Wall clock time and date at job start Tue Mar 31 2020 20:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46885 * 2 1 4 4 C 1.46498 * 120.00384 * 270.00225 * 3 2 1 5 5 C 1.53000 * 109.47046 * 270.00210 * 4 3 2 6 6 N 1.46903 * 109.47075 * 180.02562 * 5 4 3 7 7 C 1.46896 * 110.99791 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47065 * 179.97438 * 7 6 5 9 9 O 1.21297 * 119.99744 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00415 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00094 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00228 * 359.97438 * 11 10 8 13 13 C 1.38959 * 120.00013 * 179.97438 * 11 10 8 14 14 N 1.31405 * 119.99670 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99980 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47062 * 60.00061 * 15 13 11 17 17 H 1.48502 * 109.46824 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47392 * 299.99706 * 15 13 11 19 19 C 1.34785 * 119.99590 * 90.00148 * 3 2 1 20 20 O 1.21281 * 119.99604 * 179.97438 * 19 3 2 21 21 C 1.50695 * 119.99867 * 0.02562 * 19 3 2 22 22 N 1.46497 * 109.46894 * 179.97438 * 21 19 3 23 23 C 1.35047 * 126.40169 * 265.02593 * 22 21 19 24 24 N 1.30496 * 108.70161 * 180.20738 * 23 22 21 25 25 C 1.34134 * 109.25675 * 359.62603 * 24 23 22 26 26 C 1.34664 * 108.01786 * 0.37372 * 25 24 23 27 27 C 1.50701 * 126.59120 * 179.81255 * 26 25 24 28 28 H 1.08996 * 109.46928 * 299.99545 * 1 2 3 29 29 H 1.08996 * 109.47386 * 59.99363 * 1 2 3 30 30 H 1.09003 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46928 * 240.00455 * 2 1 3 32 32 H 1.08992 * 109.47005 * 120.00321 * 2 1 3 33 33 H 1.09003 * 109.46845 * 30.00237 * 4 3 2 34 34 H 1.08999 * 109.47262 * 150.00166 * 4 3 2 35 35 H 1.09001 * 109.46852 * 299.99509 * 5 4 3 36 36 H 1.08999 * 109.47126 * 59.99873 * 5 4 3 37 37 H 1.00898 * 111.00037 * 56.04263 * 6 5 4 38 38 H 1.09000 * 109.47356 * 299.99956 * 7 6 5 39 39 H 1.08999 * 109.47250 * 60.00126 * 7 6 5 40 40 H 0.96997 * 119.99321 * 359.97438 * 10 8 7 41 41 H 0.97005 * 120.00094 * 180.02562 * 14 13 11 42 42 H 1.09004 * 109.47461 * 60.00146 * 21 19 3 43 43 H 1.08998 * 109.47159 * 299.99810 * 21 19 3 44 44 H 1.08002 * 125.64425 * 359.93649 * 23 22 21 45 45 H 1.08003 * 125.98596 * 180.11348 * 25 24 23 46 46 H 1.08997 * 109.47445 * 269.96014 * 27 26 25 47 47 H 1.09008 * 109.46455 * 29.95840 * 27 26 25 48 48 H 1.08999 * 109.47529 * 149.95028 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7104 6 7 3.9524 2.5247 -2.9822 7 6 5.3333 2.3162 -3.4378 8 6 5.5465 3.0399 -4.7424 9 8 4.6375 3.6679 -5.2431 10 7 6.7470 2.9893 -5.3529 11 6 6.9410 3.6480 -6.5394 12 1 6.1317 4.2072 -6.9852 13 6 8.1789 3.5963 -7.1685 14 7 9.1637 2.9163 -6.6258 15 14 8.4430 4.4933 -8.7855 16 1 8.1996 5.9453 -8.5916 17 1 9.8392 4.2831 -9.2458 18 1 7.5006 3.9650 -9.8043 19 6 2.2429 2.0165 1.1673 20 8 2.6476 3.1599 1.1673 21 6 1.9924 1.3058 2.4723 22 7 2.3101 2.2031 3.5859 23 6 3.4811 2.2656 4.2558 24 7 3.3853 3.1804 5.1814 25 6 2.1650 3.7348 5.1308 26 6 1.4757 3.1353 4.1414 27 6 0.0585 3.4339 3.7251 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 4.3882 2.2157 -0.9507 36 1 3.8744 0.7624 -1.8408 37 1 3.7423 3.5084 -2.9042 38 1 6.0251 2.7036 -2.6898 39 1 5.5119 1.2505 -3.5806 40 1 7.4739 2.4874 -4.9522 41 1 10.0281 2.8805 -7.0647 42 1 2.6230 0.4186 2.5298 43 1 0.9445 1.0112 2.5302 44 1 4.3510 1.6560 4.0607 45 1 1.7980 4.5211 5.7740 46 1 -0.6269 2.8020 4.2898 47 1 -0.1656 4.4819 3.9245 48 1 -0.0571 3.2341 2.6598 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320800251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:29 Heat of formation + Delta-G solvation = -1.426207 kcal Electronic energy + Delta-G solvation = -28564.212293 eV Core-core repulsion = 24462.677986 eV Total energy + Delta-G solvation = -4101.534306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.43685 -40.34291 -38.30782 -36.83713 -35.45339 -34.37031 -33.84148 -32.25053 -31.57024 -31.18872 -29.73068 -27.96933 -26.70031 -25.90295 -24.09490 -23.89045 -22.41079 -21.70797 -20.62855 -19.52673 -19.16459 -18.02498 -17.84682 -17.54672 -16.60483 -16.23551 -15.78007 -15.57477 -15.31701 -14.84683 -14.56813 -14.47107 -14.24884 -14.14650 -13.91561 -13.81908 -13.55718 -13.37481 -13.27689 -13.13327 -13.07512 -12.81209 -12.71820 -12.44911 -12.24900 -12.09351 -11.69477 -11.56327 -11.51092 -11.18374 -10.99586 -10.66257 -10.44539 -10.22010 -10.17620 -9.74224 -9.50734 -9.20706 -8.52221 -8.49260 -8.12734 -7.97144 -6.42177 -3.83092 1.63423 2.03892 2.21571 2.62733 2.98343 3.20016 3.25662 3.30175 3.80256 3.89643 4.04674 4.11684 4.25554 4.37057 4.37879 4.44245 4.48937 4.60718 4.79522 4.82072 4.86014 5.06586 5.11763 5.15052 5.15997 5.19613 5.22325 5.26066 5.39073 5.48069 5.51185 5.61577 5.66098 5.77989 5.79325 5.94687 6.05473 6.06820 6.24944 6.50475 6.78118 6.92189 7.11864 7.54542 7.56370 7.64297 7.84703 8.05181 8.60348 9.16976 9.53201 10.04581 10.75468 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.001870 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.546090 B =14972.780064 C =15783.265586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.118 3.882 5 C 0.047 3.953 6 N -0.666 5.666 7 C 0.053 3.947 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.932 3.068 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.494 3.506 20 O -0.512 6.512 21 C 0.086 3.914 22 N -0.444 5.444 23 C 0.189 3.811 24 N -0.490 5.490 25 C -0.028 4.028 26 C -0.016 4.016 27 C -0.076 4.076 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.203 0.797 45 H 0.168 0.832 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.745 -10.535 21.478 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 N -0.341 5.341 4 C -0.005 4.005 5 C -0.084 4.084 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.199 5.199 11 C -0.430 4.430 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.759 3.241 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.279 3.721 20 O -0.386 6.386 21 C -0.040 4.040 22 N -0.129 5.129 23 C -0.092 4.092 24 N -0.207 5.207 25 C -0.175 4.175 26 C -0.129 4.129 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.171 0.829 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.220 0.780 45 H 0.186 0.814 46 H 0.090 0.910 47 H 0.102 0.898 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.591 -9.885 21.138 29.223 hybrid contribution 0.689 0.219 -0.674 0.988 sum -16.903 -9.666 20.465 28.247 Atomic orbital electron populations 1.22238 0.95347 1.02797 1.02829 1.21716 0.94852 0.81959 1.03972 1.47972 1.65671 1.14580 1.05847 1.21457 0.96834 0.98725 0.83462 1.22242 0.95725 0.99734 0.90726 1.60030 1.23833 1.18395 1.27655 1.21653 0.88961 1.01216 0.96184 1.19774 0.84018 0.86323 0.87310 1.90522 1.42354 1.46630 1.67257 1.41849 1.10622 1.46080 1.21383 1.19659 0.97867 1.27693 0.97755 0.87945 1.25276 0.95167 0.97626 0.99908 1.69604 1.03159 1.41368 1.40170 0.85902 0.77169 0.79732 0.81319 1.19893 1.20972 1.19869 1.20732 0.78644 0.87295 0.85415 1.90830 1.43774 1.17234 1.86753 1.21745 1.05132 0.92951 0.84218 1.44903 1.12888 1.29434 1.25639 1.24894 0.89991 1.01268 0.93085 1.70271 1.19822 1.09291 1.21330 1.22022 0.91035 1.03532 1.00912 1.21206 0.95655 0.96312 0.99753 1.20204 0.89038 1.03084 1.01104 0.92686 0.91573 0.90944 0.89111 0.90406 0.89027 0.89688 0.95207 0.91071 0.82943 0.93813 0.89619 0.77452 0.91801 0.85807 0.86316 0.78042 0.81443 0.91007 0.89795 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.24 37.16 0.38 -0.19 16 2 C 0.10 0.39 5.93 -4.04 -0.02 0.36 16 3 N -0.61 -4.63 2.47 -173.69 -0.43 -5.05 16 4 C 0.12 1.20 5.67 -4.04 -0.02 1.18 16 5 C 0.05 0.57 6.01 -3.82 -0.02 0.54 16 6 N -0.67 -10.77 6.13 -115.06 -0.70 -11.48 16 7 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 8 C 0.44 10.54 7.82 -10.99 -0.09 10.46 16 9 O -0.58 -16.01 15.78 5.54 0.09 -15.92 16 10 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 11 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 12 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 15 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 C 0.49 4.61 7.74 -10.98 -0.09 4.53 16 20 O -0.51 -7.45 16.01 5.56 0.09 -7.36 16 21 C 0.09 0.50 4.83 -5.20 -0.03 0.48 16 22 N -0.44 -4.08 2.24 -115.28 -0.26 -4.34 16 23 C 0.19 1.97 12.56 -90.37 -1.13 0.83 16 24 N -0.49 -6.32 11.25 -14.66 -0.16 -6.49 16 25 C -0.03 -0.32 11.79 -17.81 -0.21 -0.53 16 26 C -0.02 -0.15 6.95 -81.60 -0.57 -0.72 16 27 C -0.08 -0.51 10.08 36.01 0.36 -0.14 16 28 H 0.05 0.17 7.22 -51.93 -0.38 -0.21 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.08 0.13 6.44 -51.93 -0.33 -0.21 16 33 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.08 1.04 7.42 -51.93 -0.39 0.66 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.35 6.05 8.43 -39.29 -0.33 5.72 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.12 0.35 7.39 -51.93 -0.38 -0.04 16 43 H 0.12 0.40 7.07 -51.93 -0.37 0.04 16 44 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.17 1.51 8.06 -52.48 -0.42 1.08 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 48 H 0.06 0.43 7.96 -51.93 -0.41 0.01 16 LS Contribution 406.74 15.07 6.13 6.13 Total: -1.00 -37.55 406.74 -8.80 -46.35 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -7.49 Total: 10.84 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -1.71 Total: 9.61 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -0.89 Total: -65.83 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.18 Total: -23.28 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.55 -8.80 -46.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320800251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.924 kcal (2) G-P(sol) polarization free energy of solvation -37.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds