Wall clock time and date at job start Tue Mar 31 2020 21:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99829 * 2 1 4 4 C 1.53000 * 109.47016 * 66.04949 * 3 2 1 5 5 N 1.46500 * 109.46839 * 180.02562 * 4 3 2 6 6 C 1.46506 * 120.00108 * 269.99635 * 5 4 3 7 7 C 1.34778 * 120.00162 * 89.99412 * 5 4 3 8 8 O 1.21275 * 120.00290 * 0.02562 * 7 5 4 9 9 C 1.50700 * 119.99863 * 179.97438 * 7 5 4 10 10 C 1.53001 * 109.47063 * 180.02562 * 9 7 5 11 11 N 1.46500 * 109.47362 * 180.02562 * 10 9 7 12 12 C 1.36890 * 126.39499 * 269.96938 * 11 10 9 13 13 C 1.34669 * 106.81617 * 180.02562 * 12 11 10 14 14 N 1.34134 * 108.02026 * 0.02562 * 13 12 11 15 15 C 1.30493 * 109.25480 * 0.02562 * 14 13 12 16 16 C 1.46896 * 111.00121 * 236.04555 * 2 1 3 17 17 C 1.50698 * 109.47356 * 293.95260 * 16 2 1 18 18 O 1.21300 * 119.99868 * 359.97438 * 17 16 2 19 19 N 1.34780 * 120.00245 * 179.97438 * 17 16 2 20 20 C 1.37100 * 119.99677 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00400 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99748 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99705 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00191 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46897 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47389 * 120.00126 * 24 22 20 27 27 H 1.48495 * 109.46996 * 240.00403 * 24 22 20 28 28 H 1.09000 * 109.47496 * 60.00369 * 1 2 3 29 29 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47162 * 300.00033 * 1 2 3 31 31 H 1.09000 * 109.47269 * 306.04377 * 3 2 1 32 32 H 1.09004 * 109.46834 * 186.04486 * 3 2 1 33 33 H 1.08992 * 109.47369 * 60.00224 * 4 3 2 34 34 H 1.09004 * 109.46941 * 299.99471 * 4 3 2 35 35 H 1.09001 * 109.47159 * 270.00375 * 6 5 4 36 36 H 1.09004 * 109.46767 * 29.99551 * 6 5 4 37 37 H 1.08996 * 109.47409 * 150.00022 * 6 5 4 38 38 H 1.09004 * 109.47609 * 60.00130 * 9 7 5 39 39 H 1.09005 * 109.47570 * 300.00077 * 9 7 5 40 40 H 1.09000 * 109.47395 * 59.99876 * 10 9 7 41 41 H 1.08994 * 109.47038 * 300.00030 * 10 9 7 42 42 H 1.07996 * 126.59258 * 0.08195 * 12 11 10 43 43 H 1.08002 * 125.99042 * 180.26007 * 13 12 11 44 44 H 1.08006 * 125.64594 * 180.02562 * 15 14 13 45 45 H 1.09001 * 109.47242 * 53.95423 * 16 2 1 46 46 H 1.09001 * 109.47387 * 173.95137 * 16 2 1 47 47 H 0.96995 * 119.99833 * 0.02562 * 19 17 16 48 48 H 0.97002 * 119.99547 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 7 2.1559 3.4253 1.3180 6 6 3.5009 3.6943 1.8328 7 6 1.4011 4.4363 0.8441 8 8 0.2875 4.2138 0.4183 9 6 1.9404 5.8435 0.8444 10 6 0.8918 6.7917 0.2592 11 7 1.4163 8.1596 0.2589 12 6 1.2894 9.0784 1.2657 13 6 1.9142 10.1976 0.8527 14 7 2.4087 9.9686 -0.3730 15 6 2.1135 8.7503 -0.7354 16 6 1.9954 -0.7660 -1.1375 17 6 1.6370 -2.2204 -0.9728 18 8 1.0055 -2.5833 -0.0029 19 7 2.0181 -3.1180 -1.9032 20 6 1.6924 -4.4412 -1.7530 21 1 1.1301 -4.7643 -0.8894 22 6 2.0848 -5.3665 -2.7125 23 7 2.7686 -4.9733 -3.7636 24 14 1.6405 -7.1693 -2.5083 25 1 0.8734 -7.3505 -1.2498 26 1 0.8123 -7.6086 -3.6600 27 1 2.8822 -7.9819 -2.4530 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 -0.8309 32 1 3.0797 1.3444 -0.1082 33 1 2.0658 1.5016 2.1491 34 1 0.5471 2.0844 1.4265 35 1 3.4451 3.9104 2.8997 36 1 4.1329 2.8209 1.6717 37 1 3.9253 4.5514 1.3102 38 1 2.8465 5.8856 0.2398 39 1 2.1714 6.1440 1.8664 40 1 -0.0139 6.7496 0.8641 41 1 0.6605 6.4914 -0.7627 42 1 0.7859 8.9333 2.2100 43 1 2.0049 11.1170 1.4121 44 1 2.3835 8.2901 -1.6744 45 1 1.5611 -0.3872 -2.0628 46 1 3.0797 -0.6611 -1.1756 47 1 2.5234 -2.8278 -2.6787 48 1 3.0429 -5.6193 -4.4332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320029419.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:39 Heat of formation + Delta-G solvation = 9.396489 kcal Electronic energy + Delta-G solvation = -28185.122381 eV Core-core repulsion = 24084.057382 eV Total energy + Delta-G solvation = -4101.064999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.41409 -40.40748 -38.63782 -36.92920 -35.61829 -35.23830 -33.86285 -31.49198 -31.24036 -29.93631 -29.55266 -27.72899 -27.12118 -25.81475 -24.79455 -23.58680 -21.70721 -21.41849 -21.07905 -19.55749 -19.14283 -18.23567 -17.85448 -16.88778 -16.80570 -16.48292 -16.00017 -15.57056 -15.23149 -14.94797 -14.63329 -14.61554 -14.32180 -14.18515 -13.99178 -13.82420 -13.52971 -13.41481 -13.29358 -13.23307 -13.02490 -12.87833 -12.55869 -12.16450 -12.11112 -11.90117 -11.52663 -11.34013 -11.26157 -10.95942 -10.84992 -10.41464 -10.35217 -10.31201 -10.23705 -9.99772 -9.49913 -9.12918 -8.90909 -8.45702 -7.99681 -7.88841 -6.43037 -3.83773 1.64463 2.14807 2.20365 2.67529 2.82642 3.15270 3.25973 3.33134 3.88943 3.96792 4.04310 4.11071 4.14898 4.27360 4.36184 4.53311 4.60588 4.74923 4.81310 4.86143 4.92611 5.07815 5.08735 5.14767 5.16688 5.24324 5.26429 5.32721 5.42454 5.63641 5.67077 5.74686 5.82237 5.86710 5.92893 6.01852 6.12931 6.26841 6.35157 6.56396 6.76611 6.92180 7.22194 7.33753 7.54311 7.69849 7.70859 8.05425 8.60575 9.17055 9.53221 10.04986 10.74795 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030463 B = 0.001595 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.922196 B =17550.498481 C =17834.845800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.516 5.516 3 C 0.042 3.958 4 C 0.117 3.883 5 N -0.612 5.612 6 C 0.074 3.926 7 C 0.516 3.484 8 O -0.536 6.536 9 C -0.155 4.155 10 C 0.120 3.880 11 N -0.459 5.459 12 C -0.057 4.057 13 C -0.031 4.031 14 N -0.497 5.497 15 C 0.182 3.818 16 C 0.047 3.953 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.016 0.984 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.173 0.827 43 H 0.169 0.831 44 H 0.204 0.796 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 25.651 9.076 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.241 5.241 3 C -0.087 4.087 4 C -0.005 4.005 5 N -0.345 5.345 6 C -0.069 4.069 7 C 0.303 3.697 8 O -0.412 6.412 9 C -0.196 4.196 10 C -0.003 4.003 11 N -0.142 5.142 12 C -0.190 4.190 13 C -0.179 4.179 14 N -0.215 5.215 15 C -0.100 4.100 16 C -0.084 4.084 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.034 0.966 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.191 0.809 43 H 0.186 0.814 44 H 0.221 0.779 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.487 25.356 9.317 27.054 hybrid contribution -0.319 -0.969 -0.723 1.251 sum 1.168 24.387 8.594 25.883 Atomic orbital electron populations 1.22580 0.86515 1.04385 0.99209 1.61524 1.08945 1.10696 1.42887 1.22419 1.00134 0.89379 0.96816 1.21536 1.01002 0.79622 0.98381 1.47858 1.16632 1.07903 1.62143 1.21898 0.82900 1.02870 0.99260 1.20309 0.85368 0.86450 0.77543 1.90759 1.19593 1.84685 1.46204 1.22026 1.00590 0.92454 1.04527 1.21619 0.96543 0.77246 1.04924 1.45649 1.41704 1.12050 1.14814 1.22790 1.09071 0.91120 0.95979 1.22333 1.02569 0.99008 0.93979 1.70317 1.23251 1.14503 1.13406 1.25073 0.98594 0.90598 0.95784 1.21854 1.00537 0.94186 0.91841 1.19714 0.85465 0.86588 0.85257 1.90486 1.43889 1.80123 1.31623 1.41873 1.49450 1.07383 1.21420 1.19755 1.32891 0.82248 1.07892 0.87829 1.25263 0.96832 1.00588 0.95289 1.69624 1.38162 1.35663 1.10893 0.85798 0.78200 0.81907 0.78432 1.19210 1.20790 1.20757 0.96578 0.88535 0.92059 0.94795 0.90974 0.89202 0.89372 0.92132 0.90191 0.91041 0.87950 0.88069 0.88007 0.87767 0.80935 0.81406 0.77929 0.93467 0.89494 0.77516 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 8.96 60.06 0.54 0.89 16 2 N -0.52 -8.50 4.50 -244.37 -1.10 -9.60 16 3 C 0.04 0.53 5.28 -3.82 -0.02 0.51 16 4 C 0.12 1.26 5.33 -4.04 -0.02 1.24 16 5 N -0.61 -5.05 2.87 -181.57 -0.52 -5.57 16 6 C 0.07 0.35 10.24 59.85 0.61 0.97 16 7 C 0.52 4.52 7.67 -10.98 -0.08 4.44 16 8 O -0.54 -6.76 15.56 5.56 0.09 -6.68 16 9 C -0.16 -0.79 4.58 -27.88 -0.13 -0.92 16 10 C 0.12 0.67 5.44 -4.04 -0.02 0.65 16 11 N -0.46 -3.05 2.75 -118.58 -0.33 -3.37 16 12 C -0.06 -0.38 11.58 -16.56 -0.19 -0.57 16 13 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 14 N -0.50 -5.07 11.25 -14.66 -0.16 -5.24 16 15 C 0.18 1.41 12.56 -90.38 -1.14 0.27 16 16 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 17 C 0.44 10.40 7.47 -10.99 -0.08 10.32 16 18 O -0.58 -15.37 13.91 5.54 0.08 -15.29 16 19 N -0.56 -14.22 5.29 -10.96 -0.06 -14.27 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 24 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 30 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 31 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.07 0.82 7.93 -51.93 -0.41 0.41 16 33 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.09 1.10 5.83 -51.93 -0.30 0.80 16 35 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.07 0.22 6.44 -51.93 -0.33 -0.11 16 38 H 0.10 0.41 7.40 -51.93 -0.38 0.02 16 39 H 0.10 0.40 8.11 -51.93 -0.42 -0.02 16 40 H 0.10 0.60 8.10 -51.93 -0.42 0.18 16 41 H 0.10 0.60 8.10 -51.93 -0.42 0.18 16 42 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.20 0.97 8.06 -52.48 -0.42 0.55 16 45 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 400.02 15.07 6.03 6.03 Total: -1.00 -35.32 400.02 -8.67 -43.98 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.37 Total: 7.57 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -1.01 Total: 10.23 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -1.45 Total: -61.74 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.16 Total: -21.97 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.32 -8.67 -43.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320029419.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.381 kcal (2) G-P(sol) polarization free energy of solvation -35.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds