Wall clock time and date at job start Tue Mar 31 2020 21:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35492 * 126.98168 * 2 1 4 4 N 1.30526 * 107.30762 * 179.77439 * 3 2 1 5 5 N 1.28594 * 109.66842 * 0.22713 * 4 3 2 6 6 C 1.30514 * 109.67896 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.34899 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47036 * 89.98302 * 7 6 5 9 9 C 1.42900 * 113.99980 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47264 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00060 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.01251 * 326.38940 * 13 12 10 15 15 C 1.54272 * 110.03319 * 87.83132 * 13 12 10 16 16 C 1.54889 * 104.19406 * 95.67437 * 15 13 12 17 17 C 1.54884 * 102.74930 * 37.94372 * 16 15 13 18 18 C 1.53870 * 110.03159 * 204.99877 * 13 12 10 19 19 H 1.08997 * 110.03349 * 359.97438 * 18 13 12 20 20 C 1.53003 * 110.03143 * 121.38291 * 18 13 12 21 21 N 1.46501 * 109.46578 * 184.99961 * 20 18 13 22 22 C 1.36943 * 119.99538 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00103 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99957 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00104 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00065 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47215 * 60.00030 * 26 24 22 28 28 H 1.48500 * 109.47343 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47074 * 299.99855 * 26 24 22 30 30 H 1.08997 * 109.47529 * 90.02432 * 1 2 3 31 31 H 1.08999 * 109.47709 * 210.02442 * 1 2 3 32 32 H 1.09005 * 109.47242 * 330.02465 * 1 2 3 33 33 H 1.08002 * 126.34907 * 0.04187 * 3 2 1 34 34 H 1.09001 * 109.46856 * 209.98123 * 7 6 5 35 35 H 1.08996 * 109.47063 * 329.97867 * 7 6 5 36 36 H 1.08997 * 109.47332 * 299.99593 * 9 8 7 37 37 H 1.09005 * 109.47142 * 60.00180 * 9 8 7 38 38 H 0.96998 * 120.00268 * 0.02562 * 12 10 9 39 39 H 1.08995 * 110.48576 * 214.35426 * 15 13 12 40 40 H 1.08998 * 110.47979 * 336.99723 * 15 13 12 41 41 H 1.08995 * 110.75685 * 279.63013 * 16 15 13 42 42 H 1.09002 * 110.91185 * 156.33409 * 16 15 13 43 43 H 1.09003 * 110.48659 * 203.37911 * 17 16 15 44 44 H 1.08998 * 110.49257 * 80.73275 * 17 16 15 45 45 H 1.08997 * 109.47014 * 304.99465 * 20 18 13 46 46 H 1.08993 * 109.47261 * 65.00254 * 20 18 13 47 47 H 0.97001 * 120.00799 * 359.97438 * 21 20 18 48 48 H 0.97006 * 119.99969 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.0823 0.0000 4 7 3.5090 0.6429 0.0049 5 7 3.5089 -0.6430 0.0032 6 6 2.2800 -1.0824 -0.0024 7 6 1.8476 -2.5261 -0.0067 8 8 1.7061 -2.9849 1.3392 9 6 1.2975 -4.3499 1.4480 10 6 1.1813 -4.7250 2.9030 11 8 1.4240 -3.9041 3.7622 12 7 0.8077 -5.9727 3.2494 13 6 0.6942 -6.3372 4.6639 14 1 1.4434 -5.8029 5.2481 15 6 -0.7195 -6.0036 5.1838 16 6 -1.4955 -7.3381 5.0569 17 6 -0.4305 -8.3916 5.4502 18 6 0.8779 -7.8555 4.8333 19 1 1.0511 -8.3212 3.8631 20 6 2.0547 -8.1398 5.7688 21 7 2.2940 -9.5840 5.8274 22 6 3.3052 -10.0793 6.6068 23 1 3.9265 -9.4054 7.1779 24 6 3.5316 -11.4477 6.6628 25 7 2.7747 -12.2690 5.9664 26 14 4.9105 -12.1235 7.7264 27 1 4.6769 -11.7403 9.1420 28 1 4.9433 -13.6038 7.6128 29 1 6.2079 -11.5636 7.2696 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3634 0.8902 0.5135 33 1 1.9702 2.1170 0.0006 34 1 0.8926 -2.6177 -0.5241 35 1 2.5977 -3.1285 -0.5190 36 1 0.3312 -4.4799 0.9607 37 1 2.0366 -4.9899 0.9661 38 1 0.6139 -6.6294 2.5623 39 1 -0.6774 -5.6843 6.2251 40 1 -1.1812 -5.2335 4.5659 41 1 -1.8321 -7.4932 4.0319 42 1 -2.3388 -7.3649 5.7470 43 1 -0.6814 -9.3642 5.0268 44 1 -0.3417 -8.4580 6.5346 45 1 2.9468 -7.6387 5.3931 46 1 1.8230 -7.7691 6.7672 47 1 1.7362 -10.1893 5.3142 48 1 2.9332 -13.2253 6.0053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320169571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:53 Heat of formation + Delta-G solvation = 11.185510 kcal Electronic energy + Delta-G solvation = -28450.703004 eV Core-core repulsion = 24349.715583 eV Total energy + Delta-G solvation = -4100.987421 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.50136 -40.19148 -38.60519 -37.52612 -35.48302 -34.51891 -33.50431 -32.07464 -31.38065 -29.33452 -28.56365 -28.21643 -27.38414 -26.24969 -24.39689 -22.80170 -22.17764 -21.48387 -21.26971 -20.03008 -19.68051 -17.90658 -17.56113 -17.31502 -16.82588 -16.74491 -16.51069 -16.00025 -15.53435 -15.29437 -15.05489 -14.56190 -14.39290 -14.22119 -13.94855 -13.74303 -13.55948 -13.30803 -13.12468 -12.84260 -12.69385 -12.40654 -12.04943 -11.87075 -11.58788 -11.34332 -10.95547 -10.84610 -10.77602 -10.77165 -10.63860 -10.62545 -10.44222 -10.31200 -10.28992 -10.04373 -9.87973 -9.71490 -9.65598 -9.04445 -8.85527 -6.91334 -5.76055 -3.04262 1.21479 1.98567 2.36229 2.50647 2.78116 3.45787 3.49809 3.50953 3.52819 3.99401 4.09381 4.15798 4.34403 4.46196 4.49078 4.56048 4.65351 4.68618 4.74493 4.77928 4.79131 4.86371 5.04180 5.10489 5.39487 5.43679 5.55000 5.59457 5.65790 5.68088 5.78095 5.81681 5.86459 6.01743 6.12388 6.20701 6.25535 6.32769 6.40867 6.48344 6.56974 6.59546 6.78138 6.89708 7.41982 7.71478 8.14540 8.33868 8.43122 9.54501 10.11683 10.46872 11.46752 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.001912 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.110261 B =14640.824395 C =15791.920421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.469 5.469 3 C 0.155 3.845 4 N -0.296 5.296 5 N -0.269 5.269 6 C 0.174 3.826 7 C 0.150 3.850 8 O -0.356 6.356 9 C 0.044 3.956 10 C 0.512 3.488 11 O -0.519 6.519 12 N -0.716 5.716 13 C 0.147 3.853 14 H 0.094 0.906 15 C -0.130 4.130 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.102 4.102 19 H 0.078 0.922 20 C 0.160 3.840 21 N -0.730 5.730 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.222 0.778 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.400 0.600 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.018 0.982 46 H 0.022 0.978 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 22.245 -16.638 31.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.160 5.160 3 C -0.132 4.132 4 N -0.136 5.136 5 N -0.111 5.111 6 C -0.093 4.093 7 C 0.071 3.929 8 O -0.273 6.273 9 C -0.036 4.036 10 C 0.297 3.703 11 O -0.393 6.393 12 N -0.370 5.370 13 C 0.043 3.957 14 H 0.112 0.888 15 C -0.168 4.168 16 C -0.163 4.163 17 C -0.150 4.150 18 C -0.122 4.122 19 H 0.096 0.904 20 C 0.033 3.967 21 N -0.374 5.374 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.238 0.762 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.234 0.766 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.036 0.964 46 H 0.040 0.960 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.376 22.951 -15.710 30.442 hybrid contribution -1.053 -1.001 -0.159 1.462 sum -13.429 21.950 -15.869 30.232 Atomic orbital electron populations 1.22184 0.75021 1.05948 1.04177 1.46184 1.09433 1.06700 1.53715 1.26526 0.87184 0.94968 1.04510 1.74320 1.18094 1.03071 1.18066 1.74293 1.16903 1.03303 1.16632 1.24272 0.87454 0.91363 1.06197 1.20504 1.01078 0.86071 0.85289 1.88091 1.89344 1.25687 1.24187 1.22288 1.01250 0.84433 0.95643 1.20092 0.77423 0.82658 0.90166 1.90758 1.47841 1.49340 1.51382 1.46065 1.69726 1.12129 1.09044 1.21697 0.97766 0.95800 0.80476 0.88810 1.22736 0.95079 0.97485 1.01527 1.22539 0.97918 0.94927 1.00895 1.22378 0.92879 0.98051 1.01691 1.22224 0.96947 0.92373 1.00609 0.90374 1.20741 0.93195 0.87395 0.95402 1.42309 1.38907 1.00304 1.55926 1.19198 1.07475 0.90714 1.19580 0.91263 1.24725 0.99648 0.96006 1.00638 1.69647 1.41200 1.02468 1.45045 0.86262 0.81940 0.77769 0.80193 1.21273 1.21713 1.21271 0.89718 0.88702 0.88585 0.76209 0.91015 0.88939 0.89988 0.89406 0.76584 0.90720 0.91810 0.92011 0.91754 0.91224 0.90752 0.96371 0.96007 0.78284 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.17 10.89 59.84 0.65 0.83 16 2 N -0.47 -3.46 3.15 -122.69 -0.39 -3.84 16 3 C 0.16 1.25 12.74 -89.94 -1.15 0.11 16 4 N -0.30 -3.80 12.21 29.69 0.36 -3.43 16 5 N -0.27 -3.73 12.21 32.80 0.40 -3.33 16 6 C 0.17 1.80 7.66 -154.99 -1.19 0.61 16 7 C 0.15 1.12 6.11 36.01 0.22 1.34 16 8 O -0.36 -3.86 9.86 -55.14 -0.54 -4.40 16 9 C 0.04 0.35 6.42 36.01 0.23 0.58 16 10 C 0.51 6.31 7.90 -10.99 -0.09 6.22 16 11 O -0.52 -9.02 16.15 -14.36 -0.23 -9.25 16 12 N -0.72 -7.79 5.03 -52.72 -0.27 -8.05 16 13 C 0.15 1.96 2.90 -66.81 -0.19 1.76 16 14 H 0.09 1.49 7.09 -51.93 -0.37 1.12 16 15 C -0.13 -1.53 6.54 -25.07 -0.16 -1.69 16 16 C -0.13 -1.39 6.91 -24.74 -0.17 -1.56 16 17 C -0.11 -1.59 6.08 -25.07 -0.15 -1.74 16 18 C -0.10 -1.54 2.72 -89.50 -0.24 -1.78 16 19 H 0.08 1.15 7.62 -51.93 -0.40 0.76 16 20 C 0.16 3.21 5.32 -4.04 -0.02 3.19 16 21 N -0.73 -18.22 5.45 -59.91 -0.33 -18.55 16 22 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 26 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.09 0.25 7.82 -51.93 -0.41 -0.16 16 32 H 0.10 0.07 8.14 -51.93 -0.42 -0.36 16 33 H 0.22 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.07 0.26 7.87 -51.93 -0.41 -0.15 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.40 3.19 8.32 -40.82 -0.34 2.85 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 1.18 7.76 -51.93 -0.40 0.78 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 47 H 0.38 9.91 7.55 -40.82 -0.31 9.60 16 48 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 401.39 15.07 6.05 6.05 Total: -1.00 -39.87 401.39 -9.41 -49.28 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.66 Total: 4.79 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.51 Total: 0.48 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: 0.51 Total: -64.53 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.78 Total: -13.65 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.87 -9.41 -49.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320169571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.467 kcal (2) G-P(sol) polarization free energy of solvation -39.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds