Wall clock time and date at job start Tue Mar 31 2020 21:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37363 * 125.83702 * 2 1 4 4 N 1.29397 * 108.83400 * 179.72737 * 3 2 1 5 5 N 1.40170 * 108.13792 * 0.38264 * 4 3 2 6 6 C 1.46500 * 126.34761 * 179.87369 * 5 4 3 7 7 C 1.52999 * 109.47222 * 269.68644 * 6 5 4 8 8 C 1.50707 * 109.47161 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99413 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00226 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99818 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.46789 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46856 * 180.02562 * 12 11 10 14 14 H 1.09001 * 110.91988 * 51.09207 * 13 12 11 15 15 C 1.55157 * 111.00230 * 174.99947 * 13 12 11 16 16 C 1.54321 * 103.10033 * 153.66249 * 15 13 12 17 17 N 1.47019 * 107.27531 * 337.71659 * 16 15 13 18 18 C 1.36934 * 125.65046 * 178.97751 * 17 16 15 19 19 H 1.08001 * 119.99839 * 179.97438 * 18 17 16 20 20 C 1.38816 * 120.00199 * 359.97423 * 18 17 16 21 21 N 1.31622 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47000 * 60.00290 * 22 20 18 24 24 H 1.48504 * 109.47170 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47305 * 299.99926 * 22 20 18 26 26 C 1.47431 * 108.70142 * 358.94050 * 17 16 15 27 27 C 1.34815 * 125.83390 * 179.97438 * 2 1 3 28 28 O 1.21822 * 126.29998 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47064 * 270.02993 * 1 2 3 30 30 H 1.09004 * 109.47232 * 30.02935 * 1 2 3 31 31 H 1.08996 * 109.47337 * 150.02846 * 1 2 3 32 32 H 1.08000 * 125.57936 * 359.97143 * 3 2 1 33 33 H 1.09005 * 109.46781 * 149.69223 * 6 5 4 34 34 H 1.08993 * 109.47204 * 29.69152 * 6 5 4 35 35 H 1.08996 * 109.46711 * 60.00805 * 7 6 5 36 36 H 1.08993 * 109.47445 * 300.00360 * 7 6 5 37 37 H 0.96993 * 119.99531 * 0.02562 * 10 8 7 38 38 H 1.08993 * 109.47247 * 59.99881 * 11 10 8 39 39 H 1.09003 * 109.47089 * 299.99860 * 11 10 8 40 40 H 1.08995 * 109.46788 * 59.99852 * 12 11 10 41 41 H 1.08993 * 109.46922 * 299.99764 * 12 11 10 42 42 H 1.09002 * 110.72219 * 35.20946 * 15 13 12 43 43 H 1.09003 * 110.71618 * 272.11558 * 15 13 12 44 44 H 1.09001 * 109.88480 * 97.13771 * 16 15 13 45 45 H 1.09003 * 109.88132 * 218.14177 * 16 15 13 46 46 H 0.96993 * 119.99930 * 179.97438 * 21 20 18 47 47 H 1.08999 * 110.36190 * 142.96411 * 26 17 16 48 48 H 1.08998 * 110.36491 * 265.18090 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 0.0058 5 7 3.5344 -0.6662 0.0009 6 6 4.7313 -1.5109 0.0023 7 6 5.1487 -1.8063 -1.4398 8 6 6.3796 -2.6758 -1.4384 9 8 6.8740 -3.0252 -0.3874 10 7 6.9310 -3.0651 -2.6050 11 6 8.1272 -3.9108 -2.6035 12 6 8.5454 -4.2051 -4.0456 13 6 9.7944 -5.0888 -4.0441 14 1 9.6536 -5.9605 -3.4050 15 6 10.1773 -5.5128 -5.4867 16 6 11.6977 -5.7582 -5.3872 17 7 12.1869 -5.0019 -4.2252 18 6 13.4818 -4.9704 -3.7811 19 1 13.7411 -4.3809 -2.9141 20 6 14.4613 -5.6959 -4.4454 21 7 14.1451 -6.4147 -5.5017 22 14 16.2276 -5.6534 -3.8391 23 1 16.2852 -6.1646 -2.4461 24 1 17.0719 -6.5061 -4.7140 25 1 16.7298 -4.2564 -3.8750 26 6 11.0524 -4.2824 -3.6178 27 6 2.2542 -1.0930 0.0005 28 8 1.8804 -2.2524 0.0006 29 1 -0.3633 0.0005 1.0277 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 1.9250 2.1373 -0.0004 33 1 4.5147 -2.4472 0.5168 34 1 5.5410 -0.9929 0.5160 35 1 5.3653 -0.8702 -1.9542 36 1 4.3389 -2.3244 -1.9535 37 1 6.5358 -2.7854 -3.4454 38 1 7.9097 -4.8471 -2.0897 39 1 8.9372 -3.3937 -2.0890 40 1 8.7631 -3.2686 -4.5590 41 1 7.7357 -4.7220 -4.5604 42 1 9.9614 -4.7122 -6.1942 43 1 9.6568 -6.4274 -5.7708 44 1 11.8932 -6.8213 -5.2467 45 1 12.1899 -5.4078 -6.2945 46 1 14.8295 -6.9213 -5.9661 47 1 11.1467 -4.2733 -2.5320 48 1 10.9999 -3.2637 -4.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317795023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:27 Heat of formation + Delta-G solvation = 28.732566 kcal Electronic energy + Delta-G solvation = -27975.889640 eV Core-core repulsion = 23875.663116 eV Total energy + Delta-G solvation = -4100.226524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.83185 -39.89820 -37.78540 -37.63854 -36.14791 -35.23844 -33.26765 -32.94102 -31.04020 -30.15422 -28.93837 -27.96880 -26.67789 -25.22970 -24.34883 -22.83555 -22.18954 -21.50499 -20.64585 -19.96391 -19.42397 -18.18859 -17.35906 -16.95281 -16.83527 -16.53181 -16.07933 -15.85470 -15.77200 -15.12924 -14.96336 -14.57119 -14.29881 -14.21231 -13.76195 -13.50978 -13.30629 -13.27978 -13.12283 -12.68783 -12.45267 -12.32240 -12.21689 -11.92497 -11.79802 -11.63985 -11.50914 -11.08599 -10.84436 -10.72393 -10.65631 -10.58810 -10.15260 -10.12684 -9.93696 -9.80834 -9.72436 -9.57533 -9.13781 -8.99518 -8.54784 -6.77176 -5.66114 -2.99146 1.30704 1.49629 2.25209 2.47202 2.62659 3.11172 3.44352 3.48246 3.49623 3.96749 4.24874 4.38991 4.47666 4.54617 4.63578 4.66149 4.77091 4.94054 4.95044 5.06984 5.11288 5.25183 5.31521 5.39711 5.49655 5.52163 5.62735 5.68515 5.76162 5.80077 5.89833 6.04301 6.07882 6.13813 6.23130 6.37080 6.43014 6.58900 6.63229 6.77116 7.01216 7.17621 7.33448 7.61485 7.62497 7.68270 7.87790 8.05372 8.31892 9.27884 9.88435 10.55038 11.45659 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.001536 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.155933 B =18224.525931 C =18688.688811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.563 5.563 3 C 0.252 3.748 4 N -0.279 5.279 5 N -0.451 5.451 6 C 0.177 3.823 7 C -0.160 4.160 8 C 0.518 3.482 9 O -0.539 6.539 10 N -0.727 5.727 11 C 0.117 3.883 12 C -0.116 4.116 13 C -0.101 4.101 14 H 0.076 0.924 15 C -0.138 4.138 16 C 0.177 3.823 17 N -0.607 5.607 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.140 3.860 27 C 0.641 3.359 28 O -0.551 6.551 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.231 0.769 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.252 0.748 47 H 0.037 0.963 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.617 16.564 6.875 35.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.293 5.293 3 C -0.047 4.047 4 N -0.100 5.100 5 N -0.272 5.272 6 C 0.056 3.944 7 C -0.201 4.201 8 C 0.303 3.697 9 O -0.417 6.417 10 N -0.378 5.378 11 C -0.006 4.006 12 C -0.154 4.154 13 C -0.121 4.121 14 H 0.094 0.906 15 C -0.177 4.177 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.014 3.986 27 C 0.341 3.659 28 O -0.425 6.425 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.247 0.753 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.234 0.766 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -29.259 15.601 7.582 34.014 hybrid contribution -0.025 0.037 -0.285 0.288 sum -29.284 15.638 7.298 33.990 Atomic orbital electron populations 1.21833 0.74122 1.04795 1.03627 1.45967 1.08965 1.06713 1.67623 1.25968 0.85835 0.94786 0.98108 1.77043 1.18154 0.92018 1.22774 1.49044 1.06231 1.03106 1.68803 1.21200 0.83356 0.93759 0.96131 1.22036 0.97231 1.01400 0.99432 1.20243 0.84826 0.80547 0.84054 1.90752 1.63445 1.56401 1.31052 1.46064 1.30503 1.52899 1.08352 1.21527 0.86322 0.94557 0.98194 1.21738 0.98290 1.00631 0.94746 1.22352 0.93385 0.98161 0.98213 0.90565 1.22898 0.99961 0.99784 0.95034 1.21126 0.86566 0.96467 0.90614 1.44470 1.03639 1.54048 1.31131 1.19037 0.82727 1.24262 1.09584 0.90531 1.24801 0.98172 0.99675 0.97922 1.69962 1.32054 1.34069 1.21034 0.86196 0.84405 0.77347 0.77802 1.21180 1.21618 1.21215 1.21689 0.86856 0.93774 0.96268 1.16830 0.82180 0.85152 0.81760 1.91115 1.77687 1.15178 1.58472 0.90826 0.89249 0.89352 0.75280 0.87709 0.87618 0.88005 0.88388 0.76605 0.91326 0.90833 0.91282 0.91657 0.92628 0.92393 0.93725 0.94124 0.93793 0.94494 0.96539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.23 11.05 59.84 0.66 0.89 16 2 N -0.56 -3.42 3.14 -130.11 -0.41 -3.83 16 3 C 0.25 1.06 12.66 -89.12 -1.13 -0.07 16 4 N -0.28 -2.19 12.53 29.87 0.37 -1.81 16 5 N -0.45 -4.37 3.63 -65.12 -0.24 -4.61 16 6 C 0.18 1.71 5.68 -4.04 -0.02 1.69 16 7 C -0.16 -1.36 6.02 -27.88 -0.17 -1.53 16 8 C 0.52 5.95 7.83 -10.98 -0.09 5.86 16 9 O -0.54 -8.35 15.98 5.55 0.09 -8.26 16 10 N -0.73 -7.44 5.56 -60.29 -0.33 -7.78 16 11 C 0.12 1.47 5.58 -4.04 -0.02 1.45 16 12 C -0.12 -1.44 4.85 -26.73 -0.13 -1.57 16 13 C -0.10 -1.71 3.02 -88.21 -0.27 -1.97 16 14 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.14 -2.55 6.40 -24.90 -0.16 -2.70 16 16 C 0.18 4.37 5.37 -3.07 -0.02 4.36 16 17 N -0.61 -15.89 3.40 -169.76 -0.58 -16.47 16 18 C -0.23 -6.53 10.28 -15.06 -0.15 -6.69 16 19 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.68 10.31 55.49 0.57 -27.11 16 22 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.14 2.93 6.23 -2.26 -0.01 2.91 16 27 C 0.64 6.75 8.60 -86.73 -0.75 6.00 16 28 O -0.55 -7.75 17.71 5.08 0.09 -7.66 16 29 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.09 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.23 -0.30 8.06 -52.49 -0.42 -0.72 16 33 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.11 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.40 2.92 8.47 -40.82 -0.35 2.57 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.05 7.77 -51.93 -0.40 0.65 16 40 H 0.07 0.83 7.98 -51.93 -0.41 0.42 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 45 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 46 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.02 0.35 7.93 -51.93 -0.41 -0.07 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -38.78 398.97 -9.59 -48.37 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.80 Total: -2.68 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -2.35 Total: 8.26 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.61 Total: -61.60 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.18 Total: -15.93 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.78 -9.59 -48.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317795023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.102 kcal (2) G-P(sol) polarization free energy of solvation -38.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds