Wall clock time and date at job start Tue Mar 31 2020 21:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35491 * 126.98044 * 2 1 4 4 N 1.30519 * 107.30933 * 180.22397 * 3 2 1 5 5 N 1.28602 * 109.66863 * 359.77642 * 4 3 2 6 6 C 1.30516 * 109.67387 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.34693 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47510 * 90.02430 * 7 6 5 9 9 C 1.42895 * 114.00147 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46744 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00124 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99969 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00255 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.05683 * 33.58217 * 13 12 10 15 15 C 1.53880 * 110.03287 * 272.16559 * 13 12 10 16 16 C 1.54261 * 106.60017 * 240.71564 * 15 13 12 17 17 C 1.55034 * 104.28207 * 23.51533 * 16 15 13 18 18 C 1.54269 * 110.03278 * 155.00116 * 13 12 10 19 19 H 1.09008 * 110.48340 * 214.48260 * 18 13 12 20 20 C 1.52996 * 110.48763 * 336.99324 * 18 13 12 21 21 N 1.46498 * 109.47059 * 183.15934 * 20 18 13 22 22 C 1.36943 * 119.99752 * 179.72430 * 21 20 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 20 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 20 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 H 1.09004 * 109.46936 * 270.15687 * 1 2 3 31 31 H 1.09005 * 109.47286 * 30.15076 * 1 2 3 32 32 H 1.08990 * 109.47269 * 150.15706 * 1 2 3 33 33 H 1.08008 * 126.34798 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.47040 * 330.02072 * 7 6 5 35 35 H 1.09002 * 109.47279 * 210.02840 * 7 6 5 36 36 H 1.08997 * 109.47077 * 60.00223 * 9 8 7 37 37 H 1.08994 * 109.47227 * 299.99847 * 9 8 7 38 38 H 0.97007 * 119.99852 * 359.97438 * 12 10 9 39 39 H 1.09002 * 110.02792 * 0.02562 * 15 13 12 40 40 H 1.09002 * 110.02977 * 121.37605 * 15 13 12 41 41 H 1.08996 * 110.49022 * 142.28686 * 16 15 13 42 42 H 1.09004 * 110.48728 * 264.79679 * 16 15 13 43 43 H 1.08995 * 110.87417 * 203.90095 * 17 16 15 44 44 H 1.09003 * 110.69616 * 80.48668 * 17 16 15 45 45 H 1.09004 * 109.47066 * 63.16202 * 20 18 13 46 46 H 1.08994 * 109.46974 * 303.16349 * 20 18 13 47 47 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 48 48 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5090 -0.6430 -0.0032 6 6 2.2800 -1.0824 0.0034 7 6 1.8476 -2.5260 0.0069 8 8 1.7172 -2.9810 1.3552 9 6 1.3095 -4.3456 1.4713 10 6 1.2041 -4.7161 2.9282 11 8 1.4540 -3.8928 3.7830 12 7 0.8321 -5.9625 3.2814 13 6 0.7291 -6.3225 4.6977 14 1 0.3975 -5.4622 5.2790 15 6 2.0912 -6.8159 5.2166 16 6 1.8821 -8.2688 5.6908 17 6 0.6392 -8.7538 4.9012 18 6 -0.2601 -7.4930 4.8747 19 1 -0.8049 -7.3933 5.8136 20 6 -1.2336 -7.5543 3.6961 21 7 -2.2084 -8.6242 3.9230 22 6 -3.1888 -8.8647 2.9977 23 1 -3.2407 -8.2686 2.0986 24 6 -4.1159 -9.8747 3.2153 25 7 -4.0529 -10.6008 4.3114 26 14 -5.4529 -10.2032 1.9529 27 1 -4.8295 -10.5625 0.6538 28 1 -6.3087 -11.3239 2.4184 29 1 -6.2836 -8.9841 1.7830 30 1 -0.3633 0.0028 1.0277 31 1 -0.3634 0.8887 -0.5162 32 1 -0.3633 -0.8913 -0.5113 33 1 1.9702 2.1170 -0.0004 34 1 2.5935 -3.1299 -0.5098 35 1 0.8885 -2.6192 -0.5025 36 1 2.0446 -4.9870 0.9851 37 1 0.3393 -4.4770 0.9922 38 1 0.6319 -6.6209 2.5977 39 1 2.8289 -6.7869 4.4147 40 1 2.4209 -6.1943 6.0490 41 1 2.7519 -8.8787 5.4467 42 1 1.6873 -8.2959 6.7630 43 1 0.1425 -9.5717 5.4230 44 1 0.9172 -9.0513 3.8901 45 1 -0.6809 -7.7551 2.7783 46 1 -1.7547 -6.6013 3.6053 47 1 -2.1620 -9.1594 4.7307 48 1 -4.7005 -11.3067 4.4633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320169580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:11 Heat of formation + Delta-G solvation = 14.999524 kcal Electronic energy + Delta-G solvation = -28808.697728 eV Core-core repulsion = 24707.875695 eV Total energy + Delta-G solvation = -4100.822033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.45870 -40.19577 -38.57633 -37.44330 -35.42983 -34.45172 -33.52410 -32.02474 -31.48187 -29.27542 -28.60803 -28.14976 -27.31434 -26.11942 -24.53287 -22.75487 -22.39678 -21.41566 -21.03575 -20.33561 -19.27142 -17.96311 -17.51733 -17.33115 -16.94494 -16.69710 -16.30583 -15.79431 -15.49734 -15.16671 -14.87280 -14.80636 -14.40266 -14.26473 -13.86970 -13.68059 -13.66253 -13.32063 -13.08549 -12.90141 -12.67552 -12.34370 -12.24940 -11.83777 -11.56626 -11.28993 -10.91789 -10.90194 -10.83283 -10.73930 -10.58390 -10.53787 -10.39792 -10.37418 -10.20853 -10.06144 -9.86040 -9.74907 -9.63150 -8.99541 -8.93795 -6.99659 -5.83307 -3.12371 1.27227 2.04000 2.40969 2.58545 2.84945 3.37621 3.42054 3.43740 3.59842 4.05890 4.16570 4.19304 4.38247 4.47685 4.54615 4.59648 4.70060 4.77080 4.80201 4.84945 4.90327 4.92510 5.05100 5.14312 5.42801 5.45847 5.48659 5.60867 5.64931 5.72056 5.75144 5.82643 5.89953 6.04495 6.06558 6.17321 6.25962 6.38008 6.45066 6.48310 6.50819 6.63568 6.68743 6.76747 7.51829 7.60872 8.22192 8.35378 8.37170 9.46588 10.04230 10.38742 11.39300 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.002326 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.788717 B =12032.440309 C =14024.050119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.468 5.468 3 C 0.155 3.845 4 N -0.297 5.297 5 N -0.272 5.272 6 C 0.176 3.824 7 C 0.149 3.851 8 O -0.356 6.356 9 C 0.043 3.957 10 C 0.514 3.486 11 O -0.524 6.524 12 N -0.715 5.715 13 C 0.151 3.849 14 H 0.089 0.911 15 C -0.132 4.132 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.107 4.107 19 H 0.088 0.912 20 C 0.165 3.835 21 N -0.729 5.729 22 C -0.242 4.242 23 H 0.068 0.932 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.221 0.779 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.405 0.595 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.015 0.985 46 H 0.019 0.981 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.248 16.499 -8.187 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.159 5.159 3 C -0.132 4.132 4 N -0.137 5.137 5 N -0.114 5.114 6 C -0.092 4.092 7 C 0.070 3.930 8 O -0.273 6.273 9 C -0.037 4.037 10 C 0.298 3.702 11 O -0.399 6.399 12 N -0.370 5.370 13 C 0.046 3.954 14 H 0.107 0.893 15 C -0.170 4.170 16 C -0.163 4.163 17 C -0.150 4.150 18 C -0.127 4.127 19 H 0.106 0.894 20 C 0.037 3.963 21 N -0.374 5.374 22 C -0.374 4.374 23 H 0.086 0.914 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.238 0.762 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.242 0.758 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.032 0.968 46 H 0.037 0.963 47 H 0.219 0.781 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.826 17.220 -7.552 22.213 hybrid contribution -2.510 -0.726 -0.939 2.776 sum 9.316 16.494 -8.490 20.759 Atomic orbital electron populations 1.22200 0.74850 1.05278 1.04967 1.46195 1.09526 1.06701 1.53479 1.26511 0.87162 0.94980 1.04589 1.74298 1.18110 1.03088 1.18189 1.74274 1.16903 1.03306 1.16926 1.24257 0.87428 0.91416 1.06057 1.20504 1.01125 0.86020 0.85347 1.88076 1.89375 1.25844 1.23992 1.22294 1.01505 0.84242 0.95672 1.20081 0.77433 0.82526 0.90122 1.90733 1.48066 1.49354 1.51788 1.46155 1.69305 1.12299 1.09277 1.21621 0.95111 0.97941 0.80745 0.89311 1.22573 0.96919 0.96593 1.00944 1.22412 0.98466 0.95339 1.00106 1.22525 0.94596 0.97372 1.00462 1.22484 0.95561 0.93550 1.01072 0.89401 1.20565 0.89854 0.92318 0.93555 1.42336 1.32348 1.37928 1.24760 1.19143 1.05154 1.13264 0.99792 0.91357 1.24746 0.99596 0.98795 0.97735 1.69646 1.38366 1.23784 1.26184 0.86275 0.81797 0.77425 0.80690 1.21278 1.21658 1.21318 0.89259 0.88678 0.88932 0.76228 0.89043 0.90931 0.89582 0.89634 0.75764 0.91510 0.91438 0.91889 0.91657 0.90757 0.91428 0.96798 0.96327 0.78148 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.04 59.85 0.66 0.92 16 2 N -0.47 -3.82 3.15 -122.69 -0.39 -4.20 16 3 C 0.15 1.33 12.74 -89.95 -1.15 0.18 16 4 N -0.30 -3.88 12.21 29.69 0.36 -3.52 16 5 N -0.27 -3.82 12.21 32.79 0.40 -3.42 16 6 C 0.18 1.91 7.66 -154.99 -1.19 0.72 16 7 C 0.15 1.24 6.29 36.00 0.23 1.47 16 8 O -0.36 -4.15 9.86 -55.14 -0.54 -4.69 16 9 C 0.04 0.40 6.42 36.01 0.23 0.63 16 10 C 0.51 6.77 7.90 -10.98 -0.09 6.68 16 11 O -0.52 -9.26 16.15 -14.35 -0.23 -9.50 16 12 N -0.72 -8.66 4.34 -52.72 -0.23 -8.89 16 13 C 0.15 2.01 3.12 -66.81 -0.21 1.80 16 14 H 0.09 1.31 7.57 -51.93 -0.39 0.92 16 15 C -0.13 -1.59 6.59 -25.61 -0.17 -1.76 16 16 C -0.13 -1.47 6.83 -25.00 -0.17 -1.64 16 17 C -0.11 -1.56 6.11 -24.66 -0.15 -1.71 16 18 C -0.11 -1.60 2.86 -88.96 -0.25 -1.86 16 19 H 0.09 1.38 8.14 -51.92 -0.42 0.96 16 20 C 0.17 2.99 4.80 -4.04 -0.02 2.97 16 21 N -0.73 -17.31 5.47 -59.91 -0.33 -17.64 16 22 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 26 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.09 0.23 7.19 -51.93 -0.37 -0.14 16 33 H 0.22 0.80 8.06 -52.48 -0.42 0.37 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.36 7.21 -51.93 -0.37 -0.01 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.41 4.32 6.51 -40.82 -0.27 4.06 16 39 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.07 0.95 8.00 -51.93 -0.42 0.54 16 45 H 0.01 0.24 6.34 -51.93 -0.33 -0.09 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 9.69 7.58 -40.82 -0.31 9.38 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -37.99 397.26 -9.28 -47.27 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.49 Total: 7.23 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.52 Total: 1.36 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 0.55 Total: -64.23 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.78 Total: -14.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.99 -9.28 -47.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320169580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.265 kcal (2) G-P(sol) polarization free energy of solvation -37.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds