Wall clock time and date at job start Tue Mar 31 2020 21:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37363 * 125.83702 * 2 1 4 4 N 1.29397 * 108.83400 * 179.72737 * 3 2 1 5 5 N 1.40170 * 108.13792 * 0.38264 * 4 3 2 6 6 C 1.46500 * 126.34761 * 179.87369 * 5 4 3 7 7 C 1.52999 * 109.47222 * 269.68644 * 6 5 4 8 8 C 1.50707 * 109.47161 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99413 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00226 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99818 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.46789 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46856 * 180.02562 * 12 11 10 14 14 H 1.09001 * 110.91988 * 51.09207 * 13 12 11 15 15 C 1.55157 * 111.00230 * 174.99947 * 13 12 11 16 16 C 1.54321 * 103.10033 * 153.66249 * 15 13 12 17 17 N 1.47019 * 107.27531 * 337.71659 * 16 15 13 18 18 C 1.36934 * 125.65046 * 178.97751 * 17 16 15 19 19 H 1.08001 * 119.99839 * 179.97438 * 18 17 16 20 20 C 1.38816 * 120.00199 * 359.97423 * 18 17 16 21 21 N 1.31622 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47000 * 60.00290 * 22 20 18 24 24 H 1.48504 * 109.47170 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47305 * 299.99926 * 22 20 18 26 26 C 1.47431 * 108.70142 * 358.94050 * 17 16 15 27 27 C 1.34815 * 125.83390 * 179.97438 * 2 1 3 28 28 O 1.21822 * 126.29998 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47064 * 270.02993 * 1 2 3 30 30 H 1.09004 * 109.47232 * 30.02935 * 1 2 3 31 31 H 1.08996 * 109.47337 * 150.02846 * 1 2 3 32 32 H 1.08000 * 125.57936 * 359.97143 * 3 2 1 33 33 H 1.09005 * 109.46781 * 149.69223 * 6 5 4 34 34 H 1.08993 * 109.47204 * 29.69152 * 6 5 4 35 35 H 1.08996 * 109.46711 * 60.00805 * 7 6 5 36 36 H 1.08993 * 109.47445 * 300.00360 * 7 6 5 37 37 H 0.96993 * 119.99531 * 0.02562 * 10 8 7 38 38 H 1.08993 * 109.47247 * 59.99881 * 11 10 8 39 39 H 1.09003 * 109.47089 * 299.99860 * 11 10 8 40 40 H 1.08995 * 109.46788 * 59.99852 * 12 11 10 41 41 H 1.08993 * 109.46922 * 299.99764 * 12 11 10 42 42 H 1.09002 * 110.72219 * 35.20946 * 15 13 12 43 43 H 1.09003 * 110.71618 * 272.11558 * 15 13 12 44 44 H 1.09001 * 109.88480 * 97.13771 * 16 15 13 45 45 H 1.09003 * 109.88132 * 218.14177 * 16 15 13 46 46 H 0.96993 * 119.99930 * 179.97438 * 21 20 18 47 47 H 1.08999 * 110.36190 * 142.96411 * 26 17 16 48 48 H 1.08998 * 110.36491 * 265.18090 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 0.0058 5 7 3.5344 -0.6662 0.0009 6 6 4.7313 -1.5109 0.0023 7 6 5.1487 -1.8063 -1.4398 8 6 6.3796 -2.6758 -1.4384 9 8 6.8740 -3.0252 -0.3874 10 7 6.9310 -3.0651 -2.6050 11 6 8.1272 -3.9108 -2.6035 12 6 8.5454 -4.2051 -4.0456 13 6 9.7944 -5.0888 -4.0441 14 1 9.6536 -5.9605 -3.4050 15 6 10.1773 -5.5128 -5.4867 16 6 11.6977 -5.7582 -5.3872 17 7 12.1869 -5.0019 -4.2252 18 6 13.4818 -4.9704 -3.7811 19 1 13.7411 -4.3809 -2.9141 20 6 14.4613 -5.6959 -4.4454 21 7 14.1451 -6.4147 -5.5017 22 14 16.2276 -5.6534 -3.8391 23 1 16.2852 -6.1646 -2.4461 24 1 17.0719 -6.5061 -4.7140 25 1 16.7298 -4.2564 -3.8750 26 6 11.0524 -4.2824 -3.6178 27 6 2.2542 -1.0930 0.0005 28 8 1.8804 -2.2524 0.0006 29 1 -0.3633 0.0005 1.0277 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 1.9250 2.1373 -0.0004 33 1 4.5147 -2.4472 0.5168 34 1 5.5410 -0.9929 0.5160 35 1 5.3653 -0.8702 -1.9542 36 1 4.3389 -2.3244 -1.9535 37 1 6.5358 -2.7854 -3.4454 38 1 7.9097 -4.8471 -2.0897 39 1 8.9372 -3.3937 -2.0890 40 1 8.7631 -3.2686 -4.5590 41 1 7.7357 -4.7220 -4.5604 42 1 9.9614 -4.7122 -6.1942 43 1 9.6568 -6.4274 -5.7708 44 1 11.8932 -6.8213 -5.2467 45 1 12.1899 -5.4078 -6.2945 46 1 14.8295 -6.9213 -5.9661 47 1 11.1467 -4.2733 -2.5320 48 1 10.9999 -3.2637 -4.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317795023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:26 Heat of formation + Delta-G solvation = 1.637952 kcal Electronic energy + Delta-G solvation = -27977.064551 eV Core-core repulsion = 23875.663116 eV Total energy + Delta-G solvation = -4101.401435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.39666 -40.85891 -39.38064 -38.41466 -36.83042 -36.36265 -34.75100 -33.82881 -32.53329 -31.11963 -30.51044 -28.54051 -27.99214 -26.66419 -25.54193 -23.65707 -23.15827 -22.18970 -21.83208 -21.61960 -20.76161 -18.88367 -18.81202 -17.99582 -17.65990 -17.20381 -16.95956 -16.87983 -16.66971 -16.54235 -16.28777 -15.59824 -15.54634 -15.36618 -14.77363 -14.43688 -14.35515 -14.03746 -13.89586 -13.81190 -13.63815 -13.48801 -13.33603 -13.18567 -13.05098 -12.87075 -12.78955 -12.64490 -12.39172 -12.24543 -12.04894 -11.79832 -11.57896 -11.38893 -11.38044 -11.31794 -11.15640 -10.86712 -10.70029 -10.10720 -9.65847 -8.88695 -7.85372 -5.20613 0.73070 1.09914 1.43852 1.47618 1.53896 1.55147 1.56553 2.09428 2.36602 2.49338 3.32199 3.45806 3.62050 3.67269 3.78511 3.89283 3.97002 4.00044 4.13143 4.16477 4.29312 4.32707 4.37657 4.38285 4.54582 4.61896 4.66820 4.69597 4.71070 4.77615 4.83604 4.91877 4.96475 5.01251 5.10794 5.13172 5.17566 5.25571 5.43201 5.44378 5.53186 5.70289 5.70839 5.79396 6.20903 6.51110 6.64131 6.94168 7.11015 7.20487 7.79261 8.43616 9.24750 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.001536 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.155933 B =18224.525931 C =18688.688811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.558 5.558 3 C 0.280 3.720 4 N -0.316 5.316 5 N -0.457 5.457 6 C 0.177 3.823 7 C -0.141 4.141 8 C 0.517 3.483 9 O -0.585 6.585 10 N -0.713 5.713 11 C 0.122 3.878 12 C -0.099 4.099 13 C -0.086 4.086 14 H 0.070 0.930 15 C -0.122 4.122 16 C 0.181 3.819 17 N -0.631 5.631 18 C -0.247 4.247 19 H 0.079 0.921 20 C -0.068 4.068 21 N -0.951 5.951 22 Si 0.979 3.021 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.134 3.866 27 C 0.624 3.376 28 O -0.600 6.600 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.071 0.929 32 H 0.289 0.711 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.418 0.582 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.006 0.994 45 H 0.004 0.996 46 H 0.247 0.753 47 H 0.032 0.968 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.111 19.306 6.501 38.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.137 5.137 5 N -0.277 5.277 6 C 0.055 3.945 7 C -0.182 4.182 8 C 0.304 3.696 9 O -0.465 6.465 10 N -0.365 5.365 11 C -0.002 4.002 12 C -0.137 4.137 13 C -0.106 4.106 14 H 0.089 0.911 15 C -0.161 4.161 16 C 0.056 3.944 17 N -0.357 5.357 18 C -0.376 4.376 19 H 0.097 0.903 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.807 3.193 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.202 1.202 26 C 0.009 3.991 27 C 0.323 3.677 28 O -0.478 6.478 29 H 0.101 0.899 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.304 0.696 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.256 0.744 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.024 0.976 45 H 0.022 0.978 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -31.813 18.416 7.192 37.456 hybrid contribution 0.677 -0.717 -0.122 0.993 sum -31.136 17.699 7.070 36.506 Atomic orbital electron populations 1.22169 0.71853 1.06155 1.04735 1.46185 1.10199 1.05965 1.66222 1.27152 0.84391 0.96105 0.94086 1.77076 1.20338 0.90428 1.25862 1.49015 1.05772 1.04187 1.68694 1.21037 0.83567 0.93094 0.96783 1.21891 0.95748 1.01675 0.98873 1.20724 0.85195 0.80182 0.83536 1.90737 1.64877 1.58143 1.32755 1.45878 1.29585 1.52043 1.09015 1.21299 0.86600 0.94195 0.98075 1.21578 0.96704 1.00549 0.94822 1.22237 0.93559 0.98131 0.96694 0.91136 1.22759 0.95010 1.01774 0.96518 1.20939 0.90822 0.93902 0.88773 1.44823 1.04247 1.54714 1.31959 1.19447 0.84430 1.24059 1.09650 0.90320 1.25672 1.02320 0.99726 0.98336 1.70194 1.32855 1.34833 1.22153 0.85146 0.79324 0.77539 0.77292 1.20440 1.21787 1.20216 1.21914 0.87137 0.94299 0.95768 1.17161 0.82922 0.85538 0.82101 1.91059 1.78554 1.17361 1.60800 0.89891 0.84884 0.90988 0.69616 0.89885 0.88008 0.85832 0.87547 0.74439 0.92432 0.92895 0.89922 0.88628 0.90468 0.90099 0.97570 0.97759 0.94430 0.95009 0.95595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.19 11.05 127.77 1.41 1.60 16 2 N -0.56 -5.57 3.14 -683.69 -2.15 -7.71 16 3 C 0.28 1.38 12.66 179.82 2.28 3.65 16 4 N -0.32 -4.33 12.53 -59.42 -0.74 -5.08 16 5 N -0.46 -8.66 3.63 -478.01 -1.73 -10.40 16 6 C 0.18 3.52 5.68 86.38 0.49 4.01 16 7 C -0.14 -2.25 6.02 29.85 0.18 -2.07 16 8 C 0.52 11.50 7.83 87.66 0.69 12.19 16 9 O -0.58 -18.50 15.98 -3.05 -0.05 -18.55 16 10 N -0.71 -13.14 5.56 -463.05 -2.57 -15.71 16 11 C 0.12 2.88 5.58 86.38 0.48 3.36 16 12 C -0.10 -2.13 4.85 30.60 0.15 -1.98 16 13 C -0.09 -2.77 3.02 -9.23 -0.03 -2.79 16 14 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.12 -4.29 6.40 31.78 0.20 -4.09 16 16 C 0.18 9.15 5.37 86.73 0.47 9.62 16 17 N -0.63 -33.74 3.40 -691.01 -2.35 -36.08 16 18 C -0.25 -14.48 10.28 84.03 0.86 -13.61 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 20 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 21 N -0.95 -59.03 10.31 21.65 0.22 -58.81 16 22 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 26 C 0.13 5.53 6.23 87.02 0.54 6.07 16 27 C 0.62 12.98 8.60 178.99 1.54 14.52 16 28 O -0.60 -17.54 17.71 -4.74 -0.08 -17.62 16 29 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.13 -0.88 8.14 -2.38 -0.02 -0.90 16 31 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 32 H 0.29 -2.43 8.06 -2.91 -0.02 -2.45 16 33 H 0.08 1.97 8.07 -2.38 -0.02 1.95 16 34 H 0.10 2.04 8.10 -2.39 -0.02 2.02 16 35 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.42 4.69 8.47 -92.71 -0.79 3.91 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.48 7.77 -2.39 -0.02 1.47 16 40 H 0.08 1.64 7.98 -2.39 -0.02 1.62 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.08 2.40 8.04 -2.39 -0.02 2.38 16 43 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.01 0.35 7.38 -2.39 -0.02 0.33 16 45 H 0.00 0.24 7.51 -2.39 -0.02 0.22 16 46 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 47 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.03 1.04 7.93 -2.39 -0.02 1.02 16 Total: -1.00 -91.25 398.97 2.48 -88.77 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.17 Total: 4.92 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 9.73 Total: 26.94 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -9.32 Total: -133.79 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.13 Total: -36.18 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -91.25 2.48 -88.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317795023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.410 kcal (2) G-P(sol) polarization free energy of solvation -91.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds