Wall clock time and date at job start Tue Mar 31 2020 20:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34942 * 126.03474 * 2 1 4 4 C 1.35318 * 107.74439 * 179.75272 * 3 2 1 5 5 C 1.50698 * 126.04175 * 180.27758 * 4 3 2 6 6 H 1.08994 * 109.47216 * 340.16044 * 5 4 3 7 7 C 1.52998 * 109.47273 * 100.16571 * 5 4 3 8 8 O 1.42900 * 109.47397 * 55.00072 * 7 5 4 9 9 N 1.46504 * 109.47114 * 220.16635 * 5 4 3 10 10 C 1.34772 * 120.00222 * 155.00051 * 9 5 4 11 11 O 1.21580 * 120.00002 * 359.97438 * 10 9 5 12 12 N 1.34783 * 120.00060 * 180.02562 * 10 9 5 13 13 C 1.46498 * 119.99712 * 179.97438 * 12 10 9 14 14 C 1.53040 * 109.46016 * 275.01984 * 13 12 10 15 15 C 1.53192 * 109.31330 * 178.60290 * 14 13 12 16 16 N 1.46922 * 108.76552 * 54.65812 * 15 14 13 17 17 C 1.36938 * 120.63341 * 126.36210 * 16 15 14 18 18 H 1.08002 * 119.99485 * 331.86148 * 17 16 15 19 19 C 1.38807 * 120.00374 * 151.86498 * 17 16 15 20 20 N 1.31623 * 119.99682 * 343.06323 * 19 17 16 21 21 Si 1.86795 * 120.00151 * 163.06891 * 19 17 16 22 22 H 1.48500 * 109.47248 * 89.99894 * 21 19 17 23 23 H 1.48503 * 109.47109 * 209.99773 * 21 19 17 24 24 H 1.48505 * 109.47234 * 329.99854 * 21 19 17 25 25 C 1.46927 * 118.73950 * 306.38516 * 16 15 14 26 26 C 1.53047 * 109.45616 * 154.97239 * 13 12 10 27 27 C 1.39875 * 107.91776 * 0.39342 * 4 3 2 28 28 N 1.30834 * 108.20305 * 359.60185 * 27 4 3 29 29 H 1.09007 * 109.46893 * 269.97195 * 1 2 3 30 30 H 1.08991 * 109.47309 * 29.97361 * 1 2 3 31 31 H 1.09004 * 109.47098 * 149.97514 * 1 2 3 32 32 H 1.07999 * 126.13112 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47172 * 174.99758 * 7 5 4 34 34 H 1.08992 * 109.47067 * 294.99900 * 7 5 4 35 35 H 0.96698 * 114.00140 * 179.97438 * 8 7 5 36 36 H 0.97009 * 119.99984 * 334.99786 * 9 5 4 37 37 H 0.96998 * 119.99595 * 359.97438 * 12 10 9 38 38 H 1.08994 * 109.46190 * 34.99963 * 13 12 10 39 39 H 1.08994 * 109.49890 * 298.57382 * 14 13 12 40 40 H 1.09006 * 109.49598 * 58.66854 * 14 13 12 41 41 H 1.09000 * 109.59795 * 294.87288 * 15 14 13 42 42 H 1.08997 * 109.70246 * 174.50935 * 15 14 13 43 43 H 0.96999 * 119.99866 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.59028 * 293.82117 * 25 16 15 45 45 H 1.08995 * 109.70635 * 173.46007 * 25 16 15 46 46 H 1.09003 * 109.49602 * 301.33079 * 26 13 12 47 47 H 1.08991 * 109.49672 * 61.43310 * 26 13 12 48 48 H 1.08006 * 125.89841 * 179.86147 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0056 5 6 4.7679 1.5453 0.0135 6 1 4.5012 2.5431 -0.3345 7 6 5.3236 1.6329 1.4363 8 8 5.5644 0.3158 1.9357 9 7 5.7846 0.9743 -0.8735 10 6 6.7206 1.7709 -1.4265 11 8 6.7210 2.9634 -1.1896 12 7 7.6556 1.2457 -2.2430 13 6 8.6726 2.1117 -2.8445 14 6 8.1161 2.7383 -4.1251 15 6 9.1695 3.6701 -4.7324 16 7 10.4153 2.9148 -4.9225 17 6 11.0299 2.8792 -6.1457 18 1 10.4450 2.9867 -7.0472 19 6 12.4046 2.7048 -6.2270 20 7 13.1572 2.9050 -5.1659 21 14 13.1865 2.1863 -7.8423 22 1 13.5430 3.3938 -8.6298 23 1 14.4126 1.3950 -7.5672 24 1 12.2255 1.3579 -8.6140 25 6 10.9890 2.1980 -3.7754 26 6 9.9150 1.2829 -3.1787 27 6 3.5346 -0.7321 -0.0001 28 7 2.2891 -1.1328 0.0000 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9281 2.1193 0.0004 33 1 6.2578 2.1945 1.4276 34 1 4.6018 2.1383 2.0778 35 1 5.9187 0.2949 2.8352 36 1 5.7841 0.0229 -1.0628 37 1 7.6550 0.2944 -2.4322 38 1 8.9404 2.9001 -2.1411 39 1 7.8714 1.9514 -4.8385 40 1 7.2178 3.3092 -3.8901 41 1 9.3492 4.5075 -4.0582 42 1 8.8185 4.0441 -5.6942 43 1 14.1179 2.7835 -5.2227 44 1 11.3170 2.9153 -3.0232 45 1 11.8382 1.5987 -4.1038 46 1 10.2973 0.8178 -2.2700 47 1 9.6532 0.5099 -3.9011 48 1 4.4054 -1.3711 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319516353.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:55 Heat of formation + Delta-G solvation = -0.984999 kcal Electronic energy + Delta-G solvation = -29360.327285 eV Core-core repulsion = 25258.812111 eV Total energy + Delta-G solvation = -4101.515174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.23459 -41.09096 -39.19371 -37.91975 -35.99470 -35.57168 -34.06171 -33.71104 -32.15065 -31.59024 -30.83852 -29.13790 -27.29683 -26.81620 -24.30067 -23.84555 -23.31740 -22.32988 -21.46039 -21.07270 -20.81786 -19.39799 -18.68267 -18.20498 -17.88573 -17.12004 -16.76192 -16.35591 -16.34357 -15.85871 -15.65379 -15.37652 -15.33392 -15.20886 -14.84970 -14.73041 -14.45135 -14.22593 -14.04580 -13.96378 -13.53343 -13.26337 -13.23648 -13.11932 -12.97838 -12.59240 -12.54633 -12.48848 -12.20611 -11.99812 -11.84036 -11.54392 -11.50738 -11.33915 -11.18832 -10.82076 -10.53734 -10.34272 -10.22829 -9.70078 -9.33936 -8.68280 -7.85991 -5.31305 0.95088 1.49136 1.50397 1.60357 1.61260 1.74139 1.99257 2.27169 2.53520 3.28041 3.38066 3.48627 3.63330 3.69750 3.94760 4.03089 4.10962 4.17758 4.29297 4.38948 4.40057 4.47216 4.49936 4.55933 4.62158 4.68891 4.72891 4.78840 4.85054 4.88904 4.93638 5.04609 5.10751 5.11872 5.19897 5.33516 5.50052 5.61745 5.66639 5.67738 5.68465 5.73114 6.11449 6.15496 6.41127 6.75708 6.95199 7.16439 7.19742 7.69319 7.86244 8.39318 9.21179 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.002090 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.802609 B =13396.081908 C =13772.667545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.379 5.379 3 C 0.072 3.928 4 C -0.251 4.251 5 C 0.250 3.750 6 H 0.095 0.905 7 C 0.076 3.924 8 O -0.574 6.574 9 N -0.720 5.720 10 C 0.703 3.297 11 O -0.634 6.634 12 N -0.729 5.729 13 C 0.183 3.817 14 C -0.123 4.123 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.067 0.933 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.270 1.270 25 C 0.179 3.821 26 C -0.128 4.128 27 C 0.072 3.928 28 N -0.337 5.337 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.207 0.793 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.390 0.610 36 H 0.406 0.594 37 H 0.407 0.593 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.008 0.992 42 H 0.057 0.943 43 H 0.251 0.749 44 H -0.005 1.005 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.379 -7.437 14.848 30.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.161 5.161 3 C -0.076 4.076 4 C -0.264 4.264 5 C 0.143 3.857 6 H 0.113 0.887 7 C -0.004 4.004 8 O -0.381 6.381 9 N -0.375 5.375 10 C 0.403 3.597 11 O -0.515 6.515 12 N -0.383 5.383 13 C 0.078 3.922 14 C -0.163 4.163 15 C 0.019 3.981 16 N -0.333 5.333 17 C -0.392 4.392 18 H 0.084 0.916 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.194 1.194 25 C 0.053 3.947 26 C -0.168 4.168 27 C -0.114 4.114 28 N -0.159 5.159 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.223 0.777 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.239 0.761 36 H 0.241 0.759 37 H 0.243 0.757 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.026 0.974 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.013 0.987 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -26.435 -7.554 14.482 31.074 hybrid contribution 1.694 0.105 -0.285 1.721 sum -24.740 -7.449 14.197 29.481 Atomic orbital electron populations 1.22187 0.72035 1.05876 1.04596 1.48780 1.07908 1.03315 1.56079 1.22776 0.90158 0.94757 0.99939 1.19854 0.93829 0.93900 1.18784 1.18918 0.83358 0.95829 0.87564 0.88714 1.22502 0.98834 0.84513 0.94525 1.86427 1.87806 1.27478 1.36376 1.44956 1.30495 1.11183 1.50903 1.16087 0.79941 0.84922 0.78739 1.90880 1.77072 1.15590 1.67976 1.45151 1.30954 1.12032 1.50166 1.20457 0.86557 0.92016 0.93182 1.22180 0.97885 0.99421 0.96844 1.20966 0.86569 0.92531 0.98050 1.44348 1.25276 1.55793 1.07852 1.19501 0.89871 1.44492 0.85369 0.91558 1.25822 0.96782 1.01736 1.00307 1.70186 1.04219 1.52996 1.30723 0.85263 0.77627 0.77836 0.79605 1.21342 1.21772 1.19444 1.20560 0.94116 0.92637 0.87424 1.22260 0.95172 0.98629 1.00725 1.23752 0.94964 0.94787 0.97908 1.77333 1.02373 1.09784 1.26446 0.89529 0.86766 0.89380 0.77667 0.94844 0.91494 0.76123 0.75878 0.75696 0.92499 0.91830 0.92239 0.97407 0.92481 0.94032 0.98679 0.91884 0.90618 0.91293 0.79748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.47 127.77 1.47 2.05 16 2 N -0.38 -5.74 4.01 -369.55 -1.48 -7.22 16 3 C 0.07 0.98 11.40 83.54 0.95 1.93 16 4 C -0.25 -4.34 4.84 -20.14 -0.10 -4.44 16 5 C 0.25 4.79 2.80 44.24 0.12 4.91 16 6 H 0.09 1.99 7.57 -2.39 -0.02 1.97 16 7 C 0.08 1.33 6.84 71.98 0.49 1.82 16 8 O -0.57 -9.32 12.53 -148.98 -1.87 -11.18 16 9 N -0.72 -15.33 5.01 -461.42 -2.31 -17.64 16 10 C 0.70 20.33 8.50 179.05 1.52 21.85 16 11 O -0.63 -23.50 15.67 -3.97 -0.06 -23.56 16 12 N -0.73 -19.96 5.08 -457.69 -2.33 -22.28 16 13 C 0.18 6.38 2.42 45.02 0.11 6.49 16 14 C -0.12 -4.51 5.65 30.67 0.17 -4.33 16 15 C 0.15 6.39 6.52 86.36 0.56 6.95 16 16 N -0.61 -31.15 2.99 -699.11 -2.09 -33.25 16 17 C -0.26 -14.53 9.58 84.03 0.81 -13.73 16 18 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 19 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 20 N -0.94 -55.50 11.19 21.65 0.24 -55.26 16 21 Si 0.97 44.85 29.59 68.60 2.03 46.88 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C 0.18 8.65 5.30 86.36 0.46 9.11 16 26 C -0.13 -4.65 5.55 30.68 0.17 -4.48 16 27 C 0.07 1.37 10.50 85.24 0.89 2.26 16 28 N -0.34 -7.09 12.58 -57.02 -0.72 -7.81 16 29 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.21 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.03 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.39 3.50 9.12 -74.06 -0.68 2.83 16 36 H 0.41 7.06 7.65 -92.70 -0.71 6.35 16 37 H 0.41 8.67 8.62 -92.71 -0.80 7.87 16 38 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 45 H 0.06 3.40 6.06 -2.39 -0.01 3.38 16 46 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.19 3.07 7.72 -2.91 -0.02 3.05 16 Total: -1.00 -77.64 392.30 -1.72 -79.37 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -1.19 Total: 23.99 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 8.05 Total: 27.96 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -8.69 Total: -143.46 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.93 Total: -34.74 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -77.64 -1.72 -79.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319516353.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.382 kcal (2) G-P(sol) polarization free energy of solvation -77.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds