Wall clock time and date at job start Tue Mar 31 2020 20:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34950 * 126.03830 * 2 1 4 4 C 1.35322 * 107.74432 * 179.74896 * 3 2 1 5 5 C 1.50692 * 126.03896 * 180.27296 * 4 3 2 6 6 H 1.08999 * 109.47468 * 25.16386 * 5 4 3 7 7 O 1.42898 * 109.47261 * 145.16354 * 5 4 3 8 8 C 1.53001 * 109.47413 * 265.16479 * 5 4 3 9 9 N 1.46495 * 109.47462 * 180.02562 * 8 5 4 10 10 C 1.34780 * 119.99927 * 179.97438 * 9 8 5 11 11 O 1.21581 * 120.00109 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99826 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00005 * 180.02562 * 12 10 9 14 14 C 1.53042 * 109.45806 * 275.02366 * 13 12 10 15 15 C 1.53191 * 109.31174 * 178.59989 * 14 13 12 16 16 N 1.46921 * 108.76584 * 54.65625 * 15 14 13 17 17 C 1.36941 * 120.63004 * 126.40302 * 16 15 14 18 18 H 1.07997 * 119.99878 * 332.60937 * 17 16 15 19 19 C 1.38814 * 119.99869 * 152.60846 * 17 16 15 20 20 N 1.31617 * 119.99853 * 159.34234 * 19 17 16 21 21 Si 1.86800 * 120.00082 * 339.34752 * 19 17 16 22 22 H 1.48495 * 109.47271 * 92.93925 * 21 19 17 23 23 H 1.48502 * 109.47060 * 212.94289 * 21 19 17 24 24 H 1.48499 * 109.47041 * 332.94081 * 21 19 17 25 25 C 1.46929 * 118.74065 * 306.38579 * 16 15 14 26 26 C 1.53039 * 109.46311 * 154.97061 * 13 12 10 27 27 C 1.39871 * 107.92046 * 0.39302 * 4 3 2 28 28 N 1.30840 * 108.20191 * 359.60165 * 27 4 3 29 29 H 1.09000 * 109.47338 * 269.98073 * 1 2 3 30 30 H 1.09010 * 109.46941 * 29.97779 * 1 2 3 31 31 H 1.08996 * 109.47280 * 149.97384 * 1 2 3 32 32 H 1.08000 * 126.12439 * 359.97438 * 3 2 1 33 33 H 0.96701 * 114.00270 * 60.00094 * 7 5 4 34 34 H 1.09003 * 109.47205 * 300.00328 * 8 5 4 35 35 H 1.09000 * 109.46968 * 59.99661 * 8 5 4 36 36 H 0.96995 * 120.00348 * 359.97438 * 9 8 5 37 37 H 0.97001 * 120.00000 * 359.97438 * 12 10 9 38 38 H 1.08994 * 109.45964 * 34.99653 * 13 12 10 39 39 H 1.08997 * 109.49681 * 298.56774 * 14 13 12 40 40 H 1.09000 * 109.49620 * 58.65833 * 14 13 12 41 41 H 1.08996 * 109.59720 * 294.86413 * 15 14 13 42 42 H 1.09003 * 109.70021 * 174.50799 * 15 14 13 43 43 H 0.97001 * 119.99642 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.57963 * 293.82311 * 25 16 15 45 45 H 1.08994 * 109.70214 * 173.46684 * 25 16 15 46 46 H 1.09001 * 109.49641 * 301.34064 * 26 13 12 47 47 H 1.09006 * 109.49560 * 61.39690 * 26 13 12 48 48 H 1.07995 * 125.89772 * 179.86474 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6665 0.0056 5 6 4.7680 1.5451 0.0135 6 1 4.5187 2.5118 0.4511 7 8 5.7959 0.9230 0.7871 8 6 5.2605 1.7466 -1.4210 9 7 6.4510 2.6002 -1.4133 10 6 7.0620 2.9150 -2.5726 11 8 6.6255 2.4900 -3.6248 12 7 8.1576 3.7000 -2.5655 13 6 8.8215 4.0426 -3.8257 14 6 9.8006 2.9292 -4.2052 15 6 10.4671 3.2742 -5.5407 16 7 11.0795 4.6054 -5.4334 17 6 12.4003 4.7927 -5.7429 18 1 13.1004 3.9771 -5.6381 19 6 12.8392 6.0309 -6.1913 20 7 14.1134 6.3487 -6.1040 21 14 11.6213 7.2463 -6.9187 22 1 11.1303 8.1541 -5.8511 23 1 12.2904 8.0438 -7.9778 24 1 10.4749 6.5070 -7.5056 25 6 10.2479 5.7318 -4.9881 26 6 9.5836 5.3592 -3.6591 27 6 3.5347 -0.7322 0.0001 28 7 2.2891 -1.1328 0.0001 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.9281 2.1193 -0.0004 33 1 6.0685 0.0568 0.4548 34 1 5.5098 0.7799 -1.8586 35 1 4.4764 2.2211 -2.0110 36 1 6.7995 2.9390 -0.5739 37 1 8.5061 4.0387 -1.7260 38 1 8.0743 4.1525 -4.6116 39 1 10.5627 2.8356 -3.4315 40 1 9.2609 1.9871 -4.3007 41 1 9.7181 3.2793 -6.3325 42 1 11.2355 2.5357 -5.7695 43 1 14.4201 7.2138 -6.4177 44 1 9.4810 5.9373 -5.7349 45 1 10.8702 6.6160 -4.8505 46 1 8.8895 6.1467 -3.3658 47 1 10.3474 5.2426 -2.8901 48 1 4.4054 -1.3711 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322144665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:34 Heat of formation + Delta-G solvation = -2.975427 kcal Electronic energy + Delta-G solvation = -28757.362834 eV Core-core repulsion = 24655.761348 eV Total energy + Delta-G solvation = -4101.601486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.24222 -41.15993 -39.39473 -38.34523 -36.02898 -35.21270 -34.08782 -33.98431 -32.24315 -31.94840 -31.49678 -29.14890 -27.41069 -26.53300 -24.57334 -24.06248 -23.32371 -22.11240 -21.85809 -21.25011 -21.14813 -19.45581 -18.72049 -18.49089 -17.60786 -17.07856 -16.78604 -16.54288 -16.31817 -15.94702 -15.78012 -15.65971 -15.33716 -15.27107 -15.16593 -14.85233 -14.54862 -14.46760 -14.23572 -13.80739 -13.76478 -13.59597 -13.47371 -13.41369 -13.17060 -12.57010 -12.51589 -12.47179 -12.25397 -12.00003 -11.75443 -11.65022 -11.53781 -11.39021 -11.29943 -11.10562 -10.69109 -10.42153 -10.27625 -9.69516 -9.41710 -8.94617 -8.14325 -5.46502 0.91521 1.31177 1.44634 1.53426 1.59045 1.68013 1.89070 2.23480 2.43449 3.07794 3.26763 3.39022 3.50619 3.70105 3.81883 3.93474 3.98841 4.02761 4.22738 4.26963 4.29502 4.34808 4.35334 4.43378 4.51387 4.65933 4.66378 4.70091 4.71166 4.79884 4.87350 4.92579 4.95716 5.06860 5.10272 5.19650 5.22819 5.43310 5.53669 5.61762 5.62692 5.88678 6.08312 6.10376 6.14931 6.67391 6.80447 6.92623 7.19463 7.63291 7.67377 8.03986 9.05445 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032741 B = 0.001826 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.002601 B =15331.253143 C =15527.933076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.381 5.381 3 C 0.075 3.925 4 C -0.287 4.287 5 C 0.198 3.802 6 H 0.123 0.877 7 O -0.561 6.561 8 C 0.118 3.882 9 N -0.727 5.727 10 C 0.700 3.300 11 O -0.638 6.638 12 N -0.727 5.727 13 C 0.180 3.820 14 C -0.127 4.127 15 C 0.147 3.853 16 N -0.618 5.618 17 C -0.249 4.249 18 H 0.052 0.948 19 C -0.033 4.033 20 N -0.956 5.956 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.312 1.312 24 H -0.266 1.266 25 C 0.121 3.879 26 C -0.126 4.126 27 C 0.051 3.949 28 N -0.339 5.339 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.210 0.790 33 H 0.387 0.613 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.410 0.590 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.028 0.972 42 H 0.057 0.943 43 H 0.262 0.738 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.130 -8.826 18.645 35.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.163 5.163 3 C -0.073 4.073 4 C -0.299 4.299 5 C 0.138 3.862 6 H 0.141 0.859 7 O -0.368 6.368 8 C -0.007 4.007 9 N -0.384 5.384 10 C 0.399 3.601 11 O -0.520 6.520 12 N -0.382 5.382 13 C 0.074 3.926 14 C -0.168 4.168 15 C 0.021 3.979 16 N -0.343 5.343 17 C -0.378 4.378 18 H 0.070 0.930 19 C -0.228 4.228 20 N -0.602 5.602 21 Si 0.773 3.227 22 H -0.194 1.194 23 H -0.241 1.241 24 H -0.191 1.191 25 C -0.004 4.004 26 C -0.166 4.166 27 C -0.134 4.134 28 N -0.161 5.161 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.227 0.773 33 H 0.237 0.763 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.250 0.750 37 H 0.246 0.754 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.091 0.909 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -30.472 -9.610 18.024 36.684 hybrid contribution 0.932 0.885 -0.469 1.368 sum -29.540 -8.725 17.554 35.453 Atomic orbital electron populations 1.22204 0.72124 1.05923 1.04642 1.48869 1.08030 1.03490 1.55860 1.22921 0.90326 0.94840 0.99201 1.20690 0.95597 0.94305 1.19326 1.20050 0.82773 0.95183 0.88244 0.85894 1.86566 1.55993 1.38428 1.55820 1.21903 0.86435 0.94120 0.98270 1.44827 1.31237 1.54919 1.07376 1.16141 0.80341 0.79286 0.84296 1.90900 1.68766 1.60139 1.32168 1.45086 1.29002 1.53723 1.10377 1.20487 0.92923 0.93793 0.85399 1.22207 0.98059 0.98249 0.98259 1.21008 0.95608 0.86168 0.95090 1.44502 1.07395 1.05175 1.77233 1.18864 0.83742 0.97764 1.37447 0.93004 1.25883 0.97008 0.99791 1.00128 1.69963 1.16408 1.22935 1.50862 0.85945 0.79259 0.79143 0.78312 1.19391 1.24068 1.19065 1.21374 0.93474 0.90984 0.94596 1.22154 0.99461 0.96509 0.98455 1.24041 0.95582 0.95134 0.98659 1.77338 1.02585 1.10038 1.26156 0.89479 0.86629 0.89502 0.77327 0.76342 0.92681 0.91686 0.75046 0.75381 0.91589 0.91951 0.91966 0.95398 0.92401 0.92938 0.95073 0.92318 0.89179 0.90854 0.78570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.47 127.77 1.47 1.89 16 2 N -0.38 -4.87 4.01 -369.55 -1.48 -6.35 16 3 C 0.07 0.74 11.40 83.54 0.95 1.70 16 4 C -0.29 -3.49 5.15 -20.14 -0.10 -3.59 16 5 C 0.20 2.03 3.51 29.85 0.10 2.13 16 6 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 7 O -0.56 -6.35 12.97 -148.98 -1.93 -8.28 16 8 C 0.12 1.80 5.32 86.38 0.46 2.25 16 9 N -0.73 -12.29 5.45 -478.54 -2.61 -14.90 16 10 C 0.70 18.15 8.53 179.05 1.53 19.68 16 11 O -0.64 -22.75 16.01 -3.97 -0.06 -22.81 16 12 N -0.73 -17.16 5.08 -457.69 -2.33 -19.49 16 13 C 0.18 5.48 2.42 45.02 0.11 5.59 16 14 C -0.13 -4.30 5.65 30.67 0.17 -4.13 16 15 C 0.15 5.95 6.52 86.36 0.56 6.51 16 16 N -0.62 -29.19 2.77 -699.12 -1.94 -31.13 16 17 C -0.25 -14.15 10.04 84.03 0.84 -13.30 16 18 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 19 C -0.03 -1.94 5.23 84.86 0.44 -1.50 16 20 N -0.96 -59.86 13.97 21.65 0.30 -59.56 16 21 Si 0.94 46.35 24.35 68.60 1.67 48.02 16 22 H -0.27 -12.11 6.62 99.48 0.66 -11.45 16 23 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16 24 H -0.27 -12.72 6.63 99.48 0.66 -12.06 16 25 C 0.12 5.00 4.20 86.36 0.36 5.36 16 26 C -0.13 -3.92 5.55 30.67 0.17 -3.75 16 27 C 0.05 0.76 11.40 85.24 0.97 1.73 16 28 N -0.34 -6.28 12.58 -57.02 -0.72 -7.00 16 29 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.12 -0.10 8.14 -2.38 -0.02 -0.12 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.21 0.44 8.06 -2.91 -0.02 0.41 16 33 H 0.39 2.69 8.24 -74.06 -0.61 2.08 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.41 4.85 8.36 -92.71 -0.78 4.07 16 37 H 0.41 7.04 8.62 -92.71 -0.80 6.24 16 38 H 0.07 2.29 7.58 -2.39 -0.02 2.27 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 43 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.03 1.27 7.08 -2.39 -0.02 1.26 16 45 H 0.06 2.64 4.50 -2.39 -0.01 2.63 16 46 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 48 H 0.20 1.91 7.64 -2.91 -0.02 1.89 16 Total: -1.00 -82.52 387.85 -2.33 -84.85 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -1.28 Total: 16.07 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 8.04 Total: 20.58 kcal Atomic # 7 Polarization: -129.66 SS G_CDS: -8.77 Total: -138.42 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -2.00 Total: -31.09 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.67 Total: 48.02 kcal Total: -82.52 -2.33 -84.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322144665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.870 kcal (2) G-P(sol) polarization free energy of solvation -82.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds