Wall clock time and date at job start Tue Mar 31 2020 21:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00231 * 2 1 4 4 C 1.53010 * 109.46591 * 269.99768 * 3 2 1 5 5 C 1.53001 * 109.46908 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47149 * 179.97438 * 5 4 3 7 7 C 1.46897 * 111.00122 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47245 * 180.02562 * 7 6 5 9 9 O 1.21288 * 119.99783 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99968 * 179.97438 * 8 7 6 11 11 C 1.37102 * 119.99655 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99736 * 0.02562 * 11 10 8 13 13 C 1.38947 * 119.99651 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99960 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00057 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47317 * 89.99097 * 15 13 11 17 17 H 1.48499 * 109.47348 * 210.00041 * 15 13 11 18 18 H 1.48510 * 109.46716 * 329.99552 * 15 13 11 19 19 C 1.34781 * 119.99957 * 179.97438 * 2 1 3 20 20 O 1.21283 * 119.99929 * 180.02562 * 19 2 1 21 21 C 1.50700 * 119.99662 * 0.02562 * 19 2 1 22 22 C 1.50703 * 109.46568 * 179.97438 * 21 19 2 23 23 C 1.34669 * 126.59045 * 84.96050 * 22 21 19 24 24 N 1.34128 * 108.01780 * 180.02562 * 23 22 21 25 25 C 1.30495 * 109.25774 * 359.72199 * 24 23 22 26 26 N 1.35045 * 108.69990 * 0.44365 * 25 24 23 27 27 C 1.46499 * 126.39849 * 179.82112 * 26 25 24 28 28 H 1.09008 * 109.47202 * 270.00828 * 1 2 3 29 29 H 1.09007 * 109.46800 * 30.00158 * 1 2 3 30 30 H 1.08995 * 109.47340 * 150.00194 * 1 2 3 31 31 H 1.09000 * 109.47543 * 29.99168 * 3 2 1 32 32 H 1.08996 * 109.47546 * 149.99911 * 3 2 1 33 33 H 1.08994 * 109.47313 * 299.99743 * 4 3 2 34 34 H 1.09004 * 109.47030 * 60.00161 * 4 3 2 35 35 H 1.09000 * 109.47269 * 300.00531 * 5 4 3 36 36 H 1.09004 * 109.46914 * 60.00371 * 5 4 3 37 37 H 1.00897 * 110.99294 * 56.04854 * 6 5 4 38 38 H 1.09007 * 109.46994 * 300.00288 * 7 6 5 39 39 H 1.09001 * 109.47481 * 59.99858 * 7 6 5 40 40 H 0.96995 * 119.99788 * 0.02562 * 10 8 7 41 41 H 0.96999 * 119.99652 * 179.97438 * 14 13 11 42 42 H 1.08996 * 109.47401 * 60.00184 * 21 19 2 43 43 H 1.09006 * 109.46986 * 299.99503 * 21 19 2 44 44 H 1.08000 * 125.99191 * 0.02748 * 23 22 21 45 45 H 1.07997 * 125.65170 * 180.29145 * 25 24 23 46 46 H 1.09002 * 109.47391 * 269.69091 * 27 26 25 47 47 H 1.09001 * 109.46813 * 149.69147 * 27 26 25 48 48 H 1.09004 * 109.47041 * 29.69274 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7102 -1.4426 5 6 3.2170 3.0356 -1.4427 6 7 3.4624 3.4592 -2.8278 7 6 4.1967 4.7309 -2.8671 8 6 4.4289 5.1328 -4.3008 9 8 4.0230 4.4289 -5.2013 10 7 5.0875 6.2745 -4.5824 11 6 5.2992 6.6399 -5.8868 12 1 4.9377 6.0130 -6.6885 13 6 5.9786 7.8166 -6.1771 14 7 6.4179 8.5795 -5.2014 15 14 6.2664 8.3148 -7.9543 16 1 5.1302 9.1468 -8.4253 17 1 7.5257 9.0958 -8.0517 18 1 6.3722 7.0977 -8.7986 19 6 2.1389 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0010 21 6 1.3853 -2.4723 0.0005 22 6 2.3646 -3.6177 0.0005 23 6 2.9585 -4.1661 1.0776 24 7 3.7566 -5.1565 0.6520 25 6 3.6754 -5.2465 -0.6473 26 7 2.8218 -4.3003 -1.0943 27 6 2.4500 -4.0543 -2.4898 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0285 0.5137 32 1 3.1499 1.1384 0.5138 33 1 3.0416 0.9506 -1.9564 34 1 1.5001 1.8406 -1.9565 35 1 2.6277 3.7951 -0.9290 36 1 4.1695 2.9056 -0.9288 37 1 2.5982 3.5242 -3.3444 38 1 3.6143 5.5025 -2.3635 39 1 5.1557 4.6125 -2.3627 40 1 5.4124 6.8372 -3.8622 41 1 6.8926 9.4008 -5.4041 42 1 0.7590 -2.5302 -0.8897 43 1 0.7583 -2.5298 0.8904 44 1 2.8169 -3.8619 2.1041 45 1 4.2051 -5.9580 -1.2633 46 1 3.1356 -3.3278 -2.9259 47 1 1.4328 -3.6646 -2.5314 48 1 2.5047 -4.9876 -3.0503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322791964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:35 Heat of formation + Delta-G solvation = -4.992974 kcal Electronic energy + Delta-G solvation = -27958.528368 eV Core-core repulsion = 23856.839395 eV Total energy + Delta-G solvation = -4101.688973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37754 -40.11159 -38.30658 -36.63145 -35.45239 -34.34860 -33.89246 -32.91602 -31.57270 -31.14345 -28.04051 -27.50794 -27.27318 -26.43382 -24.74926 -23.32623 -21.71606 -21.65251 -20.64576 -19.34912 -19.18934 -17.88124 -17.59245 -17.37419 -16.56379 -16.09755 -16.02073 -15.75157 -15.61412 -14.83807 -14.65333 -14.36863 -14.25692 -14.11928 -13.79635 -13.66415 -13.48999 -13.39213 -13.28172 -13.20465 -13.01063 -12.89279 -12.60395 -12.46080 -12.03039 -11.87212 -11.70641 -11.48348 -11.37680 -11.05116 -10.78516 -10.39544 -10.22497 -10.21573 -10.15495 -9.80530 -9.51071 -9.03081 -8.60143 -8.45941 -8.05055 -7.95668 -6.41620 -3.82494 1.68502 2.29778 2.46396 2.67050 2.99925 3.17591 3.26174 3.32368 3.91119 4.09670 4.12226 4.24634 4.31739 4.34164 4.44425 4.51031 4.67396 4.68669 4.80508 4.89849 4.90826 5.04543 5.06022 5.11872 5.14520 5.21730 5.24187 5.25184 5.37541 5.46841 5.48059 5.66026 5.79298 5.98545 6.01961 6.04115 6.06099 6.25189 6.29346 6.47118 6.89897 7.00067 7.23013 7.55185 7.67101 7.83454 7.86505 8.06500 8.61528 9.17873 9.54499 10.06038 10.76142 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.001656 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.103444 B =16901.081138 C =17692.998557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.618 5.618 3 C 0.117 3.883 4 C -0.130 4.130 5 C 0.063 3.937 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.510 3.490 20 O -0.519 6.519 21 C -0.062 4.062 22 C -0.012 4.012 23 C -0.008 4.008 24 N -0.494 5.494 25 C 0.184 3.816 26 N -0.454 5.454 27 C 0.069 3.931 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.347 0.653 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.166 0.834 45 H 0.205 0.795 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.451 -21.352 13.576 29.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.352 5.352 3 C -0.006 4.006 4 C -0.169 4.169 5 C -0.067 4.067 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.297 3.703 20 O -0.393 6.393 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.157 4.157 24 N -0.212 5.212 25 C -0.098 4.098 26 N -0.137 5.137 27 C -0.074 4.074 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.167 0.833 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.226 0.774 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.134 0.866 44 H 0.183 0.817 45 H 0.222 0.778 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.937 -22.495 13.230 29.585 hybrid contribution -0.867 1.985 -0.797 2.308 sum -14.804 -20.510 12.433 28.185 Atomic orbital electron populations 1.21852 0.79392 1.03516 1.02044 1.47861 1.07005 1.06110 1.74265 1.21469 0.97870 0.83896 0.97345 1.21875 1.00590 0.98029 0.96394 1.21859 0.99606 0.94911 0.90366 1.60026 1.27332 1.31047 1.11766 1.21671 0.99416 0.90294 0.96795 1.19821 0.84387 0.83404 0.89764 1.90514 1.55115 1.53606 1.47607 1.41867 1.49581 1.19819 1.08788 1.19706 1.33642 1.05565 0.83998 0.87935 1.25270 0.96884 0.96064 0.99782 1.69615 1.38522 1.14243 1.31926 0.85847 0.77665 0.78700 0.82010 1.20441 1.20904 1.19413 1.20528 0.88205 0.84959 0.76591 1.90779 1.13694 1.86980 1.47869 1.20049 0.96130 0.88719 1.05372 1.20387 1.05123 0.99720 0.87467 1.21962 0.98507 0.96746 0.98440 1.70269 1.21611 1.20178 1.09153 1.24911 0.96839 0.96013 0.91996 1.45216 1.34500 1.26721 1.07226 1.22078 1.02344 1.03779 0.79149 0.92238 0.90601 0.91095 0.90460 0.89562 0.90609 0.92014 0.95546 0.90916 0.83344 0.93901 0.89563 0.77438 0.91874 0.88371 0.86641 0.81675 0.77844 0.90048 0.89898 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 10.24 59.85 0.61 0.90 16 2 N -0.62 -4.79 2.87 -181.56 -0.52 -5.31 16 3 C 0.12 1.04 5.41 -4.04 -0.02 1.02 16 4 C -0.13 -1.40 5.80 -26.73 -0.15 -1.56 16 5 C 0.06 0.78 5.69 -3.82 -0.02 0.76 16 6 N -0.67 -11.16 6.13 -115.05 -0.70 -11.86 16 7 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 8 C 0.44 10.64 7.82 -10.99 -0.09 10.55 16 9 O -0.58 -16.17 15.78 5.55 0.09 -16.08 16 10 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 11 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 12 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 15 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.51 5.01 7.67 -10.98 -0.08 4.92 16 20 O -0.52 -7.67 15.61 5.55 0.09 -7.58 16 21 C -0.06 -0.40 4.59 -29.03 -0.13 -0.53 16 22 C -0.01 -0.12 5.45 -81.60 -0.44 -0.56 16 23 C -0.01 -0.09 11.79 -17.81 -0.21 -0.30 16 24 N -0.49 -6.18 11.25 -14.67 -0.17 -6.34 16 25 C 0.18 1.77 12.56 -90.38 -1.14 0.64 16 26 N -0.45 -3.97 3.15 -121.36 -0.38 -4.35 16 27 C 0.07 0.36 11.00 59.85 0.66 1.01 16 28 H 0.06 0.16 8.14 -51.92 -0.42 -0.27 16 29 H 0.08 0.26 8.07 -51.93 -0.42 -0.15 16 30 H 0.07 0.15 6.44 -51.93 -0.33 -0.18 16 31 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.09 0.92 7.42 -51.93 -0.39 0.54 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.35 5.84 8.43 -39.29 -0.33 5.51 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.10 0.41 6.35 -51.93 -0.33 0.08 16 43 H 0.12 0.45 8.11 -51.93 -0.42 0.03 16 44 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.21 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.29 7.12 -51.93 -0.37 -0.07 16 48 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 406.14 15.07 6.12 6.12 Total: -1.00 -38.54 406.14 -8.62 -47.16 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -7.49 Total: 11.05 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -1.29 Total: 9.63 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -1.11 Total: -66.46 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.17 Total: -23.67 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.54 -8.62 -47.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322791964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.164 kcal (2) G-P(sol) polarization free energy of solvation -38.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds