Wall clock time and date at job start Tue Mar 31 2020 21:20:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46896 * 110.99996 * 2 1
4 4 C 1.46904 * 111.00086 * 123.95732 * 2 1 3
5 5 C 1.53001 * 109.47106 * 66.04796 * 4 2 1
6 6 N 1.46499 * 109.46552 * 179.97438 * 5 4 2
7 7 C 1.34993 * 125.96709 * 125.02699 * 6 5 4
8 8 C 1.35220 * 107.87218 * 179.97438 * 7 6 5
9 9 C 1.40452 * 107.86988 * 0.02562 * 8 7 6
10 10 N 1.39933 * 125.98310 * 179.97438 * 9 8 7
11 11 C 1.34780 * 119.99680 * 359.97438 * 10 9 8
12 12 O 1.21384 * 119.99843 * 359.97438 * 11 10 9
13 13 C 1.49335 * 119.99853 * 180.02562 * 11 10 9
14 14 O 1.21362 * 120.00365 * 359.97438 * 13 11 10
15 15 N 1.34778 * 120.00275 * 179.97438 * 13 11 10
16 16 C 1.46497 * 120.00682 * 179.97438 * 15 13 11
17 17 C 1.52995 * 109.47443 * 179.97438 * 16 15 13
18 18 C 1.53002 * 109.46850 * 180.02562 * 17 16 15
19 19 C 1.50702 * 109.46797 * 180.02562 * 18 17 16
20 20 H 1.08004 * 120.00410 * 359.97438 * 19 18 17
21 21 C 1.37876 * 120.00063 * 180.02562 * 19 18 17
22 22 N 1.31519 * 120.00203 * 359.97438 * 21 19 18
23 23 Si 1.86802 * 120.00279 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.47127 * 89.99655 * 23 21 19
25 25 H 1.48500 * 109.47325 * 209.99764 * 23 21 19
26 26 H 1.48507 * 109.46980 * 329.99668 * 23 21 19
27 27 N 1.31274 * 108.03871 * 359.97438 * 9 8 7
28 28 H 1.08995 * 109.46669 * 296.04400 * 1 2 3
29 29 H 1.08995 * 109.47034 * 56.04741 * 1 2 3
30 30 H 1.09002 * 109.46701 * 176.04309 * 1 2 3
31 31 H 1.09001 * 109.47389 * 183.95306 * 3 2 1
32 32 H 1.09001 * 109.47287 * 303.95353 * 3 2 1
33 33 H 1.08999 * 109.47083 * 63.95723 * 3 2 1
34 34 H 1.08996 * 109.46747 * 306.04259 * 4 2 1
35 35 H 1.09007 * 109.46797 * 186.04700 * 4 2 1
36 36 H 1.09003 * 109.47118 * 60.00179 * 5 4 2
37 37 H 1.08998 * 109.46716 * 299.99348 * 5 4 2
38 38 H 1.07999 * 126.06533 * 359.97438 * 7 6 5
39 39 H 1.07998 * 126.06391 * 179.97438 * 8 7 6
40 40 H 0.96995 * 120.00333 * 179.97438 * 10 9 8
41 41 H 0.97005 * 119.99332 * 359.97438 * 15 13 11
42 42 H 1.08997 * 109.47046 * 300.00653 * 16 15 13
43 43 H 1.09005 * 109.46902 * 59.99713 * 16 15 13
44 44 H 1.08998 * 109.47172 * 299.99975 * 17 16 15
45 45 H 1.09000 * 109.46891 * 60.00635 * 17 16 15
46 46 H 1.08998 * 109.46977 * 299.99806 * 18 17 16
47 47 H 1.08991 * 109.47243 * 60.00186 * 18 17 16
48 48 H 0.96994 * 120.00209 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9955 -0.7661 1.1376
5 6 1.6315 -2.2427 0.9702
6 7 2.1571 -3.0066 2.1044
7 6 1.4407 -3.8089 2.9201
8 6 2.2867 -4.3301 3.8372
9 6 3.5713 -3.8272 3.5735
10 7 4.7336 -4.1217 4.2949
11 6 4.6779 -4.9581 5.3504
12 8 3.6193 -5.4553 5.6754
13 6 5.9182 -5.2720 6.1206
14 8 6.9764 -4.7744 5.7959
15 7 5.8624 -6.1079 7.1764
16 6 7.0792 -6.4163 7.9317
17 6 6.7419 -7.3808 9.0704
18 6 8.0127 -7.7024 9.8596
19 6 7.6806 -8.6530 10.9808
20 1 6.6647 -8.9934 11.1172
21 6 8.6734 -9.0873 11.8332
22 7 9.9104 -8.6725 11.6675
23 14 8.2617 -10.2651 13.2235
24 1 8.4036 -11.6639 12.7457
25 1 9.1896 -10.0335 14.3596
26 1 6.8645 -10.0340 13.6706
27 7 3.4908 -3.0325 2.5318
28 1 -0.3632 0.4512 0.9233
29 1 -0.3633 0.5739 -0.8524
30 1 -0.3633 -1.0253 -0.0709
31 1 3.0828 1.3432 -0.0708
32 1 1.5898 1.9163 -0.8524
33 1 1.7044 1.8723 0.9233
34 1 1.5612 -0.3873 2.0627
35 1 3.0798 -0.6611 1.1755
36 1 2.0659 -2.6214 0.0450
37 1 0.5473 -2.3475 0.9323
38 1 0.3800 -4.0005 2.8523
39 1 2.0215 -5.0115 4.6320
40 1 5.5794 -3.7241 4.0354
41 1 5.0165 -6.5052 7.4361
42 1 7.8111 -6.8777 7.2689
43 1 7.4928 -5.4966 8.3455
44 1 6.0102 -6.9189 9.7332
45 1 6.3281 -8.3006 8.6569
46 1 8.7447 -8.1642 9.1970
47 1 8.4261 -6.7826 10.2730
48 1 10.6088 -8.9777 12.2674
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001319335717.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:20:48
Heat of formation + Delta-G solvation = -5.923365 kcal
Electronic energy + Delta-G solvation = -27308.226238 eV
Core-core repulsion = 23206.496921 eV
Total energy + Delta-G solvation = -4101.729318 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.190 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.61074 -41.61292 -39.79880 -38.65187 -37.28205 -36.31328 -35.19034 -33.77644
-33.05593 -31.22849 -29.68003 -28.93464 -28.51988 -26.75494 -25.26671 -24.40602
-22.75716 -22.47162 -22.35990 -21.53039 -21.02491 -19.48412 -18.60990 -18.37862
-17.85890 -17.39571 -17.09824 -16.68445 -16.60423 -16.42749 -16.31835 -16.19113
-15.74879 -15.32977 -15.20256 -14.91563 -14.60221 -14.27618 -14.23749 -13.99519
-13.76735 -13.53635 -13.42737 -13.14110 -12.87816 -12.75011 -12.64619 -12.63542
-12.52639 -12.39126 -12.18121 -11.95993 -11.68410 -11.67921 -11.52679 -11.21857
-10.79460 -10.53028 -10.33587 -9.97845 -9.48552 -9.36162 -8.17894 -6.28634
-0.02490 0.74413 0.89617 1.43503 1.44171 1.55000 1.58095 1.65264
2.16825 2.41533 2.47972 2.97672 3.16392 3.22748 3.52393 3.89197
3.91338 4.08948 4.10589 4.20657 4.21459 4.30090 4.44983 4.47591
4.54671 4.60792 4.63764 4.75296 4.78187 4.83071 4.85072 4.91860
4.93954 4.97565 5.03951 5.17560 5.21830 5.53748 5.56044 5.70818
5.73257 5.86578 5.86770 5.95409 6.08203 6.12933 6.25372 6.51656
6.68511 6.78495 6.88663 7.40902 8.93985
Molecular weight = 337.19amu
Principal moments of inertia in cm(-1)
A = 0.038788 B = 0.001386 C = 0.001356
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 721.707917 B =20191.279820 C =20643.123370
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 N -0.554 5.554
3 C 0.024 3.976
4 C 0.050 3.950
5 C 0.140 3.860
6 N -0.361 5.361
7 C 0.087 3.913
8 C -0.294 4.294
9 C 0.275 3.725
10 N -0.605 5.605
11 C 0.528 3.472
12 O -0.501 6.501
13 C 0.512 3.488
14 O -0.542 6.542
15 N -0.679 5.679
16 C 0.126 3.874
17 C -0.106 4.106
18 C 0.024 3.976
19 C -0.542 4.542
20 H 0.065 0.935
21 C 0.000 4.000
22 N -0.934 5.934
23 Si 0.964 3.036
24 H -0.273 1.273
25 H -0.285 1.285
26 H -0.262 1.262
27 N -0.338 5.338
28 H 0.028 0.972
29 H 0.079 0.921
30 H 0.085 0.915
31 H 0.066 0.934
32 H 0.084 0.916
33 H 0.026 0.974
34 H 0.034 0.966
35 H 0.069 0.931
36 H 0.095 0.905
37 H 0.133 0.867
38 H 0.224 0.776
39 H 0.165 0.835
40 H 0.431 0.569
41 H 0.422 0.578
42 H 0.067 0.933
43 H 0.067 0.933
44 H 0.068 0.932
45 H 0.069 0.931
46 H -0.004 1.004
47 H -0.003 1.003
48 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.090 16.976 -25.516 38.982
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 N -0.278 5.278
3 C -0.124 4.124
4 C -0.079 4.079
5 C 0.020 3.980
6 N -0.145 5.145
7 C -0.059 4.059
8 C -0.324 4.324
9 C 0.021 3.979
10 N -0.254 5.254
11 C 0.308 3.692
12 O -0.373 6.373
13 C 0.292 3.708
14 O -0.420 6.420
15 N -0.331 5.331
16 C 0.004 3.996
17 C -0.144 4.144
18 C -0.014 4.014
19 C -0.580 4.580
20 H 0.083 0.917
21 C -0.198 4.198
22 N -0.574 5.574
23 Si 0.788 3.212
24 H -0.199 1.199
25 H -0.210 1.210
26 H -0.186 1.186
27 N -0.169 5.169
28 H 0.046 0.954
29 H 0.098 0.902
30 H 0.104 0.896
31 H 0.085 0.915
32 H 0.102 0.898
33 H 0.044 0.956
34 H 0.052 0.948
35 H 0.088 0.912
36 H 0.114 0.886
37 H 0.151 0.849
38 H 0.241 0.759
39 H 0.182 0.818
40 H 0.269 0.731
41 H 0.260 0.740
42 H 0.085 0.915
43 H 0.085 0.915
44 H 0.087 0.913
45 H 0.087 0.913
46 H 0.015 0.985
47 H 0.015 0.985
48 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -23.162 17.535 -26.714 39.467
hybrid contribution 0.032 -0.557 2.144 2.215
sum -23.130 16.978 -24.571 37.775
Atomic orbital electron populations
1.22611 0.85871 1.03623 1.01324 1.61943 1.09402 1.14722 1.41782
1.22421 1.00943 0.87889 1.01188 1.22223 1.00846 0.92866 0.91985
1.21924 1.00803 0.89683 0.85588 1.48438 1.03747 1.36775 1.25554
1.23239 1.00436 0.92233 0.90025 1.21943 0.90515 1.12221 1.07718
1.19308 0.87950 0.97416 0.93266 1.42125 1.10298 1.45054 1.27971
1.20001 0.89230 0.79258 0.80663 1.90704 1.30249 1.49831 1.66525
1.19751 0.88217 0.80767 0.82058 1.90792 1.31107 1.52026 1.68097
1.45813 1.13890 1.44884 1.28554 1.21534 0.85573 0.99464 0.93073
1.21646 0.99385 0.98087 0.95288 1.18941 0.93033 0.95288 0.94131
1.21693 0.95104 1.27599 1.13604 0.91698 1.25957 0.94855 0.98352
1.00630 1.70097 1.01619 1.46044 1.39622 0.85467 0.78439 0.78927
0.78329 1.19898 1.21047 1.18583 1.77306 0.98979 1.25170 1.15461
0.95369 0.90197 0.89607 0.91547 0.89776 0.95585 0.94782 0.91210
0.88646 0.84931 0.75910 0.81780 0.73073 0.73998 0.91469 0.91488
0.91297 0.91269 0.98514 0.98500 0.92841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.07 9.32 127.69 1.19 1.26 16
2 N -0.55 -5.23 5.02 -948.85 -4.76 -10.00 16
3 C 0.02 0.20 9.57 127.69 1.22 1.43 16
4 C 0.05 0.56 5.14 86.30 0.44 1.01 16
5 C 0.14 1.25 6.43 86.38 0.56 1.81 16
6 N -0.36 -5.61 3.68 -348.10 -1.28 -6.89 16
7 C 0.09 1.18 11.43 83.51 0.95 2.13 16
8 C -0.29 -6.15 9.60 22.11 0.21 -5.94 16
9 C 0.28 6.61 8.10 133.40 1.08 7.70 16
10 N -0.60 -14.48 5.43 -308.90 -1.68 -16.16 16
11 C 0.53 13.60 7.85 87.23 0.69 14.29 16
12 O -0.50 -13.57 13.60 -3.35 -0.05 -13.61 16
13 C 0.51 14.57 7.89 87.23 0.69 15.26 16
14 O -0.54 -17.99 16.48 -3.28 -0.05 -18.04 16
15 N -0.68 -18.78 5.55 -464.53 -2.58 -21.36 16
16 C 0.13 4.16 5.67 86.38 0.49 4.65 16
17 C -0.11 -3.96 5.27 30.59 0.16 -3.79 16
18 C 0.02 1.20 4.97 29.85 0.15 1.35 16
19 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16
20 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16
21 C 0.00 -0.01 5.46 84.65 0.46 0.45 16
22 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16
23 Si 0.96 43.57 29.54 68.60 2.03 45.60 16
24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16
27 N -0.34 -7.69 12.43 -54.54 -0.68 -8.36 16
28 H 0.03 0.15 8.14 -2.39 -0.02 0.13 16
29 H 0.08 0.30 8.12 -2.39 -0.02 0.28 16
30 H 0.09 0.15 6.47 -2.39 -0.02 0.13 16
31 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16
32 H 0.08 0.52 8.12 -2.39 -0.02 0.50 16
33 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16
34 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16
35 H 0.07 1.10 8.06 -2.38 -0.02 1.08 16
36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16
37 H 0.13 0.27 6.48 -2.39 -0.02 0.25 16
38 H 0.22 0.74 8.06 -2.91 -0.02 0.72 16
39 H 0.16 3.73 5.91 -2.91 -0.02 3.71 16
40 H 0.43 9.52 8.29 -92.71 -0.77 8.75 16
41 H 0.42 10.13 7.94 -92.70 -0.74 9.39 16
42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16
43 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16
44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16
45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16
46 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16
47 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16
48 H 0.26 14.95 8.31 -92.71 -0.77 14.17 16
Total: -1.00 -72.37 405.18 -0.76 -73.13
By element:
Atomic # 1 Polarization: 20.30 SS G_CDS: -0.52 Total: 19.78 kcal
Atomic # 6 Polarization: 3.41 SS G_CDS: 8.53 Total: 11.94 kcal
Atomic # 7 Polarization: -108.09 SS G_CDS: -10.69 Total: -118.78 kcal
Atomic # 8 Polarization: -31.55 SS G_CDS: -0.10 Total: -31.65 kcal
Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal
Total: -72.37 -0.76 -73.13 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001319335717.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.203 kcal
(2) G-P(sol) polarization free energy of solvation -72.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.166 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.758 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.126 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds