Wall clock time and date at job start Tue Mar 31 2020 20:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34950 * 126.03830 * 2 1 4 4 C 1.35322 * 107.74432 * 179.74896 * 3 2 1 5 5 C 1.50692 * 126.03896 * 180.27296 * 4 3 2 6 6 H 1.08999 * 109.47468 * 25.16386 * 5 4 3 7 7 O 1.42898 * 109.47261 * 145.16354 * 5 4 3 8 8 C 1.53001 * 109.47413 * 265.16479 * 5 4 3 9 9 N 1.46495 * 109.47462 * 180.02562 * 8 5 4 10 10 C 1.34780 * 119.99927 * 179.97438 * 9 8 5 11 11 O 1.21581 * 120.00109 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99826 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00005 * 180.02562 * 12 10 9 14 14 C 1.53042 * 109.45806 * 275.02366 * 13 12 10 15 15 C 1.53191 * 109.31174 * 178.59989 * 14 13 12 16 16 N 1.46921 * 108.76584 * 54.65625 * 15 14 13 17 17 C 1.36941 * 120.63004 * 126.40302 * 16 15 14 18 18 H 1.07997 * 119.99878 * 332.60937 * 17 16 15 19 19 C 1.38814 * 119.99869 * 152.60846 * 17 16 15 20 20 N 1.31617 * 119.99853 * 159.34234 * 19 17 16 21 21 Si 1.86800 * 120.00082 * 339.34752 * 19 17 16 22 22 H 1.48495 * 109.47271 * 92.93925 * 21 19 17 23 23 H 1.48502 * 109.47060 * 212.94289 * 21 19 17 24 24 H 1.48499 * 109.47041 * 332.94081 * 21 19 17 25 25 C 1.46929 * 118.74065 * 306.38579 * 16 15 14 26 26 C 1.53039 * 109.46311 * 154.97061 * 13 12 10 27 27 C 1.39871 * 107.92046 * 0.39302 * 4 3 2 28 28 N 1.30840 * 108.20191 * 359.60165 * 27 4 3 29 29 H 1.09000 * 109.47338 * 269.98073 * 1 2 3 30 30 H 1.09010 * 109.46941 * 29.97779 * 1 2 3 31 31 H 1.08996 * 109.47280 * 149.97384 * 1 2 3 32 32 H 1.08000 * 126.12439 * 359.97438 * 3 2 1 33 33 H 0.96701 * 114.00270 * 60.00094 * 7 5 4 34 34 H 1.09003 * 109.47205 * 300.00328 * 8 5 4 35 35 H 1.09000 * 109.46968 * 59.99661 * 8 5 4 36 36 H 0.96995 * 120.00348 * 359.97438 * 9 8 5 37 37 H 0.97001 * 120.00000 * 359.97438 * 12 10 9 38 38 H 1.08994 * 109.45964 * 34.99653 * 13 12 10 39 39 H 1.08997 * 109.49681 * 298.56774 * 14 13 12 40 40 H 1.09000 * 109.49620 * 58.65833 * 14 13 12 41 41 H 1.08996 * 109.59720 * 294.86413 * 15 14 13 42 42 H 1.09003 * 109.70021 * 174.50799 * 15 14 13 43 43 H 0.97001 * 119.99642 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.57963 * 293.82311 * 25 16 15 45 45 H 1.08994 * 109.70214 * 173.46684 * 25 16 15 46 46 H 1.09001 * 109.49641 * 301.34064 * 26 13 12 47 47 H 1.09006 * 109.49560 * 61.39690 * 26 13 12 48 48 H 1.07995 * 125.89772 * 179.86474 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6665 0.0056 5 6 4.7680 1.5451 0.0135 6 1 4.5187 2.5118 0.4511 7 8 5.7959 0.9230 0.7871 8 6 5.2605 1.7466 -1.4210 9 7 6.4510 2.6002 -1.4133 10 6 7.0620 2.9150 -2.5726 11 8 6.6255 2.4900 -3.6248 12 7 8.1576 3.7000 -2.5655 13 6 8.8215 4.0426 -3.8257 14 6 9.8006 2.9292 -4.2052 15 6 10.4671 3.2742 -5.5407 16 7 11.0795 4.6054 -5.4334 17 6 12.4003 4.7927 -5.7429 18 1 13.1004 3.9771 -5.6381 19 6 12.8392 6.0309 -6.1913 20 7 14.1134 6.3487 -6.1040 21 14 11.6213 7.2463 -6.9187 22 1 11.1303 8.1541 -5.8511 23 1 12.2904 8.0438 -7.9778 24 1 10.4749 6.5070 -7.5056 25 6 10.2479 5.7318 -4.9881 26 6 9.5836 5.3592 -3.6591 27 6 3.5347 -0.7322 0.0001 28 7 2.2891 -1.1328 0.0001 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.9281 2.1193 -0.0004 33 1 6.0685 0.0568 0.4548 34 1 5.5098 0.7799 -1.8586 35 1 4.4764 2.2211 -2.0110 36 1 6.7995 2.9390 -0.5739 37 1 8.5061 4.0387 -1.7260 38 1 8.0743 4.1525 -4.6116 39 1 10.5627 2.8356 -3.4315 40 1 9.2609 1.9871 -4.3007 41 1 9.7181 3.2793 -6.3325 42 1 11.2355 2.5357 -5.7695 43 1 14.4201 7.2138 -6.4177 44 1 9.4810 5.9373 -5.7349 45 1 10.8702 6.6160 -4.8505 46 1 8.8895 6.1467 -3.3658 47 1 10.3474 5.2426 -2.8901 48 1 4.4054 -1.3711 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322144665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:36 Heat of formation + Delta-G solvation = 28.473918 kcal Electronic energy + Delta-G solvation = -28755.999088 eV Core-core repulsion = 24655.761348 eV Total energy + Delta-G solvation = -4100.237740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.76467 -40.03650 -38.16141 -37.43889 -34.57322 -34.24091 -33.67757 -32.16080 -31.47824 -30.39281 -30.03654 -28.51351 -26.81350 -24.86977 -23.41011 -22.82896 -21.82111 -21.61164 -20.97433 -20.52260 -19.61667 -18.31522 -18.02725 -16.94917 -16.45524 -16.03341 -15.91469 -15.90390 -15.17338 -14.98785 -14.80361 -14.50333 -14.31457 -14.10262 -13.82690 -13.73269 -13.41392 -13.26863 -13.19487 -13.03155 -12.86884 -12.52407 -12.30233 -11.97680 -11.93664 -11.73488 -11.14011 -10.93900 -10.78415 -10.65402 -10.50284 -10.23710 -10.17848 -9.98574 -9.92551 -9.72570 -9.44227 -9.20332 -8.93550 -8.62142 -8.60255 -6.95952 -5.92740 -3.28131 1.37167 2.01308 2.21641 2.78812 3.33030 3.34134 3.50863 3.54661 3.93385 4.01748 4.29804 4.35400 4.47816 4.55132 4.59383 4.65154 4.72773 4.82202 4.87069 4.99504 5.19276 5.22158 5.32785 5.38027 5.45903 5.52544 5.73222 5.74336 5.87818 6.08917 6.09046 6.17589 6.21205 6.37365 6.38691 6.46016 6.47820 6.61395 6.69822 6.70113 6.82992 6.92752 7.09295 7.14718 7.22506 7.98849 8.12336 8.35434 8.72771 8.96644 9.74469 10.12506 11.23284 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032741 B = 0.001826 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.002601 B =15331.253143 C =15527.933076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.374 5.374 3 C 0.072 3.928 4 C -0.272 4.272 5 C 0.180 3.820 6 H 0.108 0.892 7 O -0.552 6.552 8 C 0.115 3.885 9 N -0.747 5.747 10 C 0.702 3.298 11 O -0.593 6.593 12 N -0.739 5.739 13 C 0.169 3.831 14 C -0.141 4.141 15 C 0.151 3.849 16 N -0.606 5.606 17 C -0.258 4.258 18 H 0.086 0.914 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.881 3.119 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.130 3.870 26 C -0.140 4.140 27 C 0.062 3.938 28 N -0.294 5.294 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.378 0.622 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.398 0.602 37 H 0.393 0.607 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.065 0.935 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.483 -9.841 16.886 32.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.156 5.156 3 C -0.075 4.075 4 C -0.284 4.284 5 C 0.119 3.881 6 H 0.126 0.874 7 O -0.357 6.357 8 C -0.011 4.011 9 N -0.404 5.404 10 C 0.402 3.598 11 O -0.471 6.471 12 N -0.393 5.393 13 C 0.065 3.935 14 C -0.181 4.181 15 C 0.024 3.976 16 N -0.330 5.330 17 C -0.386 4.386 18 H 0.103 0.897 19 C -0.177 4.177 20 N -0.552 5.552 21 Si 0.712 3.288 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.003 3.997 26 C -0.180 4.180 27 C -0.124 4.124 28 N -0.115 5.115 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.194 0.806 33 H 0.225 0.775 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.233 0.767 37 H 0.226 0.774 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -27.772 -10.603 16.180 33.845 hybrid contribution 0.152 1.322 0.045 1.332 sum -27.620 -9.281 16.224 33.350 Atomic orbital electron populations 1.21911 0.73915 1.04779 1.03551 1.48537 1.06851 1.03793 1.56420 1.22329 0.90591 0.93665 1.00929 1.20568 0.94930 0.94615 1.18295 1.20209 0.83251 0.94674 0.89941 0.87398 1.86589 1.55879 1.37631 1.55602 1.21839 0.87310 0.95230 0.96678 1.44996 1.31567 1.55764 1.08073 1.15992 0.80340 0.79542 0.83938 1.90921 1.67545 1.58466 1.30188 1.45453 1.29307 1.53797 1.10712 1.20838 0.93693 0.94606 0.84374 1.22391 0.98026 0.97583 1.00148 1.20903 0.95747 0.87769 0.93176 1.44404 1.08469 1.03369 1.76745 1.18938 0.82221 0.98846 1.38616 0.89651 1.25285 0.95476 0.97633 0.99261 1.69840 1.14348 1.22111 1.48898 0.86970 0.81620 0.81139 0.79087 1.21660 1.23156 1.19482 1.21295 0.93914 0.92351 0.92105 1.22350 0.99045 0.95369 1.01237 1.23667 0.95423 0.94185 0.99174 1.77409 1.01595 1.08175 1.24320 0.90564 0.89244 0.89114 0.80607 0.77452 0.91372 0.90986 0.76738 0.77413 0.90034 0.91945 0.92252 0.95716 0.91637 0.92814 0.95508 0.90556 0.92316 0.91171 0.79961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.31 11.47 59.85 0.69 1.00 16 2 N -0.37 -2.66 4.01 -68.16 -0.27 -2.93 16 3 C 0.07 0.44 11.40 -17.22 -0.20 0.25 16 4 C -0.27 -1.90 5.15 -105.05 -0.54 -2.44 16 5 C 0.18 1.15 3.51 -27.89 -0.10 1.05 16 6 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 7 O -0.55 -3.78 12.97 -35.23 -0.46 -4.24 16 8 C 0.11 0.99 5.32 -4.04 -0.02 0.97 16 9 N -0.75 -7.32 5.45 -65.23 -0.36 -7.68 16 10 C 0.70 9.93 8.53 -86.91 -0.74 9.19 16 11 O -0.59 -10.97 16.01 5.29 0.08 -10.89 16 12 N -0.74 -9.83 5.08 -58.64 -0.30 -10.12 16 13 C 0.17 2.79 2.42 -67.89 -0.16 2.62 16 14 C -0.14 -2.48 5.65 -26.61 -0.15 -2.64 16 15 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 16 N -0.61 -14.45 2.77 -172.33 -0.48 -14.93 16 17 C -0.26 -7.22 10.04 -15.06 -0.15 -7.37 16 18 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 19 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 20 N -0.91 -27.83 13.97 55.49 0.78 -27.06 16 21 Si 0.88 22.39 24.35 -169.99 -4.14 18.25 16 22 H -0.29 -7.01 6.62 56.52 0.37 -6.63 16 23 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 24 H -0.27 -6.79 6.63 56.52 0.37 -6.42 16 25 C 0.13 2.80 4.20 -3.71 -0.02 2.79 16 26 C -0.14 -2.39 5.55 -26.61 -0.15 -2.53 16 27 C 0.06 0.48 11.40 -17.36 -0.20 0.28 16 28 N -0.29 -2.78 12.58 30.62 0.39 -2.39 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.08 8.14 -51.92 -0.42 -0.34 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.38 1.66 8.24 45.56 0.38 2.03 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.40 3.05 8.36 -40.82 -0.34 2.70 16 37 H 0.39 4.13 8.62 -40.82 -0.35 3.78 16 38 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 44 H 0.03 0.58 7.08 -51.93 -0.37 0.22 16 45 H 0.08 1.79 4.50 -51.93 -0.23 1.56 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.18 0.93 7.64 -52.49 -0.40 0.53 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -37.44 387.85 -7.57 -45.02 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.81 Total: 4.36 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.85 Total: 6.78 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -0.24 Total: -65.12 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.37 Total: -15.13 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.44 -7.57 -45.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322144665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.490 kcal (2) G-P(sol) polarization free energy of solvation -37.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds