Wall clock time and date at job start Tue Mar 31 2020 20:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46885 * 2 1 4 4 C 1.46498 * 120.00384 * 270.00225 * 3 2 1 5 5 C 1.53000 * 109.47046 * 270.00210 * 4 3 2 6 6 N 1.46903 * 109.47075 * 180.02562 * 5 4 3 7 7 C 1.46896 * 110.99791 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47065 * 179.97438 * 7 6 5 9 9 O 1.21297 * 119.99744 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00415 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00094 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00228 * 359.97438 * 11 10 8 13 13 C 1.38959 * 120.00013 * 179.97438 * 11 10 8 14 14 N 1.31405 * 119.99670 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99980 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47062 * 60.00061 * 15 13 11 17 17 H 1.48502 * 109.46824 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47392 * 299.99706 * 15 13 11 19 19 C 1.34785 * 119.99590 * 90.00148 * 3 2 1 20 20 O 1.21281 * 119.99604 * 179.97438 * 19 3 2 21 21 C 1.50695 * 119.99867 * 0.02562 * 19 3 2 22 22 N 1.46497 * 109.46894 * 179.97438 * 21 19 3 23 23 C 1.35047 * 126.40169 * 265.02593 * 22 21 19 24 24 N 1.30496 * 108.70161 * 180.20738 * 23 22 21 25 25 C 1.34134 * 109.25675 * 359.62603 * 24 23 22 26 26 C 1.34664 * 108.01786 * 0.37372 * 25 24 23 27 27 C 1.50701 * 126.59120 * 179.81255 * 26 25 24 28 28 H 1.08996 * 109.46928 * 299.99545 * 1 2 3 29 29 H 1.08996 * 109.47386 * 59.99363 * 1 2 3 30 30 H 1.09003 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46928 * 240.00455 * 2 1 3 32 32 H 1.08992 * 109.47005 * 120.00321 * 2 1 3 33 33 H 1.09003 * 109.46845 * 30.00237 * 4 3 2 34 34 H 1.08999 * 109.47262 * 150.00166 * 4 3 2 35 35 H 1.09001 * 109.46852 * 299.99509 * 5 4 3 36 36 H 1.08999 * 109.47126 * 59.99873 * 5 4 3 37 37 H 1.00898 * 111.00037 * 56.04263 * 6 5 4 38 38 H 1.09000 * 109.47356 * 299.99956 * 7 6 5 39 39 H 1.08999 * 109.47250 * 60.00126 * 7 6 5 40 40 H 0.96997 * 119.99321 * 359.97438 * 10 8 7 41 41 H 0.97005 * 120.00094 * 180.02562 * 14 13 11 42 42 H 1.09004 * 109.47461 * 60.00146 * 21 19 3 43 43 H 1.08998 * 109.47159 * 299.99810 * 21 19 3 44 44 H 1.08002 * 125.64425 * 359.93649 * 23 22 21 45 45 H 1.08003 * 125.98596 * 180.11348 * 25 24 23 46 46 H 1.08997 * 109.47445 * 269.96014 * 27 26 25 47 47 H 1.09008 * 109.46455 * 29.95840 * 27 26 25 48 48 H 1.08999 * 109.47529 * 149.95028 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7104 6 7 3.9524 2.5247 -2.9822 7 6 5.3333 2.3162 -3.4378 8 6 5.5465 3.0399 -4.7424 9 8 4.6375 3.6679 -5.2431 10 7 6.7470 2.9893 -5.3529 11 6 6.9410 3.6480 -6.5394 12 1 6.1317 4.2072 -6.9852 13 6 8.1789 3.5963 -7.1685 14 7 9.1637 2.9163 -6.6258 15 14 8.4430 4.4933 -8.7855 16 1 8.1996 5.9453 -8.5916 17 1 9.8392 4.2831 -9.2458 18 1 7.5006 3.9650 -9.8043 19 6 2.2429 2.0165 1.1673 20 8 2.6476 3.1599 1.1673 21 6 1.9924 1.3058 2.4723 22 7 2.3101 2.2031 3.5859 23 6 3.4811 2.2656 4.2558 24 7 3.3853 3.1804 5.1814 25 6 2.1650 3.7348 5.1308 26 6 1.4757 3.1353 4.1414 27 6 0.0585 3.4339 3.7251 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 4.3882 2.2157 -0.9507 36 1 3.8744 0.7624 -1.8408 37 1 3.7423 3.5084 -2.9042 38 1 6.0251 2.7036 -2.6898 39 1 5.5119 1.2505 -3.5806 40 1 7.4739 2.4874 -4.9522 41 1 10.0281 2.8805 -7.0647 42 1 2.6230 0.4186 2.5298 43 1 0.9445 1.0112 2.5302 44 1 4.3510 1.6560 4.0607 45 1 1.7980 4.5211 5.7740 46 1 -0.6269 2.8020 4.2898 47 1 -0.1656 4.4819 3.9245 48 1 -0.0571 3.2341 2.6598 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320800251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:28 Heat of formation + Delta-G solvation = -28.431851 kcal Electronic energy + Delta-G solvation = -28565.383345 eV Core-core repulsion = 24462.677986 eV Total energy + Delta-G solvation = -4102.705359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.13075 -41.06003 -40.17928 -37.72370 -36.58470 -35.85031 -35.05505 -33.31613 -32.87470 -32.17923 -30.51427 -28.93567 -27.37854 -27.33814 -25.60856 -24.36456 -23.43819 -22.43844 -21.41574 -21.07506 -20.08393 -19.88496 -18.60118 -18.19925 -17.90406 -17.18592 -17.11283 -16.56121 -16.45750 -16.11045 -15.82015 -15.52450 -15.36529 -14.98060 -14.87369 -14.82155 -14.63047 -14.35423 -13.98415 -13.97757 -13.69463 -13.62682 -13.51741 -13.39251 -13.28623 -13.23537 -12.95747 -12.75875 -12.68344 -12.45518 -12.13580 -12.11652 -11.98636 -11.52779 -11.42617 -10.95523 -10.47446 -10.42201 -10.04958 -9.85687 -9.47789 -9.24557 -8.48874 -5.98049 0.93617 1.37600 1.38540 1.40633 1.51747 1.61812 1.99302 2.01206 2.20164 2.28223 2.92811 3.17816 3.29261 3.51354 3.68886 3.77398 3.86048 3.94866 3.96938 4.06459 4.14829 4.23576 4.26051 4.36944 4.44008 4.44943 4.50327 4.54055 4.59821 4.71260 4.74780 4.82221 4.84945 4.95353 4.98932 5.00687 5.38254 5.38456 5.40324 5.42579 5.79413 5.80460 6.02667 6.14068 6.22226 6.31279 6.56645 6.97342 7.09362 7.10390 7.52189 8.07265 8.68229 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.001870 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.546090 B =14972.780064 C =15783.265586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 N -0.598 5.598 4 C 0.125 3.875 5 C 0.056 3.944 6 N -0.676 5.676 7 C 0.067 3.933 8 C 0.436 3.564 9 O -0.623 6.623 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.919 5.919 15 Si 0.995 3.005 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.270 1.270 19 C 0.492 3.508 20 O -0.574 6.574 21 C 0.088 3.912 22 N -0.445 5.445 23 C 0.180 3.820 24 N -0.534 5.534 25 C -0.062 4.062 26 C -0.017 4.017 27 C -0.073 4.073 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.092 0.908 37 H 0.341 0.659 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.163 0.837 43 H 0.151 0.849 44 H 0.228 0.772 45 H 0.176 0.824 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.477 -13.018 21.796 31.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.030 4.030 3 N -0.330 5.330 4 C 0.001 3.999 5 C -0.074 4.074 6 N -0.308 5.308 7 C -0.066 4.066 8 C 0.224 3.776 9 O -0.510 6.510 10 N -0.209 5.209 11 C -0.466 4.466 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.195 1.195 19 C 0.279 3.721 20 O -0.453 6.453 21 C -0.037 4.037 22 N -0.129 5.129 23 C -0.103 4.103 24 N -0.252 5.252 25 C -0.208 4.208 26 C -0.131 4.131 27 C -0.130 4.130 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.111 0.889 37 H 0.159 0.841 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.181 0.819 43 H 0.168 0.832 44 H 0.245 0.755 45 H 0.193 0.807 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.340 -12.442 21.470 30.856 hybrid contribution 0.865 0.950 -0.764 1.495 sum -17.475 -11.492 20.706 29.431 Atomic orbital electron populations 1.22221 0.94708 1.03795 1.02251 1.22069 0.95352 0.79678 1.05922 1.48033 1.64746 1.15841 1.04425 1.21213 0.95822 0.97741 0.85095 1.22268 0.96600 1.00158 0.88418 1.60062 1.22601 1.18071 1.30047 1.21519 0.90448 1.01622 0.92964 1.20823 0.82775 0.85381 0.88650 1.90490 1.43440 1.48216 1.68815 1.41921 1.11450 1.46333 1.21171 1.19643 0.98095 1.29350 0.99474 0.90264 1.26078 0.94418 0.97951 1.02901 1.69664 1.03473 1.41586 1.41287 0.84966 0.77669 0.78356 0.77210 1.19807 1.19404 1.19523 1.21369 0.77350 0.86634 0.86753 1.90814 1.46775 1.20038 1.87647 1.22091 1.07938 0.92701 0.80959 1.45068 1.12310 1.29531 1.25950 1.25420 0.91100 1.01018 0.92716 1.70199 1.20961 1.10813 1.23209 1.22349 0.91281 1.04707 1.02468 1.21670 0.96770 0.95723 0.98963 1.20283 0.87687 1.03861 1.01207 0.92155 0.93351 0.89108 0.88630 0.87064 0.87959 0.92386 0.96473 0.88941 0.84062 0.92353 0.87123 0.76944 0.91221 0.81920 0.83153 0.75542 0.80724 0.88469 0.89572 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.24 71.98 0.74 0.19 16 2 C 0.09 0.36 5.93 86.38 0.51 0.88 16 3 N -0.60 -7.79 2.47 -821.81 -2.03 -9.82 16 4 C 0.12 2.44 5.67 86.38 0.49 2.93 16 5 C 0.06 1.28 6.01 86.30 0.52 1.80 16 6 N -0.68 -21.52 6.13 -517.94 -3.17 -24.69 16 7 C 0.07 2.34 6.17 85.56 0.53 2.87 16 8 C 0.44 21.14 7.82 87.66 0.69 21.82 16 9 O -0.62 -35.09 15.78 -3.08 -0.05 -35.13 16 10 N -0.57 -29.78 5.29 -306.98 -1.62 -31.40 16 11 C -0.34 -19.32 9.68 84.04 0.81 -18.50 16 12 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 13 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 14 N -0.92 -49.93 13.05 21.67 0.28 -49.64 16 15 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 19 C 0.49 8.32 7.74 87.65 0.68 9.00 16 20 O -0.57 -16.81 16.01 -3.03 -0.05 -16.86 16 21 C 0.09 0.74 4.83 85.63 0.41 1.15 16 22 N -0.45 -7.43 2.24 -518.62 -1.16 -8.59 16 23 C 0.18 3.59 12.56 180.26 2.26 5.85 16 24 N -0.53 -14.02 11.25 -200.31 -2.25 -16.27 16 25 C -0.06 -1.43 11.79 83.52 0.98 -0.44 16 26 C -0.02 -0.31 6.95 40.95 0.28 -0.03 16 27 C -0.07 -0.85 10.08 71.24 0.72 -0.14 16 28 H 0.06 0.14 7.22 -2.39 -0.02 0.12 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.10 0.37 8.07 -2.39 -0.02 0.35 16 32 H 0.11 -0.24 6.44 -2.39 -0.02 -0.26 16 33 H 0.10 1.77 8.07 -2.39 -0.02 1.75 16 34 H 0.06 1.47 7.42 -2.39 -0.02 1.45 16 35 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.34 12.03 8.43 -89.70 -0.76 11.27 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 41 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 42 H 0.16 0.09 7.39 -2.38 -0.02 0.07 16 43 H 0.15 0.33 7.07 -2.39 -0.02 0.31 16 44 H 0.23 2.88 8.06 -2.91 -0.02 2.85 16 45 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 46 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.06 0.73 7.96 -2.39 -0.02 0.71 16 Total: -1.00 -85.57 406.74 1.56 -84.01 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.50 Total: 36.04 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 10.09 Total: 27.11 kcal Atomic # 7 Polarization: -130.46 SS G_CDS: -9.96 Total: -140.42 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -0.10 Total: -52.00 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -85.57 1.56 -84.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320800251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.582 kcal (2) G-P(sol) polarization free energy of solvation -85.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds