Wall clock time and date at job start Tue Mar 31 2020 21:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99699 * 2 1 4 4 C 1.53002 * 109.47238 * 66.04406 * 3 2 1 5 5 N 1.46499 * 109.47052 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99815 * 269.99694 * 5 4 3 7 7 C 1.34777 * 120.00125 * 90.00340 * 5 4 3 8 8 O 1.21282 * 119.99930 * 359.97438 * 7 5 4 9 9 C 1.50696 * 119.99855 * 179.97438 * 7 5 4 10 10 C 1.52999 * 109.47018 * 179.97438 * 9 7 5 11 11 C 1.50704 * 109.47417 * 180.02562 * 10 9 7 12 12 C 1.34664 * 126.58651 * 275.03863 * 11 10 9 13 13 N 1.34134 * 108.01786 * 179.74146 * 12 11 10 14 14 C 1.30496 * 109.25675 * 0.37372 * 13 12 11 15 15 N 1.35047 * 108.70161 * 359.62603 * 14 13 12 16 16 H 0.96997 * 126.40535 * 180.25138 * 15 14 13 17 17 C 1.46890 * 111.00190 * 236.04492 * 2 1 3 18 18 C 1.50694 * 109.47448 * 293.94864 * 17 2 1 19 19 O 1.21294 * 120.00096 * 0.02562 * 18 17 2 20 20 N 1.34783 * 120.00527 * 179.97438 * 18 17 2 21 21 C 1.37088 * 120.00319 * 180.02562 * 20 18 17 22 22 H 1.08008 * 120.00222 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00411 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00514 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99398 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47333 * 90.00382 * 25 23 21 27 27 H 1.48502 * 109.46690 * 210.00278 * 25 23 21 28 28 H 1.48497 * 109.47315 * 329.99593 * 25 23 21 29 29 H 1.09002 * 109.47090 * 60.00058 * 1 2 3 30 30 H 1.09004 * 109.46726 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47252 * 299.99697 * 1 2 3 32 32 H 1.08997 * 109.47478 * 306.04216 * 3 2 1 33 33 H 1.09000 * 109.46950 * 186.04157 * 3 2 1 34 34 H 1.09005 * 109.46846 * 59.99835 * 4 3 2 35 35 H 1.09000 * 109.46947 * 299.99754 * 4 3 2 36 36 H 1.09000 * 109.47264 * 269.99695 * 6 5 4 37 37 H 1.08998 * 109.47208 * 30.00488 * 6 5 4 38 38 H 1.09006 * 109.47010 * 150.00190 * 6 5 4 39 39 H 1.08999 * 109.47441 * 59.99731 * 9 7 5 40 40 H 1.08998 * 109.47505 * 299.99456 * 9 7 5 41 41 H 1.08992 * 109.47476 * 59.99861 * 10 9 7 42 42 H 1.09004 * 109.47205 * 299.99755 * 10 9 7 43 43 H 1.07998 * 125.99171 * 359.92955 * 12 11 10 44 44 H 1.08002 * 125.65353 * 179.89694 * 14 13 12 45 45 H 1.08993 * 109.47357 * 53.95629 * 17 2 1 46 46 H 1.09002 * 109.46961 * 173.95210 * 17 2 1 47 47 H 0.96998 * 119.99790 * 0.02562 * 20 18 17 48 48 H 0.96999 * 120.00143 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3182 5 7 2.1557 3.4254 1.3180 6 6 3.5007 3.6944 1.8329 7 6 1.4009 4.4364 0.8441 8 8 0.2876 4.2137 0.4175 9 6 1.9402 5.8436 0.8444 10 6 0.8920 6.7915 0.2582 11 6 1.4315 8.1987 0.2578 12 6 1.3913 9.0740 1.2804 13 7 1.9809 10.2096 0.8779 14 6 2.3778 10.0739 -0.3578 15 7 2.0572 8.8325 -0.7817 16 1 2.2370 8.4593 -1.6588 17 6 1.9954 -0.7659 -1.1375 18 6 1.6371 -2.2204 -0.9727 19 8 1.0049 -2.5832 -0.0033 20 7 2.0182 -3.1180 -1.9031 21 6 1.6918 -4.4410 -1.7535 22 1 1.1288 -4.7641 -0.8902 23 6 2.0852 -5.3665 -2.7124 24 7 1.7727 -6.6348 -2.5687 25 14 3.0583 -4.8077 -4.2058 26 1 4.5106 -4.8749 -3.9038 27 1 2.7505 -5.6939 -5.3570 28 1 2.6871 -3.4102 -4.5439 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5611 1.9274 -0.8309 33 1 3.0797 1.3445 -0.1082 34 1 2.0657 1.5016 2.1492 35 1 0.5470 2.0845 1.4264 36 1 3.4448 3.9106 2.8997 37 1 4.1328 2.8212 1.6717 38 1 3.9252 4.5516 1.3102 39 1 2.8462 5.8857 0.2398 40 1 2.1711 6.1441 1.8664 41 1 -0.0142 6.7497 0.8623 42 1 0.6615 6.4910 -0.7640 43 1 0.9624 8.8924 2.2548 44 1 2.8833 10.8279 -0.9430 45 1 1.5612 -0.3873 -2.0627 46 1 3.0797 -0.6610 -1.1755 47 1 2.5235 -2.8279 -2.6786 48 1 2.0470 -7.2808 -3.2383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320006957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:26 Heat of formation + Delta-G solvation = 3.220012 kcal Electronic energy + Delta-G solvation = -28186.890518 eV Core-core repulsion = 24085.557687 eV Total energy + Delta-G solvation = -4101.332831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.47340 -40.29318 -38.77600 -36.94519 -35.56789 -34.43331 -33.89666 -32.76282 -31.68451 -30.53299 -28.99810 -27.84658 -27.03648 -25.75104 -24.67135 -23.40902 -21.98004 -21.32878 -21.02529 -19.45725 -19.27800 -18.44494 -18.23793 -17.21625 -16.70491 -16.32001 -15.97112 -15.47887 -15.26076 -15.05091 -14.88153 -14.58034 -14.28909 -14.22029 -13.86942 -13.74148 -13.53248 -13.14810 -13.11616 -13.08296 -12.88540 -12.83450 -12.44742 -12.40213 -12.14335 -11.93037 -11.67947 -11.46579 -11.32066 -11.03203 -10.85009 -10.60781 -10.47107 -10.40336 -10.13462 -9.98188 -9.54386 -9.05556 -8.81394 -8.54907 -8.18452 -7.97818 -6.31458 -3.82716 1.55763 2.29991 2.56065 2.70558 2.77305 3.01404 3.05504 3.13865 3.73507 3.95661 4.07329 4.10279 4.30037 4.44811 4.49978 4.59450 4.74437 4.77505 4.89789 4.91165 4.99689 5.01775 5.12855 5.16300 5.21795 5.27891 5.31533 5.42808 5.51648 5.56560 5.65511 5.69328 5.82323 5.84169 5.85518 5.93541 5.98158 6.19712 6.29467 6.54148 6.89869 7.03154 7.14439 7.28406 7.58240 7.61897 7.84895 8.14450 8.60092 8.95115 9.42217 9.83448 10.81694 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023787 B = 0.001692 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.811464 B =16543.541211 C =17080.992243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.043 3.957 4 C 0.117 3.883 5 N -0.616 5.616 6 C 0.075 3.925 7 C 0.511 3.489 8 O -0.536 6.536 9 C -0.133 4.133 10 C -0.029 4.029 11 C -0.021 4.021 12 C -0.023 4.023 13 N -0.495 5.495 14 C 0.182 3.818 15 N -0.567 5.567 16 H 0.420 0.580 17 C 0.044 3.956 18 C 0.454 3.546 19 O -0.558 6.558 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.016 0.984 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.170 0.830 44 H 0.207 0.793 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 31.318 2.953 32.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.240 5.240 3 C -0.087 4.087 4 C -0.006 4.006 5 N -0.349 5.349 6 C -0.068 4.068 7 C 0.299 3.701 8 O -0.412 6.412 9 C -0.173 4.173 10 C -0.069 4.069 11 C -0.137 4.137 12 C -0.171 4.171 13 N -0.213 5.213 14 C -0.102 4.102 15 N -0.171 5.171 16 H 0.257 0.743 17 C -0.087 4.087 18 C 0.239 3.761 19 O -0.440 6.440 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.035 0.965 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.187 0.813 44 H 0.224 0.776 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.209 31.211 4.281 31.931 hybrid contribution 0.815 -0.202 -3.035 3.149 sum 6.023 31.008 1.246 31.612 Atomic orbital electron populations 1.22597 0.86326 1.04437 0.99423 1.61517 1.09090 1.10910 1.42531 1.22425 1.00007 0.89160 0.97098 1.21499 1.01047 0.79939 0.98096 1.47888 1.16655 1.07853 1.62540 1.21866 0.82982 1.02620 0.99315 1.20659 0.85358 0.86884 0.77231 1.90737 1.19709 1.84722 1.46076 1.21694 0.99974 0.91608 1.04066 1.19769 0.97785 0.85963 1.03336 1.21305 1.05248 0.97357 0.89788 1.22158 1.05217 0.89959 0.99734 1.70302 1.15061 1.25747 1.10224 1.25001 1.04339 0.87368 0.93503 1.43349 1.45651 1.13604 1.14502 0.74275 1.21883 1.00632 0.94025 0.92175 1.19621 0.85090 0.86390 0.84986 1.90528 1.42517 1.79920 1.30992 1.42210 1.51112 1.08387 1.21417 1.19431 1.33785 0.80303 1.09774 0.86239 1.25029 0.97901 0.95132 0.98073 1.69619 1.45704 1.01136 1.35695 0.86679 0.80892 0.78686 0.83167 1.19623 1.20195 1.19587 0.96517 0.88516 0.91816 0.94826 0.91047 0.89292 0.89397 0.92148 0.90472 0.91115 0.89099 0.88252 0.88451 0.90313 0.81321 0.77604 0.93400 0.89390 0.79769 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.96 60.06 0.54 0.87 16 2 N -0.52 -8.33 4.50 -244.38 -1.10 -9.43 16 3 C 0.04 0.53 5.28 -3.82 -0.02 0.51 16 4 C 0.12 1.29 5.33 -4.04 -0.02 1.27 16 5 N -0.62 -5.34 2.87 -181.56 -0.52 -5.86 16 6 C 0.08 0.38 10.24 59.85 0.61 1.00 16 7 C 0.51 4.84 7.67 -10.99 -0.08 4.76 16 8 O -0.54 -7.24 15.56 5.56 0.09 -7.15 16 9 C -0.13 -0.77 4.23 -27.89 -0.12 -0.88 16 10 C -0.03 -0.19 5.06 -27.88 -0.14 -0.33 16 11 C -0.02 -0.14 6.49 -81.60 -0.53 -0.67 16 12 C -0.02 -0.19 11.79 -17.81 -0.21 -0.40 16 13 N -0.49 -4.61 11.25 -14.66 -0.16 -4.77 16 14 C 0.18 1.09 13.04 -90.37 -1.18 -0.09 16 15 N -0.57 -2.79 6.15 -10.30 -0.06 -2.85 16 16 H 0.42 0.86 8.96 -40.82 -0.37 0.50 16 17 C 0.04 0.75 5.45 -4.98 -0.03 0.73 16 18 C 0.45 10.29 7.47 -10.99 -0.08 10.21 16 19 O -0.56 -14.80 13.91 5.54 0.08 -14.73 16 20 N -0.59 -14.08 5.09 -10.96 -0.06 -14.13 16 21 C -0.30 -8.59 10.16 -14.94 -0.15 -8.74 16 22 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.70 13.96 55.50 0.77 -24.93 16 25 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 1.92 5.82 -51.93 -0.30 1.62 16 31 H 0.06 0.95 6.47 -51.93 -0.34 0.61 16 32 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.07 0.79 7.93 -51.93 -0.41 0.37 16 34 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.09 1.13 5.83 -51.93 -0.30 0.83 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 38 H 0.07 0.24 6.44 -51.93 -0.33 -0.10 16 39 H 0.09 0.40 7.40 -51.93 -0.38 0.01 16 40 H 0.10 0.45 8.11 -51.93 -0.42 0.03 16 41 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 43 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.21 0.45 8.06 -52.49 -0.42 0.03 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 47 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 48 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -37.36 395.80 -8.50 -45.86 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.28 Total: 8.17 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -1.51 Total: 9.27 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -1.13 Total: -61.97 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.16 Total: -21.88 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.36 -8.50 -45.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320006957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.084 kcal (2) G-P(sol) polarization free energy of solvation -37.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds