Wall clock time and date at job start Tue Mar 31 2020 21:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35492 * 126.98168 * 2 1 4 4 N 1.30526 * 107.30762 * 179.77439 * 3 2 1 5 5 N 1.28594 * 109.66842 * 0.22713 * 4 3 2 6 6 C 1.30514 * 109.67896 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.34899 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47036 * 89.98302 * 7 6 5 9 9 C 1.42900 * 113.99980 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47264 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00060 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.01251 * 326.38940 * 13 12 10 15 15 C 1.54272 * 110.03319 * 87.83132 * 13 12 10 16 16 C 1.54889 * 104.19406 * 95.67437 * 15 13 12 17 17 C 1.54884 * 102.74930 * 37.94372 * 16 15 13 18 18 C 1.53870 * 110.03159 * 204.99877 * 13 12 10 19 19 H 1.08997 * 110.03349 * 359.97438 * 18 13 12 20 20 C 1.53003 * 110.03143 * 121.38291 * 18 13 12 21 21 N 1.46501 * 109.46578 * 184.99961 * 20 18 13 22 22 C 1.36943 * 119.99538 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00103 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99957 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00104 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00065 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47215 * 60.00030 * 26 24 22 28 28 H 1.48500 * 109.47343 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47074 * 299.99855 * 26 24 22 30 30 H 1.08997 * 109.47529 * 90.02432 * 1 2 3 31 31 H 1.08999 * 109.47709 * 210.02442 * 1 2 3 32 32 H 1.09005 * 109.47242 * 330.02465 * 1 2 3 33 33 H 1.08002 * 126.34907 * 0.04187 * 3 2 1 34 34 H 1.09001 * 109.46856 * 209.98123 * 7 6 5 35 35 H 1.08996 * 109.47063 * 329.97867 * 7 6 5 36 36 H 1.08997 * 109.47332 * 299.99593 * 9 8 7 37 37 H 1.09005 * 109.47142 * 60.00180 * 9 8 7 38 38 H 0.96998 * 120.00268 * 0.02562 * 12 10 9 39 39 H 1.08995 * 110.48576 * 214.35426 * 15 13 12 40 40 H 1.08998 * 110.47979 * 336.99723 * 15 13 12 41 41 H 1.08995 * 110.75685 * 279.63013 * 16 15 13 42 42 H 1.09002 * 110.91185 * 156.33409 * 16 15 13 43 43 H 1.09003 * 110.48659 * 203.37911 * 17 16 15 44 44 H 1.08998 * 110.49257 * 80.73275 * 17 16 15 45 45 H 1.08997 * 109.47014 * 304.99465 * 20 18 13 46 46 H 1.08993 * 109.47261 * 65.00254 * 20 18 13 47 47 H 0.97001 * 120.00799 * 359.97438 * 21 20 18 48 48 H 0.97006 * 119.99969 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.0823 0.0000 4 7 3.5090 0.6429 0.0049 5 7 3.5089 -0.6430 0.0032 6 6 2.2800 -1.0824 -0.0024 7 6 1.8476 -2.5261 -0.0067 8 8 1.7061 -2.9849 1.3392 9 6 1.2975 -4.3499 1.4480 10 6 1.1813 -4.7250 2.9030 11 8 1.4240 -3.9041 3.7622 12 7 0.8077 -5.9727 3.2494 13 6 0.6942 -6.3372 4.6639 14 1 1.4434 -5.8029 5.2481 15 6 -0.7195 -6.0036 5.1838 16 6 -1.4955 -7.3381 5.0569 17 6 -0.4305 -8.3916 5.4502 18 6 0.8779 -7.8555 4.8333 19 1 1.0511 -8.3212 3.8631 20 6 2.0547 -8.1398 5.7688 21 7 2.2940 -9.5840 5.8274 22 6 3.3052 -10.0793 6.6068 23 1 3.9265 -9.4054 7.1779 24 6 3.5316 -11.4477 6.6628 25 7 2.7747 -12.2690 5.9664 26 14 4.9105 -12.1235 7.7264 27 1 4.6769 -11.7403 9.1420 28 1 4.9433 -13.6038 7.6128 29 1 6.2079 -11.5636 7.2696 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3634 0.8902 0.5135 33 1 1.9702 2.1170 0.0006 34 1 0.8926 -2.6177 -0.5241 35 1 2.5977 -3.1285 -0.5190 36 1 0.3312 -4.4799 0.9607 37 1 2.0366 -4.9899 0.9661 38 1 0.6139 -6.6294 2.5623 39 1 -0.6774 -5.6843 6.2251 40 1 -1.1812 -5.2335 4.5659 41 1 -1.8321 -7.4932 4.0319 42 1 -2.3388 -7.3649 5.7470 43 1 -0.6814 -9.3642 5.0268 44 1 -0.3417 -8.4580 6.5346 45 1 2.9468 -7.6387 5.3931 46 1 1.8230 -7.7691 6.7672 47 1 1.7362 -10.1893 5.3142 48 1 2.9332 -13.2253 6.0053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320169571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:52 Heat of formation + Delta-G solvation = -16.983009 kcal Electronic energy + Delta-G solvation = -28451.924483 eV Core-core repulsion = 24349.715583 eV Total energy + Delta-G solvation = -4102.208900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.14596 -41.18700 -39.53659 -38.45662 -36.32706 -36.01681 -34.63988 -33.26615 -32.72182 -30.31361 -29.98916 -28.65420 -28.15081 -27.00776 -26.16963 -23.90493 -23.41631 -22.29731 -22.02489 -21.13205 -20.82961 -19.26145 -18.48824 -18.16426 -17.77665 -17.52876 -17.30421 -16.83445 -16.44872 -16.32825 -16.04676 -15.97768 -15.45940 -15.23314 -15.11321 -14.95347 -14.57768 -14.37709 -14.27491 -13.66275 -13.40476 -13.27688 -13.17677 -13.02513 -12.81260 -12.60385 -12.55044 -12.46613 -12.20187 -11.93059 -11.86774 -11.72643 -11.62625 -11.45093 -11.44910 -11.13937 -10.95037 -10.87374 -10.84455 -10.44705 -10.06711 -9.00926 -7.96573 -5.24795 0.61815 1.46354 1.48829 1.51295 1.55042 1.59222 1.69181 1.99238 2.54785 2.90055 3.36122 3.44700 3.48486 3.64572 3.68087 3.78903 3.85848 3.92245 3.97317 4.14874 4.20023 4.25372 4.33271 4.40478 4.41359 4.48098 4.53650 4.59304 4.65205 4.67938 4.69694 4.78385 4.85831 4.99492 5.01829 5.06878 5.09175 5.19068 5.26533 5.37497 5.47283 5.51351 5.60553 5.84246 5.92831 6.26000 6.58019 7.26544 7.33154 7.64490 8.07288 8.33668 9.26148 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.001912 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.110261 B =14640.824395 C =15791.920421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.465 5.465 3 C 0.168 3.832 4 N -0.354 5.354 5 N -0.329 5.329 6 C 0.165 3.835 7 C 0.150 3.850 8 O -0.395 6.395 9 C 0.049 3.951 10 C 0.507 3.493 11 O -0.579 6.579 12 N -0.704 5.704 13 C 0.153 3.847 14 H 0.062 0.938 15 C -0.123 4.123 16 C -0.109 4.109 17 C -0.112 4.112 18 C -0.090 4.090 19 H 0.086 0.914 20 C 0.160 3.840 21 N -0.738 5.738 22 C -0.251 4.251 23 H 0.068 0.932 24 C -0.070 4.070 25 N -0.964 5.964 26 Si 0.971 3.029 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.265 0.735 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.418 0.582 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.006 0.994 46 H 0.015 0.985 47 H 0.378 0.622 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.659 22.800 -18.278 33.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.155 5.155 3 C -0.121 4.121 4 N -0.193 5.193 5 N -0.171 5.171 6 C -0.105 4.105 7 C 0.071 3.929 8 O -0.313 6.313 9 C -0.030 4.030 10 C 0.294 3.706 11 O -0.458 6.458 12 N -0.358 5.358 13 C 0.047 3.953 14 H 0.080 0.920 15 C -0.162 4.162 16 C -0.146 4.146 17 C -0.150 4.150 18 C -0.109 4.109 19 H 0.104 0.896 20 C 0.033 3.967 21 N -0.381 5.381 22 C -0.382 4.382 23 H 0.086 0.914 24 C -0.263 4.263 25 N -0.614 5.614 26 Si 0.800 3.200 27 H -0.206 1.206 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.281 0.719 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.255 0.745 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.024 0.976 46 H 0.033 0.967 47 H 0.210 0.790 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.845 23.508 -17.380 32.788 hybrid contribution -0.332 -1.101 0.364 1.206 sum -15.177 22.406 -17.016 31.968 Atomic orbital electron populations 1.22580 0.71997 1.07110 1.06260 1.46475 1.11097 1.05587 1.52380 1.27334 0.86167 0.96764 1.01800 1.74169 1.21077 1.03204 1.20864 1.74147 1.19607 1.04193 1.19140 1.24794 0.87189 0.93196 1.05290 1.20776 1.03489 0.84393 0.84193 1.88024 1.89955 1.27016 1.26289 1.22416 1.04470 0.83735 0.92377 1.20952 0.75837 0.82014 0.91811 1.90736 1.50521 1.51047 1.53461 1.45894 1.69056 1.12453 1.08349 1.21402 0.98109 0.93830 0.81916 0.91981 1.22670 0.93915 0.98301 1.01268 1.22468 0.96949 0.92585 1.02606 1.22318 0.93528 0.98983 1.00135 1.22056 0.95313 0.93872 0.99639 0.89586 1.20843 0.94893 0.84637 0.96336 1.42434 1.38161 1.02122 1.55348 1.19547 1.07988 0.91114 1.19593 0.91404 1.25504 1.02183 0.96331 1.02289 1.69783 1.42739 1.02399 1.46495 0.85255 0.79219 0.76815 0.78718 1.20572 1.21707 1.20708 0.87099 0.88508 0.86556 0.71930 0.86489 0.88452 0.85090 0.87213 0.74469 0.91462 0.90648 0.89600 0.90434 0.91652 0.93018 0.97583 0.96711 0.78962 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.10 10.89 127.77 1.39 1.49 16 2 N -0.47 -6.02 3.15 -542.08 -1.71 -7.72 16 3 C 0.17 2.52 12.74 180.11 2.30 4.82 16 4 N -0.35 -9.37 12.21 -59.99 -0.73 -10.11 16 5 N -0.33 -9.47 12.21 -50.15 -0.61 -10.09 16 6 C 0.16 3.28 7.66 137.98 1.06 4.34 16 7 C 0.15 1.92 6.11 71.24 0.43 2.35 16 8 O -0.39 -7.91 9.86 -129.94 -1.28 -9.19 16 9 C 0.05 0.64 6.42 71.24 0.46 1.10 16 10 C 0.51 11.81 7.90 87.66 0.69 12.51 16 11 O -0.58 -20.40 16.15 15.98 0.26 -20.15 16 12 N -0.70 -14.03 5.03 -439.09 -2.21 -16.24 16 13 C 0.15 4.00 2.90 45.71 0.13 4.13 16 14 H 0.06 2.05 7.09 -2.39 -0.02 2.03 16 15 C -0.12 -2.71 6.54 31.67 0.21 -2.50 16 16 C -0.11 -2.12 6.91 31.88 0.22 -1.90 16 17 C -0.11 -3.08 6.08 31.67 0.19 -2.89 16 18 C -0.09 -2.66 2.72 -10.07 -0.03 -2.69 16 19 H 0.09 2.43 7.62 -2.39 -0.02 2.41 16 20 C 0.16 6.56 5.32 86.38 0.46 7.02 16 21 N -0.74 -37.51 5.45 -343.45 -1.87 -39.38 16 22 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 23 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 24 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 25 N -0.96 -58.30 13.06 21.65 0.28 -58.02 16 26 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 28 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 29 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 30 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.10 0.18 7.82 -2.39 -0.02 0.16 16 32 H 0.12 -0.26 8.14 -2.38 -0.02 -0.28 16 33 H 0.27 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.12 0.36 7.87 -2.39 -0.02 0.34 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.42 5.37 8.32 -92.71 -0.77 4.60 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.65 7.76 -2.39 -0.02 1.63 16 45 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.01 0.63 8.01 -2.39 -0.02 0.61 16 47 H 0.38 19.84 7.55 -92.71 -0.70 19.14 16 48 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 Total: -1.00 -92.61 401.39 2.48 -90.12 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -0.49 Total: 21.33 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 8.82 Total: 10.72 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -6.85 Total: -141.55 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -1.02 Total: -29.33 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -92.61 2.48 -90.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320169571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.140 kcal (2) G-P(sol) polarization free energy of solvation -92.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds