Wall clock time and date at job start Tue Mar 31 2020 20:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34942 * 126.03474 * 2 1 4 4 C 1.35318 * 107.74439 * 179.75272 * 3 2 1 5 5 C 1.50698 * 126.04175 * 180.27758 * 4 3 2 6 6 H 1.08994 * 109.47216 * 340.16044 * 5 4 3 7 7 C 1.52998 * 109.47273 * 100.16571 * 5 4 3 8 8 O 1.42900 * 109.47397 * 55.00072 * 7 5 4 9 9 N 1.46504 * 109.47114 * 220.16635 * 5 4 3 10 10 C 1.34772 * 120.00222 * 155.00051 * 9 5 4 11 11 O 1.21580 * 120.00002 * 359.97438 * 10 9 5 12 12 N 1.34783 * 120.00060 * 180.02562 * 10 9 5 13 13 C 1.46498 * 119.99712 * 179.97438 * 12 10 9 14 14 C 1.53040 * 109.46016 * 275.01984 * 13 12 10 15 15 C 1.53192 * 109.31330 * 178.60290 * 14 13 12 16 16 N 1.46922 * 108.76552 * 54.65812 * 15 14 13 17 17 C 1.36938 * 120.63341 * 126.36210 * 16 15 14 18 18 H 1.08002 * 119.99485 * 331.86148 * 17 16 15 19 19 C 1.38807 * 120.00374 * 151.86498 * 17 16 15 20 20 N 1.31623 * 119.99682 * 343.06323 * 19 17 16 21 21 Si 1.86795 * 120.00151 * 163.06891 * 19 17 16 22 22 H 1.48500 * 109.47248 * 89.99894 * 21 19 17 23 23 H 1.48503 * 109.47109 * 209.99773 * 21 19 17 24 24 H 1.48505 * 109.47234 * 329.99854 * 21 19 17 25 25 C 1.46927 * 118.73950 * 306.38516 * 16 15 14 26 26 C 1.53047 * 109.45616 * 154.97239 * 13 12 10 27 27 C 1.39875 * 107.91776 * 0.39342 * 4 3 2 28 28 N 1.30834 * 108.20305 * 359.60185 * 27 4 3 29 29 H 1.09007 * 109.46893 * 269.97195 * 1 2 3 30 30 H 1.08991 * 109.47309 * 29.97361 * 1 2 3 31 31 H 1.09004 * 109.47098 * 149.97514 * 1 2 3 32 32 H 1.07999 * 126.13112 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47172 * 174.99758 * 7 5 4 34 34 H 1.08992 * 109.47067 * 294.99900 * 7 5 4 35 35 H 0.96698 * 114.00140 * 179.97438 * 8 7 5 36 36 H 0.97009 * 119.99984 * 334.99786 * 9 5 4 37 37 H 0.96998 * 119.99595 * 359.97438 * 12 10 9 38 38 H 1.08994 * 109.46190 * 34.99963 * 13 12 10 39 39 H 1.08994 * 109.49890 * 298.57382 * 14 13 12 40 40 H 1.09006 * 109.49598 * 58.66854 * 14 13 12 41 41 H 1.09000 * 109.59795 * 294.87288 * 15 14 13 42 42 H 1.08997 * 109.70246 * 174.50935 * 15 14 13 43 43 H 0.96999 * 119.99866 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.59028 * 293.82117 * 25 16 15 45 45 H 1.08995 * 109.70635 * 173.46007 * 25 16 15 46 46 H 1.09003 * 109.49602 * 301.33079 * 26 13 12 47 47 H 1.08991 * 109.49672 * 61.43310 * 26 13 12 48 48 H 1.08006 * 125.89841 * 179.86147 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0056 5 6 4.7679 1.5453 0.0135 6 1 4.5012 2.5431 -0.3345 7 6 5.3236 1.6329 1.4363 8 8 5.5644 0.3158 1.9357 9 7 5.7846 0.9743 -0.8735 10 6 6.7206 1.7709 -1.4265 11 8 6.7210 2.9634 -1.1896 12 7 7.6556 1.2457 -2.2430 13 6 8.6726 2.1117 -2.8445 14 6 8.1161 2.7383 -4.1251 15 6 9.1695 3.6701 -4.7324 16 7 10.4153 2.9148 -4.9225 17 6 11.0299 2.8792 -6.1457 18 1 10.4450 2.9867 -7.0472 19 6 12.4046 2.7048 -6.2270 20 7 13.1572 2.9050 -5.1659 21 14 13.1865 2.1863 -7.8423 22 1 13.5430 3.3938 -8.6298 23 1 14.4126 1.3950 -7.5672 24 1 12.2255 1.3579 -8.6140 25 6 10.9890 2.1980 -3.7754 26 6 9.9150 1.2829 -3.1787 27 6 3.5346 -0.7321 -0.0001 28 7 2.2891 -1.1328 0.0000 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9281 2.1193 0.0004 33 1 6.2578 2.1945 1.4276 34 1 4.6018 2.1383 2.0778 35 1 5.9187 0.2949 2.8352 36 1 5.7841 0.0229 -1.0628 37 1 7.6550 0.2944 -2.4322 38 1 8.9404 2.9001 -2.1411 39 1 7.8714 1.9514 -4.8385 40 1 7.2178 3.3092 -3.8901 41 1 9.3492 4.5075 -4.0582 42 1 8.8185 4.0441 -5.6942 43 1 14.1179 2.7835 -5.2227 44 1 11.3170 2.9153 -3.0232 45 1 11.8382 1.5987 -4.1038 46 1 10.2973 0.8178 -2.2700 47 1 9.6532 0.5099 -3.9011 48 1 4.4054 -1.3711 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319516353.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:56 Heat of formation + Delta-G solvation = 27.165225 kcal Electronic energy + Delta-G solvation = -29359.106600 eV Core-core repulsion = 25258.812111 eV Total energy + Delta-G solvation = -4100.294489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.55928 -39.89398 -37.76605 -36.91210 -34.82990 -34.24478 -33.26145 -32.14439 -31.01591 -30.00150 -29.31685 -28.29106 -26.74397 -24.94614 -23.20003 -22.21348 -21.93085 -21.48164 -20.44833 -20.08638 -19.32937 -18.22692 -17.48692 -17.26275 -16.60969 -16.05374 -15.69867 -15.33221 -14.93515 -14.69350 -14.62772 -14.33786 -14.00642 -13.66900 -13.60084 -13.48208 -13.45260 -13.03723 -12.93398 -12.76176 -12.66563 -12.39082 -12.25247 -11.82475 -11.39551 -11.07599 -10.83230 -10.78953 -10.67462 -10.45278 -10.21889 -10.19017 -9.98859 -9.92579 -9.69769 -9.68132 -9.48651 -9.10896 -8.69299 -8.52431 -8.37934 -6.63845 -5.76184 -3.17877 1.58015 2.20869 2.47900 2.98247 3.39526 3.45938 3.46442 3.48902 4.12748 4.19814 4.43382 4.52599 4.53336 4.71336 4.74584 4.95754 4.99820 5.08952 5.25336 5.32653 5.38868 5.46487 5.48063 5.56752 5.64498 5.68888 5.82086 5.97357 6.15108 6.35474 6.36072 6.43687 6.54695 6.57690 6.64286 6.67947 6.68823 6.86373 7.00272 7.05470 7.22300 7.37285 7.42346 7.47088 7.66798 7.82650 8.25895 8.48432 8.85419 9.24518 9.88004 10.45279 11.32789 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.002090 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.802609 B =13396.081908 C =13772.667545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.378 5.378 3 C 0.064 3.936 4 C -0.237 4.237 5 C 0.250 3.750 6 H 0.103 0.897 7 C 0.069 3.931 8 O -0.565 6.565 9 N -0.737 5.737 10 C 0.704 3.296 11 O -0.596 6.596 12 N -0.739 5.739 13 C 0.170 3.830 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.175 3.825 26 C -0.146 4.146 27 C 0.079 3.921 28 N -0.301 5.301 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.374 0.626 36 H 0.395 0.605 37 H 0.391 0.609 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.211 -6.435 14.765 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.083 4.083 4 C -0.249 4.249 5 C 0.142 3.858 6 H 0.121 0.879 7 C -0.010 4.010 8 O -0.370 6.370 9 N -0.392 5.392 10 C 0.404 3.596 11 O -0.475 6.475 12 N -0.392 5.392 13 C 0.066 3.934 14 C -0.179 4.179 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.048 3.952 26 C -0.186 4.186 27 C -0.108 4.108 28 N -0.122 5.122 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.192 0.808 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.221 0.779 36 H 0.229 0.771 37 H 0.224 0.776 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -24.205 -6.489 14.372 28.888 hybrid contribution 1.121 -0.258 -0.328 1.196 sum -23.084 -6.747 14.044 27.850 Atomic orbital electron populations 1.21847 0.74211 1.04535 1.03309 1.48441 1.06617 1.03836 1.57101 1.22261 0.90624 0.93527 1.01875 1.19924 0.93606 0.94304 1.17071 1.18873 0.83300 0.96097 0.87482 0.87911 1.22642 0.99488 0.84357 0.94551 1.86466 1.87634 1.27896 1.34964 1.45068 1.31443 1.10986 1.51703 1.16004 0.79586 0.85227 0.78809 1.90899 1.76090 1.13733 1.66733 1.45531 1.31697 1.11619 1.50346 1.20882 0.86121 0.92330 0.94062 1.22388 0.99046 0.99954 0.96560 1.20876 0.86854 0.92297 0.97900 1.44091 1.24499 1.54894 1.08087 1.19174 0.89438 1.45015 0.84358 0.91726 1.25051 0.96298 1.01327 0.97096 1.70028 1.04293 1.51753 1.28722 0.86310 0.78698 0.78394 0.83443 1.21431 1.21596 1.20539 1.20735 0.93230 0.92915 0.88306 1.22544 0.96474 0.99675 0.99949 1.23618 0.94881 0.94322 0.97973 1.77394 1.01724 1.08088 1.25031 0.90811 0.89459 0.89298 0.80821 0.92677 0.93344 0.77936 0.77114 0.77623 0.90129 0.92518 0.92723 0.96196 0.92675 0.93645 0.96120 0.89090 0.92778 0.92260 0.80172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.47 59.85 0.69 1.14 16 2 N -0.38 -3.27 4.01 -68.16 -0.27 -3.54 16 3 C 0.06 0.52 11.40 -17.23 -0.20 0.32 16 4 C -0.24 -2.26 4.84 -105.05 -0.51 -2.77 16 5 C 0.25 2.57 2.80 -69.08 -0.19 2.38 16 6 H 0.10 1.14 7.57 -51.93 -0.39 0.75 16 7 C 0.07 0.65 6.84 37.16 0.25 0.91 16 8 O -0.57 -5.03 12.53 -35.23 -0.44 -5.47 16 9 N -0.74 -8.39 5.01 -59.82 -0.30 -8.69 16 10 C 0.70 10.60 8.50 -86.92 -0.74 9.87 16 11 O -0.60 -11.18 15.67 5.30 0.08 -11.10 16 12 N -0.74 -10.75 5.08 -58.64 -0.30 -11.05 16 13 C 0.17 3.03 2.42 -67.89 -0.16 2.87 16 14 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 15 C 0.15 3.24 6.52 -3.71 -0.02 3.21 16 16 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 17 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 20 N -0.90 -26.22 11.19 55.49 0.62 -25.60 16 21 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 26 C -0.15 -2.72 5.55 -26.61 -0.15 -2.87 16 27 C 0.08 0.80 10.50 -17.36 -0.18 0.62 16 28 N -0.30 -3.36 12.58 30.63 0.39 -2.97 16 29 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.37 1.98 9.12 45.56 0.42 2.40 16 36 H 0.40 3.81 7.65 -40.82 -0.31 3.50 16 37 H 0.39 4.67 8.62 -40.82 -0.35 4.32 16 38 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.18 1.60 7.72 -52.48 -0.41 1.19 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -35.53 392.30 -8.26 -43.79 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.79 Total: 7.63 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -1.61 Total: 9.92 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.38 Total: -67.35 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.36 Total: -16.57 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.53 -8.26 -43.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319516353.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.952 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds