Wall clock time and date at job start Tue Mar 31 2020 21:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99829 * 2 1 4 4 C 1.53000 * 109.47016 * 66.04949 * 3 2 1 5 5 N 1.46500 * 109.46839 * 180.02562 * 4 3 2 6 6 C 1.46506 * 120.00108 * 269.99635 * 5 4 3 7 7 C 1.34778 * 120.00162 * 89.99412 * 5 4 3 8 8 O 1.21275 * 120.00290 * 0.02562 * 7 5 4 9 9 C 1.50700 * 119.99863 * 179.97438 * 7 5 4 10 10 C 1.53001 * 109.47063 * 180.02562 * 9 7 5 11 11 N 1.46500 * 109.47362 * 180.02562 * 10 9 7 12 12 C 1.36890 * 126.39499 * 269.96938 * 11 10 9 13 13 C 1.34669 * 106.81617 * 180.02562 * 12 11 10 14 14 N 1.34134 * 108.02026 * 0.02562 * 13 12 11 15 15 C 1.30493 * 109.25480 * 0.02562 * 14 13 12 16 16 C 1.46896 * 111.00121 * 236.04555 * 2 1 3 17 17 C 1.50698 * 109.47356 * 293.95260 * 16 2 1 18 18 O 1.21300 * 119.99868 * 359.97438 * 17 16 2 19 19 N 1.34780 * 120.00245 * 179.97438 * 17 16 2 20 20 C 1.37100 * 119.99677 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00400 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99748 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99705 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00191 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46897 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47389 * 120.00126 * 24 22 20 27 27 H 1.48495 * 109.46996 * 240.00403 * 24 22 20 28 28 H 1.09000 * 109.47496 * 60.00369 * 1 2 3 29 29 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47162 * 300.00033 * 1 2 3 31 31 H 1.09000 * 109.47269 * 306.04377 * 3 2 1 32 32 H 1.09004 * 109.46834 * 186.04486 * 3 2 1 33 33 H 1.08992 * 109.47369 * 60.00224 * 4 3 2 34 34 H 1.09004 * 109.46941 * 299.99471 * 4 3 2 35 35 H 1.09001 * 109.47159 * 270.00375 * 6 5 4 36 36 H 1.09004 * 109.46767 * 29.99551 * 6 5 4 37 37 H 1.08996 * 109.47409 * 150.00022 * 6 5 4 38 38 H 1.09004 * 109.47609 * 60.00130 * 9 7 5 39 39 H 1.09005 * 109.47570 * 300.00077 * 9 7 5 40 40 H 1.09000 * 109.47395 * 59.99876 * 10 9 7 41 41 H 1.08994 * 109.47038 * 300.00030 * 10 9 7 42 42 H 1.07996 * 126.59258 * 0.08195 * 12 11 10 43 43 H 1.08002 * 125.99042 * 180.26007 * 13 12 11 44 44 H 1.08006 * 125.64594 * 180.02562 * 15 14 13 45 45 H 1.09001 * 109.47242 * 53.95423 * 16 2 1 46 46 H 1.09001 * 109.47387 * 173.95137 * 16 2 1 47 47 H 0.96995 * 119.99833 * 0.02562 * 19 17 16 48 48 H 0.97002 * 119.99547 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 7 2.1559 3.4253 1.3180 6 6 3.5009 3.6943 1.8328 7 6 1.4011 4.4363 0.8441 8 8 0.2875 4.2138 0.4183 9 6 1.9404 5.8435 0.8444 10 6 0.8918 6.7917 0.2592 11 7 1.4163 8.1596 0.2589 12 6 1.2894 9.0784 1.2657 13 6 1.9142 10.1976 0.8527 14 7 2.4087 9.9686 -0.3730 15 6 2.1135 8.7503 -0.7354 16 6 1.9954 -0.7660 -1.1375 17 6 1.6370 -2.2204 -0.9728 18 8 1.0055 -2.5833 -0.0029 19 7 2.0181 -3.1180 -1.9032 20 6 1.6924 -4.4412 -1.7530 21 1 1.1301 -4.7643 -0.8894 22 6 2.0848 -5.3665 -2.7125 23 7 2.7686 -4.9733 -3.7636 24 14 1.6405 -7.1693 -2.5083 25 1 0.8734 -7.3505 -1.2498 26 1 0.8123 -7.6086 -3.6600 27 1 2.8822 -7.9819 -2.4530 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 -0.8309 32 1 3.0797 1.3444 -0.1082 33 1 2.0658 1.5016 2.1491 34 1 0.5471 2.0844 1.4265 35 1 3.4451 3.9104 2.8997 36 1 4.1329 2.8209 1.6717 37 1 3.9253 4.5514 1.3102 38 1 2.8465 5.8856 0.2398 39 1 2.1714 6.1440 1.8664 40 1 -0.0139 6.7496 0.8641 41 1 0.6605 6.4914 -0.7627 42 1 0.7859 8.9333 2.2100 43 1 2.0049 11.1170 1.4121 44 1 2.3835 8.2901 -1.6744 45 1 1.5611 -0.3872 -2.0628 46 1 3.0797 -0.6611 -1.1756 47 1 2.5234 -2.8278 -2.6787 48 1 3.0429 -5.6193 -4.4332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320029419.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:38 Heat of formation + Delta-G solvation = -14.900743 kcal Electronic energy + Delta-G solvation = -28186.175988 eV Core-core repulsion = 24084.057382 eV Total energy + Delta-G solvation = -4102.118606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.93850 -41.11810 -40.34073 -38.19119 -36.54967 -35.83762 -35.76530 -33.28665 -32.15549 -30.71160 -30.19266 -29.15406 -27.71679 -27.04182 -26.12023 -24.61792 -22.43519 -22.24300 -21.70410 -21.01307 -20.15950 -19.84539 -18.76978 -17.91264 -17.49153 -17.47512 -16.97807 -16.59276 -16.55857 -16.25424 -15.84105 -15.62335 -15.49856 -15.14844 -15.04978 -14.77976 -14.52009 -14.31984 -14.05327 -13.93537 -13.79374 -13.76212 -13.51655 -13.45084 -13.21586 -13.03814 -12.89616 -12.61752 -12.55192 -12.39671 -12.34910 -12.11269 -11.85940 -11.46658 -11.07645 -10.91510 -10.58274 -10.33971 -10.00070 -9.75532 -9.43371 -9.29426 -8.46547 -5.95026 1.13784 1.36647 1.42089 1.50767 1.56168 1.65449 2.04940 2.07532 2.25111 2.29858 2.84116 3.20224 3.39918 3.49657 3.69683 3.71058 3.91431 3.92357 4.06979 4.13982 4.20733 4.27041 4.34337 4.37868 4.42755 4.46762 4.49978 4.57948 4.60901 4.64113 4.70846 4.77566 4.80056 4.82823 4.91731 4.97469 5.16585 5.35867 5.39952 5.42047 5.82808 5.84807 6.02426 6.13460 6.27024 6.31781 6.60766 7.06073 7.13373 7.16598 7.56476 8.12286 8.71088 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030463 B = 0.001595 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.922196 B =17550.498481 C =17834.845800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.529 5.529 3 C 0.050 3.950 4 C 0.123 3.877 5 N -0.611 5.611 6 C 0.068 3.932 7 C 0.513 3.487 8 O -0.581 6.581 9 C -0.140 4.140 10 C 0.123 3.877 11 N -0.456 5.456 12 C -0.051 4.051 13 C -0.057 4.057 14 N -0.539 5.539 15 C 0.175 3.825 16 C 0.059 3.941 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.020 0.980 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.199 0.801 43 H 0.179 0.821 44 H 0.226 0.774 45 H 0.062 0.938 46 H 0.114 0.886 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 26.494 9.482 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.254 5.254 3 C -0.079 4.079 4 C 0.000 4.000 5 N -0.343 5.343 6 C -0.074 4.074 7 C 0.302 3.698 8 O -0.461 6.461 9 C -0.181 4.181 10 C 0.001 3.999 11 N -0.138 5.138 12 C -0.184 4.184 13 C -0.204 4.204 14 N -0.258 5.258 15 C -0.107 4.107 16 C -0.072 4.072 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.196 1.196 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.216 0.784 43 H 0.196 0.804 44 H 0.242 0.758 45 H 0.080 0.920 46 H 0.132 0.868 47 H 0.229 0.771 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.804 26.231 9.727 28.117 hybrid contribution -0.722 -1.171 -0.807 1.595 sum 2.082 25.060 8.921 26.682 Atomic orbital electron populations 1.22409 0.87132 1.02111 1.00228 1.61488 1.08588 1.13008 1.42325 1.22443 1.00922 0.86936 0.97574 1.21302 0.99986 0.81204 0.97535 1.47931 1.17878 1.06651 1.61817 1.22152 0.80942 1.03951 1.00319 1.20907 0.84740 0.87713 0.76462 1.90745 1.21640 1.85480 1.48219 1.21946 1.00599 0.89572 1.05940 1.21590 0.96652 0.76815 1.04862 1.45697 1.41285 1.12265 1.14578 1.23200 1.08088 0.90467 0.96629 1.22673 1.03477 1.00283 0.93949 1.70280 1.24837 1.15990 1.14660 1.25516 0.98343 0.90242 0.96649 1.21738 1.02216 0.90273 0.93020 1.20718 0.83770 0.88652 0.83945 1.90466 1.45089 1.81396 1.32964 1.41935 1.50076 1.07065 1.22108 1.19703 1.34373 0.84002 1.08051 0.90260 1.26026 0.96270 1.04300 0.94655 1.69681 1.38221 1.37096 1.11201 0.84871 0.78252 0.76986 0.78230 1.19789 1.19754 1.19561 0.96160 0.92250 0.90520 0.95506 0.89043 0.88559 0.91458 0.90764 0.89933 0.88817 0.86143 0.86199 0.88254 0.88064 0.78373 0.80366 0.75812 0.92040 0.86804 0.77055 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 8.96 127.69 1.14 2.13 16 2 N -0.53 -16.95 4.50 -927.06 -4.17 -21.12 16 3 C 0.05 1.17 5.28 86.30 0.46 1.62 16 4 C 0.12 2.47 5.33 86.38 0.46 2.93 16 5 N -0.61 -8.58 2.87 -846.75 -2.43 -11.01 16 6 C 0.07 0.41 10.24 127.77 1.31 1.72 16 7 C 0.51 7.95 7.67 87.66 0.67 8.62 16 8 O -0.58 -14.23 15.56 -3.01 -0.05 -14.27 16 9 C -0.14 -1.01 4.58 29.85 0.14 -0.87 16 10 C 0.12 1.14 5.44 86.38 0.47 1.61 16 11 N -0.46 -5.15 2.75 -529.07 -1.46 -6.60 16 12 C -0.05 -0.58 11.58 83.08 0.96 0.38 16 13 C -0.06 -0.89 11.87 83.52 0.99 0.10 16 14 N -0.54 -10.63 11.25 -200.31 -2.25 -12.89 16 15 C 0.17 2.46 12.56 180.27 2.26 4.72 16 16 C 0.06 2.03 5.45 85.56 0.47 2.50 16 17 C 0.44 20.96 7.47 87.66 0.66 21.61 16 18 O -0.61 -33.62 13.91 -3.09 -0.04 -33.66 16 19 N -0.57 -29.39 5.29 -306.97 -1.62 -31.01 16 20 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.49 13.05 21.66 0.28 -49.20 16 24 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 2.46 5.82 -2.39 -0.01 2.44 16 30 H 0.08 2.30 6.47 -2.39 -0.02 2.28 16 31 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.09 1.79 7.93 -2.38 -0.02 1.77 16 33 H 0.10 1.80 8.07 -2.39 -0.02 1.78 16 34 H 0.07 1.65 5.83 -2.38 -0.01 1.63 16 35 H 0.07 0.29 8.14 -2.39 -0.02 0.28 16 36 H 0.08 0.51 8.07 -2.38 -0.02 0.49 16 37 H 0.09 0.18 6.44 -2.39 -0.02 0.17 16 38 H 0.12 0.49 7.40 -2.39 -0.02 0.48 16 39 H 0.12 0.48 8.11 -2.38 -0.02 0.46 16 40 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 41 H 0.10 1.03 8.10 -2.39 -0.02 1.01 16 42 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.23 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 46 H 0.11 3.34 7.93 -2.39 -0.02 3.32 16 47 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 48 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -78.50 400.02 1.79 -76.71 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.24 Total: 29.34 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 11.27 Total: 28.89 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -11.65 Total: -131.84 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.09 Total: -47.93 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -78.50 1.79 -76.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320029419.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.807 kcal (2) G-P(sol) polarization free energy of solvation -78.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds