 6 4.7313 -1.5108 0.0013 7 6 5.1497 -1.8041 -1.4409 8 6 6.3814 -2.6725 -1.4399 9 8 6.8761 -3.0220 -0.3891 10 7 6.9366 -3.0557 -2.6067 11 6 8.1374 -3.8949 -2.6056 12 6 8.5587 -4.1842 -4.0477 13 6 9.8124 -5.0612 -4.0467 14 1 10.6034 -4.6075 -3.4497 15 6 10.2978 -5.3391 -5.4940 16 6 11.0425 -6.6843 -5.3559 17 7 10.5298 -7.3454 -4.1469 18 6 10.9489 -8.5547 -3.6600 19 1 10.5072 -8.9569 -2.7602 20 6 11.9416 -9.2634 -4.3226 21 7 12.4797 -8.7733 -5.4193 22 14 12.5138 -10.9128 -3.6580 23 1 11.3665 -11.8549 -3.6173 24 1 13.5735 -11.4618 -4.5416 25 1 13.0555 -10.7331 -2.2871 26 6 9.4894 -6.4911 -3.5460 27 6 2.2543 -1.0929 -0.0055 28 8 1.8806 -2.2523 -0.0119 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5142 -0.8898 31 1 -0.3634 -0.5134 0.8902 32 1 1.9249 2.1373 -0.0006 33 1 4.5145 -2.4477 0.5144 34 1 5.5408 -0.9935 0.5163 35 1 5.3666 -0.8671 -1.9540 36 1 4.3403 -2.3215 -1.9559 37 1 6.5411 -2.7759 -3.4470 38 1 8.9437 -3.3749 -2.0886 39 1 7.9241 -4.8338 -2.0946 40 1 7.7522 -4.7045 -4.5645 41 1 8.7718 -3.2456 -4.5592 42 1 9.4507 -5.4355 -6.1730 43 1 10.9760 -4.5549 -5.8305 44 1 12.1130 -6.5060 -5.2552 45 1 10.8511 -7.3083 -6.2290 46 1 13.1732 -9.2687 -5.8825 47 1 9.5449 -6.5338 -2.4584 48 1 8.5006 -6.7981 -3.8870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317795020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:20 Heat of formation + Delta-G solvation = 1.561519 kcal Electronic energy + Delta-G solvation = -28014.952011 eV Core-core repulsion = 23913.547262 eV Total energy + Delta-G solvation = -4101.404749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.39675 -40.86290 -39.41193 -38.41974 -36.83105 -36.36434 -34.76013 -33.83004 -32.53438 -31.12265 -30.51862 -28.54265 -27.99150 -26.67510 -25.54306 -23.67519 -23.17166 -22.19571 -21.83164 -21.61012 -20.75515 -18.89009 -18.81221 -17.99556 -17.66848 -17.23188 -16.89961 -16.87362 -16.70927 -16.56066 -16.30922 -15.59754 -15.51570 -15.36831 -14.80516 -14.45873 -14.31997 -14.03854 -13.89760 -13.82127 -13.64435 -13.46236 -13.34965 -13.20695 -13.06821 -12.88756 -12.79311 -12.65359 -12.39104 -12.23932 -12.05440 -11.80265 -11.57785 -11.39465 -11.37246 -11.32713 -11.16245 -10.87535 -10.70714 -10.10779 -9.66047 -8.89363 -7.86083 -5.21310 0.72856 1.10254 1.43071 1.46776 1.53137 1.55069 1.56322 2.09491 2.36571 2.48559 3.31305 3.45576 3.61847 3.66860 3.78274 3.88761 3.98070 4.00163 4.13749 4.16010 4.30822 4.32402 4.37540 4.38882 4.50534 4.62030 4.66289 4.69320 4.71209 4.77088 4.82744 4.91133 4.97126 5.00713 5.10254 5.13071 5.17268 5.25888 5.43127 5.43567 5.52822 5.70769 5.70795 5.79220 6.20472 6.51005 6.64244 6.94123 7.10520 7.20407 7.78594 8.42778 9.23919 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.001573 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.011021 B =17795.005872 C =18283.921069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.558 5.558 3 C 0.280 3.720 4 N -0.315 5.315 5 N -0.457 5.457 6 C 0.177 3.823 7 C -0.141 4.141 8 C 0.517 3.483 9 O -0.585 6.585 10 N -0.713 5.713 11 C 0.122 3.878 12 C -0.099 4.099 13 C -0.086 4.086 14 H 0.073 0.927 15 C -0.122 4.122 16 C 0.180 3.820 17 N -0.631 5.631 18 C -0.247 4.247 19 H 0.078 0.922 20 C -0.067 4.067 21 N -0.951 5.951 22 Si 0.979 3.021 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.133 3.867 27 C 0.623 3.377 28 O -0.601 6.601 29 H 0.143 0.857 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.290 0.710 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.418 0.582 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.007 0.993 45 H 0.004 0.996 46 H 0.247 0.753 47 H 0.031 0.969 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.951 29.494 6.231 39.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.136 5.136 5 N -0.277 5.277 6 C 0.055 3.945 7 C -0.182 4.182 8 C 0.304 3.696 9 O -0.465 6.465 10 N -0.365 5.365 11 C -0.002 4.002 12 C -0.137 4.137 13 C -0.106 4.106 14 H 0.091 0.909 15 C -0.160 4.160 16 C 0.055 3.945 17 N -0.357 5.357 18 C -0.376 4.376 19 H 0.095 0.905 20 C -0.260 4.260 21 N -0.600 5.600 22 Si 0.807 3.193 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.008 3.992 27 C 0.322 3.678 28 O -0.478 6.478 29 H 0.161 0.839 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.305 0.695 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.256 0.744 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.026 0.974 45 H 0.022 0.978 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -24.709 28.524 6.921 38.367 hybrid contribution -0.093 -1.805 -0.095 1.810 sum -24.801 26.719 6.826 37.089 Atomic orbital electron populations 1.22159 0.71860 1.07243 1.03484 1.46194 1.10188 1.05992 1.66195 1.27205 0.84401 0.96062 0.94043 1.77058 1.20324 0.90319 1.25937 1.49013 1.05721 1.04233 1.68688 1.21038 0.83606 0.93064 0.96769 1.21898 0.95681 1.01739 0.98892 1.20723 0.85214 0.80167 0.83537 1.90737 1.64962 1.58032 1.32775 1.45880 1.29318 1.52307 1.09012 1.21299 0.86752 0.94042 0.98112 1.21586 0.96570 1.00723 0.94795 1.22159 0.97765 0.94070 0.96559 0.90893 1.22770 1.00202 0.96632 0.96381 1.20965 0.94993 0.90569 0.87967 1.44832 1.42952 1.19868 1.28092 1.19436 1.16003 0.95080 1.07123 0.90459 1.25665 0.99540 1.02676 0.98124 1.70194 1.30145 1.39585 1.20029 0.85152 0.77553 0.79301 0.77327 1.20371 1.21673 1.20386 1.21827 0.91074 0.90488 0.95814 1.17178 0.82972 0.85528 0.82155 1.91063 1.78602 1.17485 1.60689 0.83881 0.90930 0.91178 0.69464 0.90111 0.87764 0.85554 0.87842 0.74439 0.92013 0.93337 0.90258 0.88280 0.90566 0.89827 0.97443 0.97794 0.94398 0.95072 0.95933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.22 11.08 127.77 1.42 1.64 16 2 N -0.56 -5.68 3.14 -683.70 -2.15 -7.83 16 3 C 0.28 1.29 12.61 179.82 2.27 3.56 16 4 N -0.32 -4.20 12.53 -59.41 -0.74 -4.94 16 5 N -0.46 -8.70 3.63 -478.03 -1.73 -10.43 16 6 C 0.18 3.54 5.68 86.38 0.49 4.03 16 7 C -0.14 -2.28 6.02 29.85 0.18 -2.10 16 8 C 0.52 11.58 7.83 87.66 0.69 12.27 16 9 O -0.58 -18.60 15.98 -3.04 -0.05 -18.65 16 10 N -0.71 -13.24 5.56 -463.07 -2.57 -15.82 16 11 C 0.12 2.89 5.55 86.38 0.48 3.37 16 12 C -0.10 -2.14 4.84 30.59 0.15 -1.99 16 13 C -0.09 -2.74 3.04 -9.40 -0.03 -2.77 16 14 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 15 C -0.12 -4.26 6.43 31.80 0.20 -4.05 16 16 C 0.18 9.14 5.38 86.75 0.47 9.60 16 17 N -0.63 -34.00 3.39 -691.90 -2.35 -36.35 16 18 C -0.25 -14.63 10.28 84.03 0.86 -13.77 16 19 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 21 N -0.95 -59.11 10.31 21.65 0.22 -58.89 16 22 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 26 C 0.13 5.58 6.03 86.86 0.52 6.11 16 27 C 0.62 13.26 8.60 178.99 1.54 14.80 16 28 O -0.60 -18.16 17.77 -4.71 -0.08 -18.24 16 29 H 0.14 -1.09 8.07 -2.39 -0.02 -1.11 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.29 -2.63 8.06 -2.91 -0.02 -2.65 16 33 H 0.08 1.97 8.07 -2.39 -0.02 1.95 16 34 H 0.10 2.04 8.10 -2.39 -0.02 2.02 16 35 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.42 4.74 8.47 -92.71 -0.79 3.95 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.41 7.59 -2.39 -0.02 1.39 16 40 H 0.08 1.63 8.03 -2.38 -0.02 1.61 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.01 0.42 7.38 -2.39 -0.02 0.40 16 45 H 0.00 0.22 7.50 -2.38 -0.02 0.20 16 46 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 47 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 48 H 0.02 0.94 7.95 -2.39 -0.02 0.92 16 Total: -1.00 -92.35 398.67 2.45 -89.90 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.17 Total: 4.40 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 9.70 Total: 27.18 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -9.32 Total: -134.25 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.13 Total: -36.89 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -92.35 2.45 -89.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317795020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.463 kcal (2) G-P(sol) polarization free energy of solvation -92.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds