Wall clock time and date at job start Tue Mar 31 2020 21:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99996 * 2 1 4 4 C 1.46904 * 111.00086 * 123.95732 * 2 1 3 5 5 C 1.53001 * 109.47106 * 66.04796 * 4 2 1 6 6 N 1.46499 * 109.46552 * 179.97438 * 5 4 2 7 7 C 1.34993 * 125.96709 * 125.02699 * 6 5 4 8 8 C 1.35220 * 107.87218 * 179.97438 * 7 6 5 9 9 C 1.40452 * 107.86988 * 0.02562 * 8 7 6 10 10 N 1.39933 * 125.98310 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99680 * 359.97438 * 10 9 8 12 12 O 1.21384 * 119.99843 * 359.97438 * 11 10 9 13 13 C 1.49335 * 119.99853 * 180.02562 * 11 10 9 14 14 O 1.21362 * 120.00365 * 359.97438 * 13 11 10 15 15 N 1.34778 * 120.00275 * 179.97438 * 13 11 10 16 16 C 1.46497 * 120.00682 * 179.97438 * 15 13 11 17 17 C 1.52995 * 109.47443 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46850 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.46797 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00410 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00063 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00203 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00279 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47127 * 89.99655 * 23 21 19 25 25 H 1.48500 * 109.47325 * 209.99764 * 23 21 19 26 26 H 1.48507 * 109.46980 * 329.99668 * 23 21 19 27 27 N 1.31274 * 108.03871 * 359.97438 * 9 8 7 28 28 H 1.08995 * 109.46669 * 296.04400 * 1 2 3 29 29 H 1.08995 * 109.47034 * 56.04741 * 1 2 3 30 30 H 1.09002 * 109.46701 * 176.04309 * 1 2 3 31 31 H 1.09001 * 109.47389 * 183.95306 * 3 2 1 32 32 H 1.09001 * 109.47287 * 303.95353 * 3 2 1 33 33 H 1.08999 * 109.47083 * 63.95723 * 3 2 1 34 34 H 1.08996 * 109.46747 * 306.04259 * 4 2 1 35 35 H 1.09007 * 109.46797 * 186.04700 * 4 2 1 36 36 H 1.09003 * 109.47118 * 60.00179 * 5 4 2 37 37 H 1.08998 * 109.46716 * 299.99348 * 5 4 2 38 38 H 1.07999 * 126.06533 * 359.97438 * 7 6 5 39 39 H 1.07998 * 126.06391 * 179.97438 * 8 7 6 40 40 H 0.96995 * 120.00333 * 179.97438 * 10 9 8 41 41 H 0.97005 * 119.99332 * 359.97438 * 15 13 11 42 42 H 1.08997 * 109.47046 * 300.00653 * 16 15 13 43 43 H 1.09005 * 109.46902 * 59.99713 * 16 15 13 44 44 H 1.08998 * 109.47172 * 299.99975 * 17 16 15 45 45 H 1.09000 * 109.46891 * 60.00635 * 17 16 15 46 46 H 1.08998 * 109.46977 * 299.99806 * 18 17 16 47 47 H 1.08991 * 109.47243 * 60.00186 * 18 17 16 48 48 H 0.96994 * 120.00209 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 1.6315 -2.2427 0.9702 6 7 2.1571 -3.0066 2.1044 7 6 1.4407 -3.8089 2.9201 8 6 2.2867 -4.3301 3.8372 9 6 3.5713 -3.8272 3.5735 10 7 4.7336 -4.1217 4.2949 11 6 4.6779 -4.9581 5.3504 12 8 3.6193 -5.4553 5.6754 13 6 5.9182 -5.2720 6.1206 14 8 6.9764 -4.7744 5.7959 15 7 5.8624 -6.1079 7.1764 16 6 7.0792 -6.4163 7.9317 17 6 6.7419 -7.3808 9.0704 18 6 8.0127 -7.7024 9.8596 19 6 7.6806 -8.6530 10.9808 20 1 6.6647 -8.9934 11.1172 21 6 8.6734 -9.0873 11.8332 22 7 9.9104 -8.6725 11.6675 23 14 8.2617 -10.2651 13.2235 24 1 8.4036 -11.6639 12.7457 25 1 9.1896 -10.0335 14.3596 26 1 6.8645 -10.0340 13.6706 27 7 3.4908 -3.0325 2.5318 28 1 -0.3632 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3873 2.0627 35 1 3.0798 -0.6611 1.1755 36 1 2.0659 -2.6214 0.0450 37 1 0.5473 -2.3475 0.9323 38 1 0.3800 -4.0005 2.8523 39 1 2.0215 -5.0115 4.6320 40 1 5.5794 -3.7241 4.0354 41 1 5.0165 -6.5052 7.4361 42 1 7.8111 -6.8777 7.2689 43 1 7.4928 -5.4966 8.3455 44 1 6.0102 -6.9189 9.7332 45 1 6.3281 -8.3006 8.6569 46 1 8.7447 -8.1642 9.1970 47 1 8.4261 -6.7826 10.2730 48 1 10.6088 -8.9777 12.2674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319335717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:48 Heat of formation + Delta-G solvation = -5.923365 kcal Electronic energy + Delta-G solvation = -27308.226238 eV Core-core repulsion = 23206.496921 eV Total energy + Delta-G solvation = -4101.729318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.61074 -41.61292 -39.79880 -38.65187 -37.28205 -36.31328 -35.19034 -33.77644 -33.05593 -31.22849 -29.68003 -28.93464 -28.51988 -26.75494 -25.26671 -24.40602 -22.75716 -22.47162 -22.35990 -21.53039 -21.02491 -19.48412 -18.60990 -18.37862 -17.85890 -17.39571 -17.09824 -16.68445 -16.60423 -16.42749 -16.31835 -16.19113 -15.74879 -15.32977 -15.20256 -14.91563 -14.60221 -14.27618 -14.23749 -13.99519 -13.76735 -13.53635 -13.42737 -13.14110 -12.87816 -12.75011 -12.64619 -12.63542 -12.52639 -12.39126 -12.18121 -11.95993 -11.68410 -11.67921 -11.52679 -11.21857 -10.79460 -10.53028 -10.33587 -9.97845 -9.48552 -9.36162 -8.17894 -6.28634 -0.02490 0.74413 0.89617 1.43503 1.44171 1.55000 1.58095 1.65264 2.16825 2.41533 2.47972 2.97672 3.16392 3.22748 3.52393 3.89197 3.91338 4.08948 4.10589 4.20657 4.21459 4.30090 4.44983 4.47591 4.54671 4.60792 4.63764 4.75296 4.78187 4.83071 4.85072 4.91860 4.93954 4.97565 5.03951 5.17560 5.21830 5.53748 5.56044 5.70818 5.73257 5.86578 5.86770 5.95409 6.08203 6.12933 6.25372 6.51656 6.68511 6.78495 6.88663 7.40902 8.93985 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.038788 B = 0.001386 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.707917 B =20191.279820 C =20643.123370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.554 5.554 3 C 0.024 3.976 4 C 0.050 3.950 5 C 0.140 3.860 6 N -0.361 5.361 7 C 0.087 3.913 8 C -0.294 4.294 9 C 0.275 3.725 10 N -0.605 5.605 11 C 0.528 3.472 12 O -0.501 6.501 13 C 0.512 3.488 14 O -0.542 6.542 15 N -0.679 5.679 16 C 0.126 3.874 17 C -0.106 4.106 18 C 0.024 3.976 19 C -0.542 4.542 20 H 0.065 0.935 21 C 0.000 4.000 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.262 1.262 27 N -0.338 5.338 28 H 0.028 0.972 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.026 0.974 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.224 0.776 39 H 0.165 0.835 40 H 0.431 0.569 41 H 0.422 0.578 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.069 0.931 46 H -0.004 1.004 47 H -0.003 1.003 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.090 16.976 -25.516 38.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.278 5.278 3 C -0.124 4.124 4 C -0.079 4.079 5 C 0.020 3.980 6 N -0.145 5.145 7 C -0.059 4.059 8 C -0.324 4.324 9 C 0.021 3.979 10 N -0.254 5.254 11 C 0.308 3.692 12 O -0.373 6.373 13 C 0.292 3.708 14 O -0.420 6.420 15 N -0.331 5.331 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.014 4.014 19 C -0.580 4.580 20 H 0.083 0.917 21 C -0.198 4.198 22 N -0.574 5.574 23 Si 0.788 3.212 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.186 1.186 27 N -0.169 5.169 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.241 0.759 39 H 0.182 0.818 40 H 0.269 0.731 41 H 0.260 0.740 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.162 17.535 -26.714 39.467 hybrid contribution 0.032 -0.557 2.144 2.215 sum -23.130 16.978 -24.571 37.775 Atomic orbital electron populations 1.22611 0.85871 1.03623 1.01324 1.61943 1.09402 1.14722 1.41782 1.22421 1.00943 0.87889 1.01188 1.22223 1.00846 0.92866 0.91985 1.21924 1.00803 0.89683 0.85588 1.48438 1.03747 1.36775 1.25554 1.23239 1.00436 0.92233 0.90025 1.21943 0.90515 1.12221 1.07718 1.19308 0.87950 0.97416 0.93266 1.42125 1.10298 1.45054 1.27971 1.20001 0.89230 0.79258 0.80663 1.90704 1.30249 1.49831 1.66525 1.19751 0.88217 0.80767 0.82058 1.90792 1.31107 1.52026 1.68097 1.45813 1.13890 1.44884 1.28554 1.21534 0.85573 0.99464 0.93073 1.21646 0.99385 0.98087 0.95288 1.18941 0.93033 0.95288 0.94131 1.21693 0.95104 1.27599 1.13604 0.91698 1.25957 0.94855 0.98352 1.00630 1.70097 1.01619 1.46044 1.39622 0.85467 0.78439 0.78927 0.78329 1.19898 1.21047 1.18583 1.77306 0.98979 1.25170 1.15461 0.95369 0.90197 0.89607 0.91547 0.89776 0.95585 0.94782 0.91210 0.88646 0.84931 0.75910 0.81780 0.73073 0.73998 0.91469 0.91488 0.91297 0.91269 0.98514 0.98500 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.32 127.69 1.19 1.26 16 2 N -0.55 -5.23 5.02 -948.85 -4.76 -10.00 16 3 C 0.02 0.20 9.57 127.69 1.22 1.43 16 4 C 0.05 0.56 5.14 86.30 0.44 1.01 16 5 C 0.14 1.25 6.43 86.38 0.56 1.81 16 6 N -0.36 -5.61 3.68 -348.10 -1.28 -6.89 16 7 C 0.09 1.18 11.43 83.51 0.95 2.13 16 8 C -0.29 -6.15 9.60 22.11 0.21 -5.94 16 9 C 0.28 6.61 8.10 133.40 1.08 7.70 16 10 N -0.60 -14.48 5.43 -308.90 -1.68 -16.16 16 11 C 0.53 13.60 7.85 87.23 0.69 14.29 16 12 O -0.50 -13.57 13.60 -3.35 -0.05 -13.61 16 13 C 0.51 14.57 7.89 87.23 0.69 15.26 16 14 O -0.54 -17.99 16.48 -3.28 -0.05 -18.04 16 15 N -0.68 -18.78 5.55 -464.53 -2.58 -21.36 16 16 C 0.13 4.16 5.67 86.38 0.49 4.65 16 17 C -0.11 -3.96 5.27 30.59 0.16 -3.79 16 18 C 0.02 1.20 4.97 29.85 0.15 1.35 16 19 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 20 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 21 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 22 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 23 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 27 N -0.34 -7.69 12.43 -54.54 -0.68 -8.36 16 28 H 0.03 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.08 0.30 8.12 -2.39 -0.02 0.28 16 30 H 0.09 0.15 6.47 -2.39 -0.02 0.13 16 31 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 32 H 0.08 0.52 8.12 -2.39 -0.02 0.50 16 33 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16 35 H 0.07 1.10 8.06 -2.38 -0.02 1.08 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.13 0.27 6.48 -2.39 -0.02 0.25 16 38 H 0.22 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.16 3.73 5.91 -2.91 -0.02 3.71 16 40 H 0.43 9.52 8.29 -92.71 -0.77 8.75 16 41 H 0.42 10.13 7.94 -92.70 -0.74 9.39 16 42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.26 14.95 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -72.37 405.18 -0.76 -73.13 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.52 Total: 19.78 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 8.53 Total: 11.94 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -10.69 Total: -118.78 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.10 Total: -31.65 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -72.37 -0.76 -73.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319335717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.203 kcal (2) G-P(sol) polarization free energy of solvation -72.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds