Wall clock time and date at job start Tue Mar 31 2020 21:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35491 * 126.98044 * 2 1 4 4 N 1.30519 * 107.30933 * 180.22397 * 3 2 1 5 5 N 1.28602 * 109.66863 * 359.77642 * 4 3 2 6 6 C 1.30516 * 109.67387 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.34693 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47510 * 90.02430 * 7 6 5 9 9 C 1.42895 * 114.00147 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46744 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00124 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99969 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00255 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.05683 * 33.58217 * 13 12 10 15 15 C 1.53880 * 110.03287 * 272.16559 * 13 12 10 16 16 C 1.54261 * 106.60017 * 240.71564 * 15 13 12 17 17 C 1.55034 * 104.28207 * 23.51533 * 16 15 13 18 18 C 1.54269 * 110.03278 * 155.00116 * 13 12 10 19 19 H 1.09008 * 110.48340 * 214.48260 * 18 13 12 20 20 C 1.52996 * 110.48763 * 336.99324 * 18 13 12 21 21 N 1.46498 * 109.47059 * 183.15934 * 20 18 13 22 22 C 1.36943 * 119.99752 * 179.72430 * 21 20 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 20 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 20 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 H 1.09004 * 109.46936 * 270.15687 * 1 2 3 31 31 H 1.09005 * 109.47286 * 30.15076 * 1 2 3 32 32 H 1.08990 * 109.47269 * 150.15706 * 1 2 3 33 33 H 1.08008 * 126.34798 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.47040 * 330.02072 * 7 6 5 35 35 H 1.09002 * 109.47279 * 210.02840 * 7 6 5 36 36 H 1.08997 * 109.47077 * 60.00223 * 9 8 7 37 37 H 1.08994 * 109.47227 * 299.99847 * 9 8 7 38 38 H 0.97007 * 119.99852 * 359.97438 * 12 10 9 39 39 H 1.09002 * 110.02792 * 0.02562 * 15 13 12 40 40 H 1.09002 * 110.02977 * 121.37605 * 15 13 12 41 41 H 1.08996 * 110.49022 * 142.28686 * 16 15 13 42 42 H 1.09004 * 110.48728 * 264.79679 * 16 15 13 43 43 H 1.08995 * 110.87417 * 203.90095 * 17 16 15 44 44 H 1.09003 * 110.69616 * 80.48668 * 17 16 15 45 45 H 1.09004 * 109.47066 * 63.16202 * 20 18 13 46 46 H 1.08994 * 109.46974 * 303.16349 * 20 18 13 47 47 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 48 48 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5090 -0.6430 -0.0032 6 6 2.2800 -1.0824 0.0034 7 6 1.8476 -2.5260 0.0069 8 8 1.7172 -2.9810 1.3552 9 6 1.3095 -4.3456 1.4713 10 6 1.2041 -4.7161 2.9282 11 8 1.4540 -3.8928 3.7830 12 7 0.8321 -5.9625 3.2814 13 6 0.7291 -6.3225 4.6977 14 1 0.3975 -5.4622 5.2790 15 6 2.0912 -6.8159 5.2166 16 6 1.8821 -8.2688 5.6908 17 6 0.6392 -8.7538 4.9012 18 6 -0.2601 -7.4930 4.8747 19 1 -0.8049 -7.3933 5.8136 20 6 -1.2336 -7.5543 3.6961 21 7 -2.2084 -8.6242 3.9230 22 6 -3.1888 -8.8647 2.9977 23 1 -3.2407 -8.2686 2.0986 24 6 -4.1159 -9.8747 3.2153 25 7 -4.0529 -10.6008 4.3114 26 14 -5.4529 -10.2032 1.9529 27 1 -4.8295 -10.5625 0.6538 28 1 -6.3087 -11.3239 2.4184 29 1 -6.2836 -8.9841 1.7830 30 1 -0.3633 0.0028 1.0277 31 1 -0.3634 0.8887 -0.5162 32 1 -0.3633 -0.8913 -0.5113 33 1 1.9702 2.1170 -0.0004 34 1 2.5935 -3.1299 -0.5098 35 1 0.8885 -2.6192 -0.5025 36 1 2.0446 -4.9870 0.9851 37 1 0.3393 -4.4770 0.9922 38 1 0.6319 -6.6209 2.5977 39 1 2.8289 -6.7869 4.4147 40 1 2.4209 -6.1943 6.0490 41 1 2.7519 -8.8787 5.4467 42 1 1.6873 -8.2959 6.7630 43 1 0.1425 -9.5717 5.4230 44 1 0.9172 -9.0513 3.8901 45 1 -0.6809 -7.7551 2.7783 46 1 -1.7547 -6.6013 3.6053 47 1 -2.1620 -9.1594 4.7307 48 1 -4.7005 -11.3067 4.4633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320169580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:10 Heat of formation + Delta-G solvation = -10.496543 kcal Electronic energy + Delta-G solvation = -28809.803320 eV Core-core repulsion = 24707.875695 eV Total energy + Delta-G solvation = -4101.927626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.15363 -41.25694 -39.53401 -38.42106 -36.21986 -36.02826 -34.60890 -33.28846 -32.73226 -30.30772 -29.98611 -28.65360 -28.11689 -26.92515 -26.21594 -24.04062 -23.41917 -22.17742 -21.95712 -21.40403 -20.50972 -19.24055 -18.65485 -18.08979 -17.91931 -17.40268 -17.15089 -16.76955 -16.52783 -16.20629 -16.15764 -15.84017 -15.52470 -15.23690 -15.12669 -14.96358 -14.55283 -14.39622 -14.31707 -13.71019 -13.59380 -13.23782 -13.10321 -12.99836 -12.77172 -12.63010 -12.60263 -12.27047 -12.20356 -11.97193 -11.79396 -11.62824 -11.53653 -11.46572 -11.45302 -11.17059 -10.89396 -10.86728 -10.85819 -10.44528 -10.06912 -8.95853 -7.91555 -5.19887 0.61353 1.50042 1.50391 1.52493 1.58536 1.59311 1.68327 1.99849 2.58472 2.89171 3.39417 3.43310 3.49720 3.66203 3.69066 3.79907 3.84410 3.89361 3.93284 4.16617 4.20823 4.25102 4.30651 4.38449 4.40095 4.52168 4.56698 4.57901 4.58328 4.68411 4.70591 4.79233 4.87223 4.87498 5.04442 5.07678 5.12904 5.24506 5.28293 5.38871 5.48811 5.54052 5.56438 5.82674 5.91149 6.30058 6.55524 7.23925 7.37115 7.63131 8.13692 8.35992 9.31775 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.002326 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.788717 B =12032.440309 C =14024.050119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.466 5.466 3 C 0.167 3.833 4 N -0.351 5.351 5 N -0.324 5.324 6 C 0.165 3.835 7 C 0.148 3.852 8 O -0.392 6.392 9 C 0.046 3.954 10 C 0.510 3.490 11 O -0.576 6.576 12 N -0.707 5.707 13 C 0.156 3.844 14 H 0.072 0.928 15 C -0.125 4.125 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.099 4.099 19 H 0.075 0.925 20 C 0.166 3.834 21 N -0.743 5.743 22 C -0.241 4.241 23 H 0.079 0.921 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.972 3.028 27 H -0.275 1.275 28 H -0.300 1.300 29 H -0.279 1.279 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.265 0.735 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.414 0.586 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.036 0.964 46 H 0.013 0.987 47 H 0.374 0.626 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.731 17.076 -10.245 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.156 5.156 3 C -0.121 4.121 4 N -0.190 5.190 5 N -0.167 5.167 6 C -0.104 4.104 7 C 0.070 3.930 8 O -0.310 6.310 9 C -0.033 4.033 10 C 0.297 3.703 11 O -0.455 6.455 12 N -0.362 5.362 13 C 0.051 3.949 14 H 0.090 0.910 15 C -0.164 4.164 16 C -0.152 4.152 17 C -0.146 4.146 18 C -0.119 4.119 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.385 5.385 22 C -0.373 4.373 23 H 0.097 0.903 24 C -0.269 4.269 25 N -0.620 5.620 26 Si 0.801 3.199 27 H -0.201 1.201 28 H -0.227 1.227 29 H -0.206 1.206 30 H 0.104 0.896 31 H 0.144 0.856 32 H 0.126 0.874 33 H 0.280 0.720 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.253 0.747 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.031 0.969 47 H 0.206 0.794 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.317 17.811 -9.657 23.207 hybrid contribution -2.365 -0.809 -0.286 2.516 sum 8.952 17.002 -9.943 21.635 Atomic orbital electron populations 1.22556 0.72181 1.07683 1.05452 1.46475 1.11023 1.05775 1.52348 1.27332 0.86173 0.96721 1.01857 1.74163 1.20867 1.03189 1.20804 1.74140 1.19271 1.04141 1.19109 1.24735 0.87241 0.93082 1.05356 1.20773 1.03376 0.84638 0.84225 1.88015 1.89873 1.26970 1.26096 1.22405 1.04157 0.83943 0.92759 1.20837 0.76011 0.81835 0.91634 1.90712 1.50452 1.50735 1.53636 1.46067 1.68788 1.12501 1.08853 1.21445 0.95343 0.96471 0.81646 0.91024 1.22510 0.96010 0.96729 1.01116 1.22348 0.97861 0.95022 1.00016 1.22460 0.95227 0.96176 1.00772 1.22342 0.95300 0.95006 0.99224 0.90673 1.20710 0.89445 0.90208 0.95662 1.42556 1.33051 1.38982 1.23928 1.19601 1.05096 1.12453 1.00182 0.90267 1.25556 1.02261 0.99366 0.99749 1.69811 1.39340 1.24644 1.28246 0.85240 0.79050 0.76926 0.78705 1.20066 1.22679 1.20572 0.89620 0.85565 0.87407 0.71958 0.88026 0.87132 0.86545 0.86414 0.74680 0.90960 0.91366 0.90193 0.91184 0.92571 0.91207 0.94631 0.96909 0.79436 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 11.04 127.77 1.41 1.69 16 2 N -0.47 -6.78 3.15 -542.07 -1.71 -8.49 16 3 C 0.17 2.66 12.74 180.11 2.30 4.95 16 4 N -0.35 -9.30 12.21 -59.99 -0.73 -10.03 16 5 N -0.32 -9.30 12.21 -50.16 -0.61 -9.92 16 6 C 0.16 3.45 7.66 137.98 1.06 4.50 16 7 C 0.15 2.14 6.29 71.23 0.45 2.59 16 8 O -0.39 -8.48 9.86 -129.94 -1.28 -9.76 16 9 C 0.05 0.73 6.42 71.24 0.46 1.19 16 10 C 0.51 12.72 7.90 87.66 0.69 13.41 16 11 O -0.58 -20.38 16.15 16.00 0.26 -20.12 16 12 N -0.71 -15.90 4.34 -439.09 -1.91 -17.81 16 13 C 0.16 4.05 3.12 45.72 0.14 4.19 16 14 H 0.07 2.14 7.57 -2.39 -0.02 2.12 16 15 C -0.12 -2.85 6.59 31.32 0.21 -2.64 16 16 C -0.11 -2.48 6.83 31.72 0.22 -2.27 16 17 C -0.11 -2.93 6.11 31.94 0.20 -2.73 16 18 C -0.10 -2.91 2.86 -9.72 -0.03 -2.93 16 19 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 20 C 0.17 5.83 4.80 86.38 0.41 6.24 16 21 N -0.74 -35.01 5.47 -343.46 -1.88 -36.89 16 22 C -0.24 -12.64 9.99 84.03 0.84 -11.80 16 23 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 24 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 25 N -0.97 -57.52 13.06 21.65 0.28 -57.24 16 26 Si 0.97 44.03 29.55 68.60 2.03 46.05 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 29 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 30 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.13 -0.22 8.14 -2.38 -0.02 -0.24 16 32 H 0.11 0.16 7.19 -2.39 -0.02 0.15 16 33 H 0.26 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 0.69 7.21 -2.39 -0.02 0.67 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.41 7.73 6.51 -92.70 -0.60 7.13 16 39 H 0.07 1.59 7.92 -2.39 -0.02 1.57 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 1.85 8.00 -2.39 -0.02 1.83 16 45 H 0.04 1.12 6.34 -2.38 -0.02 1.11 16 46 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.37 19.09 7.58 -92.71 -0.70 18.39 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -86.00 397.26 2.95 -83.05 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.32 Total: 28.52 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 8.81 Total: 12.62 kcal Atomic # 7 Polarization: -133.82 SS G_CDS: -6.55 Total: -140.37 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.02 Total: -29.88 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -86.00 2.95 -83.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320169580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.558 kcal (2) G-P(sol) polarization free energy of solvation -86.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds