Wall clock time and date at job start Tue Mar 31 2020 21:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99699 * 2 1 4 4 C 1.53002 * 109.47238 * 66.04406 * 3 2 1 5 5 N 1.46499 * 109.47052 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99815 * 269.99694 * 5 4 3 7 7 C 1.34777 * 120.00125 * 90.00340 * 5 4 3 8 8 O 1.21282 * 119.99930 * 359.97438 * 7 5 4 9 9 C 1.50696 * 119.99855 * 179.97438 * 7 5 4 10 10 C 1.52999 * 109.47018 * 179.97438 * 9 7 5 11 11 C 1.50704 * 109.47417 * 180.02562 * 10 9 7 12 12 C 1.34664 * 126.58651 * 275.03863 * 11 10 9 13 13 N 1.34134 * 108.01786 * 179.74146 * 12 11 10 14 14 C 1.30496 * 109.25675 * 0.37372 * 13 12 11 15 15 N 1.35047 * 108.70161 * 359.62603 * 14 13 12 16 16 H 0.96997 * 126.40535 * 180.25138 * 15 14 13 17 17 C 1.46890 * 111.00190 * 236.04492 * 2 1 3 18 18 C 1.50694 * 109.47448 * 293.94864 * 17 2 1 19 19 O 1.21294 * 120.00096 * 0.02562 * 18 17 2 20 20 N 1.34783 * 120.00527 * 179.97438 * 18 17 2 21 21 C 1.37088 * 120.00319 * 180.02562 * 20 18 17 22 22 H 1.08008 * 120.00222 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00411 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00514 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99398 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47333 * 90.00382 * 25 23 21 27 27 H 1.48502 * 109.46690 * 210.00278 * 25 23 21 28 28 H 1.48497 * 109.47315 * 329.99593 * 25 23 21 29 29 H 1.09002 * 109.47090 * 60.00058 * 1 2 3 30 30 H 1.09004 * 109.46726 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47252 * 299.99697 * 1 2 3 32 32 H 1.08997 * 109.47478 * 306.04216 * 3 2 1 33 33 H 1.09000 * 109.46950 * 186.04157 * 3 2 1 34 34 H 1.09005 * 109.46846 * 59.99835 * 4 3 2 35 35 H 1.09000 * 109.46947 * 299.99754 * 4 3 2 36 36 H 1.09000 * 109.47264 * 269.99695 * 6 5 4 37 37 H 1.08998 * 109.47208 * 30.00488 * 6 5 4 38 38 H 1.09006 * 109.47010 * 150.00190 * 6 5 4 39 39 H 1.08999 * 109.47441 * 59.99731 * 9 7 5 40 40 H 1.08998 * 109.47505 * 299.99456 * 9 7 5 41 41 H 1.08992 * 109.47476 * 59.99861 * 10 9 7 42 42 H 1.09004 * 109.47205 * 299.99755 * 10 9 7 43 43 H 1.07998 * 125.99171 * 359.92955 * 12 11 10 44 44 H 1.08002 * 125.65353 * 179.89694 * 14 13 12 45 45 H 1.08993 * 109.47357 * 53.95629 * 17 2 1 46 46 H 1.09002 * 109.46961 * 173.95210 * 17 2 1 47 47 H 0.96998 * 119.99790 * 0.02562 * 20 18 17 48 48 H 0.96999 * 120.00143 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3182 5 7 2.1557 3.4254 1.3180 6 6 3.5007 3.6944 1.8329 7 6 1.4009 4.4364 0.8441 8 8 0.2876 4.2137 0.4175 9 6 1.9402 5.8436 0.8444 10 6 0.8920 6.7915 0.2582 11 6 1.4315 8.1987 0.2578 12 6 1.3913 9.0740 1.2804 13 7 1.9809 10.2096 0.8779 14 6 2.3778 10.0739 -0.3578 15 7 2.0572 8.8325 -0.7817 16 1 2.2370 8.4593 -1.6588 17 6 1.9954 -0.7659 -1.1375 18 6 1.6371 -2.2204 -0.9727 19 8 1.0049 -2.5832 -0.0033 20 7 2.0182 -3.1180 -1.9031 21 6 1.6918 -4.4410 -1.7535 22 1 1.1288 -4.7641 -0.8902 23 6 2.0852 -5.3665 -2.7124 24 7 1.7727 -6.6348 -2.5687 25 14 3.0583 -4.8077 -4.2058 26 1 4.5106 -4.8749 -3.9038 27 1 2.7505 -5.6939 -5.3570 28 1 2.6871 -3.4102 -4.5439 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5611 1.9274 -0.8309 33 1 3.0797 1.3445 -0.1082 34 1 2.0657 1.5016 2.1492 35 1 0.5470 2.0845 1.4264 36 1 3.4448 3.9106 2.8997 37 1 4.1328 2.8212 1.6717 38 1 3.9252 4.5516 1.3102 39 1 2.8462 5.8857 0.2398 40 1 2.1711 6.1441 1.8664 41 1 -0.0142 6.7497 0.8623 42 1 0.6615 6.4910 -0.7640 43 1 0.9624 8.8924 2.2548 44 1 2.8833 10.8279 -0.9430 45 1 1.5612 -0.3873 -2.0627 46 1 3.0797 -0.6610 -1.1755 47 1 2.5235 -2.8279 -2.6786 48 1 2.0470 -7.2808 -3.2383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320006957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:24 Heat of formation + Delta-G solvation = -25.620028 kcal Electronic energy + Delta-G solvation = -28188.141116 eV Core-core repulsion = 24085.557687 eV Total energy + Delta-G solvation = -4102.583429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.93783 -41.05464 -40.45627 -38.20835 -36.49445 -35.86452 -34.97673 -33.75644 -33.23825 -31.44667 -29.74235 -29.13260 -27.67937 -26.97663 -25.95232 -24.46110 -22.47426 -22.31005 -21.60448 -21.26672 -20.25038 -19.96920 -18.90510 -17.94799 -17.79090 -17.38288 -16.95692 -16.71820 -16.58528 -16.03531 -15.77126 -15.66830 -15.41482 -15.26006 -14.89296 -14.62247 -14.51176 -14.29455 -14.28587 -14.02572 -13.75033 -13.70628 -13.59780 -13.33475 -13.16151 -13.07821 -12.79869 -12.62065 -12.55327 -12.40824 -12.16371 -11.98135 -11.84150 -11.47348 -10.99092 -10.92092 -10.85718 -10.41918 -10.23336 -9.70780 -9.30947 -9.29420 -8.40838 -6.01605 1.10112 1.29878 1.35383 1.44204 1.60861 1.91811 1.95434 2.22933 2.23178 2.31895 2.69777 3.14344 3.25413 3.50270 3.88057 3.93911 3.99126 4.04311 4.07441 4.11910 4.25733 4.33246 4.35848 4.39857 4.47515 4.51242 4.56535 4.59488 4.61914 4.67701 4.73160 4.81899 4.82653 4.94099 5.00849 5.09014 5.16609 5.36014 5.46194 5.53376 5.80187 5.85580 5.97245 6.11058 6.39581 6.58440 6.60061 6.88874 7.15271 7.16743 7.39977 7.97374 8.76797 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023787 B = 0.001692 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.811464 B =16543.541211 C =17080.992243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.533 5.533 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.613 5.613 6 C 0.069 3.931 7 C 0.506 3.494 8 O -0.584 6.584 9 C -0.120 4.120 10 C -0.022 4.022 11 C -0.017 4.017 12 C -0.047 4.047 13 N -0.541 5.541 14 C 0.188 3.812 15 N -0.558 5.558 16 H 0.434 0.566 17 C 0.055 3.945 18 C 0.452 3.548 19 O -0.604 6.604 20 N -0.592 5.592 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.255 1.255 27 H -0.276 1.276 28 H -0.233 1.233 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.172 0.828 44 H 0.241 0.759 45 H 0.072 0.928 46 H 0.125 0.875 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.196 34.483 0.819 35.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.258 5.258 3 C -0.076 4.076 4 C -0.003 4.003 5 N -0.346 5.346 6 C -0.073 4.073 7 C 0.296 3.704 8 O -0.464 6.464 9 C -0.160 4.160 10 C -0.061 4.061 11 C -0.134 4.134 12 C -0.194 4.194 13 N -0.260 5.260 14 C -0.096 4.096 15 N -0.162 5.162 16 H 0.275 0.725 17 C -0.076 4.076 18 C 0.239 3.761 19 O -0.488 6.488 20 N -0.234 5.234 21 C -0.457 4.457 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.157 1.157 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.189 0.811 44 H 0.257 0.743 45 H 0.090 0.910 46 H 0.143 0.857 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.463 34.407 2.155 35.497 hybrid contribution -0.254 -1.180 -2.235 2.540 sum 8.209 33.227 -0.080 34.226 Atomic orbital electron populations 1.22406 0.87254 1.01970 1.00340 1.61463 1.08511 1.13254 1.42528 1.22430 1.01068 0.86681 0.97465 1.21296 0.99828 0.81477 0.97685 1.47969 1.17922 1.06599 1.62075 1.22135 0.80973 1.03923 1.00238 1.21305 0.84736 0.88209 0.76197 1.90720 1.21860 1.85535 1.48299 1.21660 1.00176 0.88714 1.05461 1.19646 0.97607 0.86058 1.02838 1.21200 1.05159 0.97116 0.89894 1.22359 1.06085 0.90374 1.00606 1.70274 1.16824 1.26727 1.12187 1.25662 1.03041 0.88010 0.92867 1.43325 1.44857 1.13239 1.14826 0.72528 1.21830 1.02947 0.89359 0.93432 1.20834 0.83003 0.88721 0.83515 1.90520 1.44049 1.81384 1.32860 1.42024 1.51877 1.06809 1.22658 1.19002 1.34827 0.83063 1.08819 0.92651 1.26105 0.98659 0.94647 1.01926 1.69804 1.47209 1.03008 1.37499 0.85367 0.79126 0.80010 0.77018 1.17912 1.20117 1.15659 0.95825 0.92453 0.90803 0.95380 0.88602 0.88764 0.91859 0.91063 0.89871 0.88723 0.86745 0.86607 0.89769 0.90807 0.81116 0.74278 0.91026 0.85673 0.77549 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 8.96 127.69 1.14 2.09 16 2 N -0.53 -16.38 4.50 -927.09 -4.17 -20.55 16 3 C 0.05 1.16 5.28 86.30 0.46 1.61 16 4 C 0.12 2.48 5.33 86.38 0.46 2.94 16 5 N -0.61 -9.15 2.87 -846.74 -2.43 -11.58 16 6 C 0.07 0.45 10.24 127.77 1.31 1.76 16 7 C 0.51 8.71 7.67 87.66 0.67 9.38 16 8 O -0.58 -15.57 15.56 -3.04 -0.05 -15.62 16 9 C -0.12 -1.07 4.23 29.85 0.13 -0.94 16 10 C -0.02 -0.25 5.06 29.85 0.15 -0.10 16 11 C -0.02 -0.20 6.49 40.95 0.27 0.07 16 12 C -0.05 -0.73 11.79 83.52 0.98 0.25 16 13 N -0.54 -9.47 11.25 -200.31 -2.25 -11.73 16 14 C 0.19 1.82 13.04 180.26 2.35 4.18 16 15 N -0.56 -4.11 6.15 -186.49 -1.15 -5.25 16 16 H 0.43 0.51 8.96 -92.71 -0.83 -0.32 16 17 C 0.06 1.73 5.45 85.56 0.47 2.20 16 18 C 0.45 20.49 7.47 87.65 0.66 21.14 16 19 O -0.60 -33.48 13.91 -3.07 -0.04 -33.52 16 20 N -0.59 -27.92 5.09 -306.98 -1.56 -29.48 16 21 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 22 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.93 -56.37 13.96 21.66 0.30 -56.07 16 25 Si 0.96 38.55 27.74 68.60 1.90 40.45 16 26 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 27 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 29 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 2.38 5.82 -2.38 -0.01 2.36 16 31 H 0.07 2.26 6.47 -2.39 -0.02 2.25 16 32 H 0.03 0.67 8.12 -2.39 -0.02 0.66 16 33 H 0.10 1.69 7.93 -2.39 -0.02 1.67 16 34 H 0.09 1.82 8.07 -2.38 -0.02 1.80 16 35 H 0.06 1.62 5.83 -2.39 -0.01 1.61 16 36 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.08 0.49 8.07 -2.39 -0.02 0.47 16 38 H 0.09 0.19 6.44 -2.38 -0.02 0.17 16 39 H 0.11 0.52 7.40 -2.39 -0.02 0.50 16 40 H 0.12 0.70 8.11 -2.39 -0.02 0.68 16 41 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 42 H 0.07 0.92 8.10 -2.38 -0.02 0.90 16 43 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 44 H 0.24 0.29 8.06 -2.91 -0.02 0.27 16 45 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 46 H 0.13 3.04 7.93 -2.39 -0.02 3.02 16 47 H 0.39 15.13 5.76 -92.71 -0.53 14.59 16 48 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -88.88 395.80 0.48 -88.40 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.43 Total: 29.12 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 10.36 Total: 25.84 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -11.27 Total: -134.66 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.09 Total: -49.14 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.90 Total: 40.45 kcal Total: -88.88 0.48 -88.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320006957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.780 kcal (2) G-P(sol) polarization free energy of solvation -88.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds