Wall clock time and date at job start Tue Mar 31 2020 21:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99996 * 2 1 4 4 C 1.46904 * 111.00086 * 123.95732 * 2 1 3 5 5 C 1.53001 * 109.47106 * 66.04796 * 4 2 1 6 6 N 1.46499 * 109.46552 * 179.97438 * 5 4 2 7 7 C 1.34993 * 125.96709 * 125.02699 * 6 5 4 8 8 C 1.35220 * 107.87218 * 179.97438 * 7 6 5 9 9 C 1.40452 * 107.86988 * 0.02562 * 8 7 6 10 10 N 1.39933 * 125.98310 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99680 * 359.97438 * 10 9 8 12 12 O 1.21384 * 119.99843 * 359.97438 * 11 10 9 13 13 C 1.49335 * 119.99853 * 180.02562 * 11 10 9 14 14 O 1.21362 * 120.00365 * 359.97438 * 13 11 10 15 15 N 1.34778 * 120.00275 * 179.97438 * 13 11 10 16 16 C 1.46497 * 120.00682 * 179.97438 * 15 13 11 17 17 C 1.52995 * 109.47443 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46850 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.46797 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00410 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00063 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00203 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00279 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47127 * 89.99655 * 23 21 19 25 25 H 1.48500 * 109.47325 * 209.99764 * 23 21 19 26 26 H 1.48507 * 109.46980 * 329.99668 * 23 21 19 27 27 N 1.31274 * 108.03871 * 359.97438 * 9 8 7 28 28 H 1.08995 * 109.46669 * 296.04400 * 1 2 3 29 29 H 1.08995 * 109.47034 * 56.04741 * 1 2 3 30 30 H 1.09002 * 109.46701 * 176.04309 * 1 2 3 31 31 H 1.09001 * 109.47389 * 183.95306 * 3 2 1 32 32 H 1.09001 * 109.47287 * 303.95353 * 3 2 1 33 33 H 1.08999 * 109.47083 * 63.95723 * 3 2 1 34 34 H 1.08996 * 109.46747 * 306.04259 * 4 2 1 35 35 H 1.09007 * 109.46797 * 186.04700 * 4 2 1 36 36 H 1.09003 * 109.47118 * 60.00179 * 5 4 2 37 37 H 1.08998 * 109.46716 * 299.99348 * 5 4 2 38 38 H 1.07999 * 126.06533 * 359.97438 * 7 6 5 39 39 H 1.07998 * 126.06391 * 179.97438 * 8 7 6 40 40 H 0.96995 * 120.00333 * 179.97438 * 10 9 8 41 41 H 0.97005 * 119.99332 * 359.97438 * 15 13 11 42 42 H 1.08997 * 109.47046 * 300.00653 * 16 15 13 43 43 H 1.09005 * 109.46902 * 59.99713 * 16 15 13 44 44 H 1.08998 * 109.47172 * 299.99975 * 17 16 15 45 45 H 1.09000 * 109.46891 * 60.00635 * 17 16 15 46 46 H 1.08998 * 109.46977 * 299.99806 * 18 17 16 47 47 H 1.08991 * 109.47243 * 60.00186 * 18 17 16 48 48 H 0.96994 * 120.00209 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 1.6315 -2.2427 0.9702 6 7 2.1571 -3.0066 2.1044 7 6 1.4407 -3.8089 2.9201 8 6 2.2867 -4.3301 3.8372 9 6 3.5713 -3.8272 3.5735 10 7 4.7336 -4.1217 4.2949 11 6 4.6779 -4.9581 5.3504 12 8 3.6193 -5.4553 5.6754 13 6 5.9182 -5.2720 6.1206 14 8 6.9764 -4.7744 5.7959 15 7 5.8624 -6.1079 7.1764 16 6 7.0792 -6.4163 7.9317 17 6 6.7419 -7.3808 9.0704 18 6 8.0127 -7.7024 9.8596 19 6 7.6806 -8.6530 10.9808 20 1 6.6647 -8.9934 11.1172 21 6 8.6734 -9.0873 11.8332 22 7 9.9104 -8.6725 11.6675 23 14 8.2617 -10.2651 13.2235 24 1 8.4036 -11.6639 12.7457 25 1 9.1896 -10.0335 14.3596 26 1 6.8645 -10.0340 13.6706 27 7 3.4908 -3.0325 2.5318 28 1 -0.3632 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3873 2.0627 35 1 3.0798 -0.6611 1.1755 36 1 2.0659 -2.6214 0.0450 37 1 0.5473 -2.3475 0.9323 38 1 0.3800 -4.0005 2.8523 39 1 2.0215 -5.0115 4.6320 40 1 5.5794 -3.7241 4.0354 41 1 5.0165 -6.5052 7.4361 42 1 7.8111 -6.8777 7.2689 43 1 7.4928 -5.4966 8.3455 44 1 6.0102 -6.9189 9.7332 45 1 6.3281 -8.3006 8.6569 46 1 8.7447 -8.1642 9.1970 47 1 8.4261 -6.7826 10.2730 48 1 10.6088 -8.9777 12.2674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319335717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:50 Heat of formation + Delta-G solvation = 18.455553 kcal Electronic energy + Delta-G solvation = -27307.169089 eV Core-core repulsion = 23206.496921 eV Total energy + Delta-G solvation = -4100.672169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78662 -40.58262 -38.70730 -38.19119 -35.99348 -35.21402 -33.40201 -33.08789 -31.28857 -30.47695 -28.97968 -28.21122 -27.34394 -25.57572 -24.39000 -22.98521 -22.02289 -21.76233 -20.90130 -20.62913 -19.94460 -18.38892 -17.77092 -16.95288 -16.44300 -16.36975 -16.20735 -15.99042 -15.89767 -15.36551 -15.20265 -14.94490 -14.61148 -14.45940 -14.15481 -13.93859 -13.66115 -13.53433 -13.31374 -13.04119 -12.67012 -12.32443 -12.31379 -12.25743 -11.91899 -11.83653 -11.81749 -11.55773 -11.18959 -10.96008 -10.92075 -10.77892 -10.61038 -9.92193 -9.85479 -9.42655 -9.19432 -9.14860 -9.07490 -9.05403 -8.58734 -8.38557 -6.03350 -4.06468 1.01489 1.61426 1.66320 2.40014 2.56046 3.20437 3.30821 3.31160 3.37380 3.40290 3.55515 4.00790 4.30049 4.33962 4.43871 4.47439 4.54689 4.66966 4.71593 4.83791 4.97621 4.98836 5.22126 5.25025 5.28445 5.32784 5.32858 5.34841 5.46803 5.55121 5.66328 5.78216 6.05273 6.18855 6.25819 6.30626 6.43040 6.51693 6.58807 6.68324 6.71944 6.93067 7.20749 7.49546 7.56805 7.60748 7.72147 7.92426 7.95310 8.35860 9.00035 9.58078 11.07911 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.038788 B = 0.001386 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.707917 B =20191.279820 C =20643.123370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.042 3.958 5 C 0.143 3.857 6 N -0.366 5.366 7 C 0.064 3.936 8 C -0.264 4.264 9 C 0.297 3.703 10 N -0.611 5.611 11 C 0.520 3.480 12 O -0.493 6.493 13 C 0.507 3.493 14 O -0.519 6.519 15 N -0.687 5.687 16 C 0.113 3.887 17 C -0.123 4.123 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 N -0.314 5.314 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.041 0.959 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.428 0.572 41 H 0.412 0.588 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.070 17.152 -24.686 36.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.087 4.087 5 C 0.021 3.979 6 N -0.151 5.151 7 C -0.082 4.082 8 C -0.295 4.295 9 C 0.042 3.958 10 N -0.261 5.261 11 C 0.301 3.699 12 O -0.365 6.365 13 C 0.286 3.714 14 O -0.396 6.396 15 N -0.339 5.339 16 C -0.009 4.009 17 C -0.161 4.161 18 C -0.014 4.014 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 N -0.144 5.144 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.195 0.805 39 H 0.192 0.808 40 H 0.266 0.734 41 H 0.248 0.752 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.114 17.695 -25.856 37.232 hybrid contribution -0.856 -0.703 2.006 2.291 sum -20.970 16.992 -23.850 36.018 Atomic orbital electron populations 1.22522 0.87217 1.02465 1.01042 1.61908 1.08142 1.14560 1.42401 1.22391 1.01177 0.87934 1.00787 1.22382 1.02200 0.92190 0.91887 1.21655 0.98920 0.90651 0.86681 1.48144 1.04612 1.37045 1.25274 1.22629 0.98954 0.94508 0.92060 1.21887 0.90314 1.10865 1.06391 1.19092 0.87659 0.96451 0.92632 1.42235 1.09838 1.45629 1.28409 1.20456 0.90100 0.78919 0.80463 1.90700 1.30332 1.49272 1.66148 1.19577 0.88024 0.81433 0.82355 1.90800 1.30078 1.51218 1.67500 1.46046 1.14256 1.44818 1.28752 1.21898 0.84869 1.00381 0.93709 1.21936 1.02189 0.96918 0.95055 1.19035 0.90941 0.97007 0.94370 1.21199 0.94662 1.27360 1.12945 0.92559 1.25018 0.95032 0.96511 0.97809 1.69960 1.00490 1.44489 1.38342 0.86581 0.78244 0.81276 0.81818 1.20643 1.21209 1.19859 1.77364 0.96864 1.24840 1.15312 0.95283 0.90897 0.91126 0.90929 0.90929 0.95376 0.94053 0.88987 0.88738 0.88454 0.80452 0.80845 0.73379 0.75164 0.90875 0.90893 0.92360 0.92349 0.96164 0.96158 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.32 60.06 0.56 0.62 16 2 N -0.55 -2.99 5.02 -251.26 -1.26 -4.25 16 3 C 0.03 0.12 9.57 60.06 0.57 0.69 16 4 C 0.04 0.26 5.14 -3.82 -0.02 0.24 16 5 C 0.14 0.81 6.43 -4.04 -0.03 0.78 16 6 N -0.37 -3.20 3.68 -61.38 -0.23 -3.43 16 7 C 0.06 0.52 11.43 -17.24 -0.20 0.32 16 8 C -0.26 -2.92 9.60 -39.82 -0.38 -3.30 16 9 C 0.30 3.62 8.10 -154.55 -1.25 2.36 16 10 N -0.61 -7.26 5.43 -11.58 -0.06 -7.32 16 11 C 0.52 6.74 7.85 -11.64 -0.09 6.65 16 12 O -0.49 -6.81 13.60 5.47 0.07 -6.73 16 13 C 0.51 7.26 7.89 -11.64 -0.09 7.17 16 14 O -0.52 -8.55 16.48 5.49 0.09 -8.46 16 15 N -0.69 -9.72 5.55 -60.77 -0.34 -10.06 16 16 C 0.11 1.87 5.67 -4.05 -0.02 1.84 16 17 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 20 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 23 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 N -0.31 -3.63 12.43 31.41 0.39 -3.24 16 28 H 0.03 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.07 0.22 8.12 -51.93 -0.42 -0.20 16 30 H 0.07 0.18 6.47 -51.93 -0.34 -0.15 16 31 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 33 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 35 H 0.09 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.30 6.48 -51.93 -0.34 -0.03 16 38 H 0.18 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.17 2.03 5.91 -52.49 -0.31 1.72 16 40 H 0.43 4.61 8.29 -40.82 -0.34 4.27 16 41 H 0.41 5.20 7.94 -40.82 -0.32 4.88 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 405.18 15.07 6.11 6.11 Total: -1.00 -33.14 405.18 -8.67 -41.81 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.52 Total: 2.84 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.64 Total: 2.20 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.76 Total: -54.05 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.16 Total: -15.20 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.14 -8.67 -41.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319335717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.261 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds