Wall clock time and date at job start Tue Mar 31 2020 21:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00231 * 2 1 4 4 C 1.53010 * 109.46591 * 269.99768 * 3 2 1 5 5 C 1.53001 * 109.46908 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47149 * 179.97438 * 5 4 3 7 7 C 1.46897 * 111.00122 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47245 * 180.02562 * 7 6 5 9 9 O 1.21288 * 119.99783 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99968 * 179.97438 * 8 7 6 11 11 C 1.37102 * 119.99655 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99736 * 0.02562 * 11 10 8 13 13 C 1.38947 * 119.99651 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99960 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00057 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47317 * 89.99097 * 15 13 11 17 17 H 1.48499 * 109.47348 * 210.00041 * 15 13 11 18 18 H 1.48510 * 109.46716 * 329.99552 * 15 13 11 19 19 C 1.34781 * 119.99957 * 179.97438 * 2 1 3 20 20 O 1.21283 * 119.99929 * 180.02562 * 19 2 1 21 21 C 1.50700 * 119.99662 * 0.02562 * 19 2 1 22 22 C 1.50703 * 109.46568 * 179.97438 * 21 19 2 23 23 C 1.34669 * 126.59045 * 84.96050 * 22 21 19 24 24 N 1.34128 * 108.01780 * 180.02562 * 23 22 21 25 25 C 1.30495 * 109.25774 * 359.72199 * 24 23 22 26 26 N 1.35045 * 108.69990 * 0.44365 * 25 24 23 27 27 C 1.46499 * 126.39849 * 179.82112 * 26 25 24 28 28 H 1.09008 * 109.47202 * 270.00828 * 1 2 3 29 29 H 1.09007 * 109.46800 * 30.00158 * 1 2 3 30 30 H 1.08995 * 109.47340 * 150.00194 * 1 2 3 31 31 H 1.09000 * 109.47543 * 29.99168 * 3 2 1 32 32 H 1.08996 * 109.47546 * 149.99911 * 3 2 1 33 33 H 1.08994 * 109.47313 * 299.99743 * 4 3 2 34 34 H 1.09004 * 109.47030 * 60.00161 * 4 3 2 35 35 H 1.09000 * 109.47269 * 300.00531 * 5 4 3 36 36 H 1.09004 * 109.46914 * 60.00371 * 5 4 3 37 37 H 1.00897 * 110.99294 * 56.04854 * 6 5 4 38 38 H 1.09007 * 109.46994 * 300.00288 * 7 6 5 39 39 H 1.09001 * 109.47481 * 59.99858 * 7 6 5 40 40 H 0.96995 * 119.99788 * 0.02562 * 10 8 7 41 41 H 0.96999 * 119.99652 * 179.97438 * 14 13 11 42 42 H 1.08996 * 109.47401 * 60.00184 * 21 19 2 43 43 H 1.09006 * 109.46986 * 299.99503 * 21 19 2 44 44 H 1.08000 * 125.99191 * 0.02748 * 23 22 21 45 45 H 1.07997 * 125.65170 * 180.29145 * 25 24 23 46 46 H 1.09002 * 109.47391 * 269.69091 * 27 26 25 47 47 H 1.09001 * 109.46813 * 149.69147 * 27 26 25 48 48 H 1.09004 * 109.47041 * 29.69274 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7102 -1.4426 5 6 3.2170 3.0356 -1.4427 6 7 3.4624 3.4592 -2.8278 7 6 4.1967 4.7309 -2.8671 8 6 4.4289 5.1328 -4.3008 9 8 4.0230 4.4289 -5.2013 10 7 5.0875 6.2745 -4.5824 11 6 5.2992 6.6399 -5.8868 12 1 4.9377 6.0130 -6.6885 13 6 5.9786 7.8166 -6.1771 14 7 6.4179 8.5795 -5.2014 15 14 6.2664 8.3148 -7.9543 16 1 5.1302 9.1468 -8.4253 17 1 7.5257 9.0958 -8.0517 18 1 6.3722 7.0977 -8.7986 19 6 2.1389 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0010 21 6 1.3853 -2.4723 0.0005 22 6 2.3646 -3.6177 0.0005 23 6 2.9585 -4.1661 1.0776 24 7 3.7566 -5.1565 0.6520 25 6 3.6754 -5.2465 -0.6473 26 7 2.8218 -4.3003 -1.0943 27 6 2.4500 -4.0543 -2.4898 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0285 0.5137 32 1 3.1499 1.1384 0.5138 33 1 3.0416 0.9506 -1.9564 34 1 1.5001 1.8406 -1.9565 35 1 2.6277 3.7951 -0.9290 36 1 4.1695 2.9056 -0.9288 37 1 2.5982 3.5242 -3.3444 38 1 3.6143 5.5025 -2.3635 39 1 5.1557 4.6125 -2.3627 40 1 5.4124 6.8372 -3.8622 41 1 6.8926 9.4008 -5.4041 42 1 0.7590 -2.5302 -0.8897 43 1 0.7583 -2.5298 0.8904 44 1 2.8169 -3.8619 2.1041 45 1 4.2051 -5.9580 -1.2633 46 1 3.1356 -3.3278 -2.9259 47 1 1.4328 -3.6646 -2.5314 48 1 2.5047 -4.9876 -3.0503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322791964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:33 Heat of formation + Delta-G solvation = -33.620504 kcal Electronic energy + Delta-G solvation = -27959.769751 eV Core-core repulsion = 23856.839395 eV Total energy + Delta-G solvation = -4102.930356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.05364 -40.83020 -40.17911 -37.66536 -36.48880 -35.86603 -34.98478 -33.70069 -33.28217 -32.37609 -29.09187 -28.13365 -27.79765 -27.49981 -26.22315 -24.58597 -22.62470 -22.41447 -21.36406 -21.05344 -19.97820 -19.90191 -18.23455 -18.01896 -17.88751 -17.19983 -16.91724 -16.73624 -16.51959 -16.36132 -15.97536 -15.62772 -15.39706 -15.13003 -14.97579 -14.68478 -14.45117 -14.18436 -14.05688 -13.90165 -13.77532 -13.56505 -13.38974 -13.34447 -13.19432 -13.11684 -12.93950 -12.76907 -12.66299 -12.46029 -12.42622 -12.13235 -11.69085 -11.52601 -10.98729 -10.93836 -10.49236 -10.38887 -10.04064 -9.66595 -9.34586 -9.31277 -8.48498 -5.97700 1.00588 1.36913 1.40770 1.53833 1.60949 1.89816 2.02113 2.05890 2.26029 2.29058 2.92597 3.18472 3.50438 3.53912 3.72463 3.88763 3.95957 3.99923 4.03552 4.14875 4.24920 4.29882 4.33916 4.40468 4.45005 4.45761 4.52060 4.55544 4.56972 4.63085 4.68717 4.73012 4.79978 4.84094 5.01924 5.15230 5.19793 5.38928 5.38990 5.56695 5.77945 5.87049 6.08519 6.27978 6.39558 6.41094 6.57724 7.10100 7.11632 7.18967 7.53346 8.08489 8.68850 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.001656 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.103444 B =16901.081138 C =17692.998557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.614 5.614 3 C 0.121 3.879 4 C -0.117 4.117 5 C 0.065 3.935 6 N -0.689 5.689 7 C 0.065 3.935 8 C 0.436 3.564 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.269 1.269 17 H -0.271 1.271 18 H -0.274 1.274 19 C 0.505 3.495 20 O -0.581 6.581 21 C -0.054 4.054 22 C -0.013 4.013 23 C -0.042 4.042 24 N -0.539 5.539 25 C 0.176 3.824 26 N -0.456 5.456 27 C 0.063 3.937 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.345 0.655 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.129 0.871 43 H 0.146 0.854 44 H 0.169 0.831 45 H 0.234 0.766 46 H 0.067 0.933 47 H 0.103 0.897 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.612 -20.941 13.617 30.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.346 5.346 3 C -0.003 4.003 4 C -0.156 4.156 5 C -0.064 4.064 6 N -0.322 5.322 7 C -0.067 4.067 8 C 0.224 3.776 9 O -0.511 6.511 10 N -0.209 5.209 11 C -0.465 4.465 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.194 1.194 17 H -0.195 1.195 18 H -0.199 1.199 19 C 0.294 3.706 20 O -0.460 6.460 21 C -0.094 4.094 22 C -0.129 4.129 23 C -0.190 4.190 24 N -0.257 5.257 25 C -0.106 4.106 26 N -0.138 5.138 27 C -0.078 4.078 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.164 0.836 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.186 0.814 45 H 0.250 0.750 46 H 0.086 0.914 47 H 0.122 0.878 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.150 -22.062 13.299 30.404 hybrid contribution -0.226 1.848 -0.791 2.023 sum -16.376 -20.214 12.508 28.866 Atomic orbital electron populations 1.22182 0.76485 1.05077 1.03779 1.47969 1.08734 1.05071 1.72856 1.21373 0.97783 0.85292 0.95846 1.21734 1.00227 0.96096 0.97531 1.21917 1.00138 0.96240 0.88114 1.60011 1.27463 1.30279 1.14448 1.21526 1.00907 0.91852 0.92422 1.20888 0.82545 0.82146 0.92051 1.90479 1.56341 1.54571 1.49736 1.41938 1.50208 1.20615 1.08188 1.19680 1.35646 1.06479 0.84735 0.90316 1.26075 0.95890 0.95415 1.03963 1.69675 1.38298 1.14467 1.33601 0.84902 0.78190 0.78173 0.76906 1.19394 1.19528 1.19874 1.21111 0.87656 0.86402 0.75453 1.90758 1.16437 1.87891 1.50937 1.20170 0.95435 0.85540 1.08249 1.20810 1.04951 0.99890 0.87235 1.22235 0.99650 0.97639 0.99505 1.70194 1.23027 1.21563 1.10959 1.25509 0.96847 0.96580 0.91707 1.45474 1.33888 1.26114 1.08364 1.22335 1.03015 1.05021 0.77413 0.90370 0.89798 0.88911 0.87428 0.91991 0.94113 0.90691 0.92813 0.91471 0.83589 0.91075 0.88288 0.76929 0.91245 0.85312 0.83605 0.81358 0.75009 0.91429 0.87834 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 10.24 127.77 1.31 1.56 16 2 N -0.61 -8.25 2.87 -846.73 -2.43 -10.68 16 3 C 0.12 1.95 5.41 86.38 0.47 2.42 16 4 C -0.12 -2.39 5.80 30.60 0.18 -2.22 16 5 C 0.07 1.52 5.69 86.30 0.49 2.01 16 6 N -0.69 -22.39 6.13 -517.92 -3.17 -25.56 16 7 C 0.07 2.30 6.17 85.56 0.53 2.82 16 8 C 0.44 21.23 7.82 87.66 0.69 21.91 16 9 O -0.62 -35.34 15.78 -3.06 -0.05 -35.39 16 10 N -0.57 -29.87 5.29 -306.99 -1.62 -31.49 16 11 C -0.34 -19.32 9.68 84.04 0.81 -18.51 16 12 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 14 N -0.92 -49.93 13.05 21.66 0.28 -49.65 16 15 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 C 0.51 9.45 7.67 87.66 0.67 10.12 16 20 O -0.58 -17.79 15.61 -3.04 -0.05 -17.84 16 21 C -0.05 -0.58 4.59 29.10 0.13 -0.44 16 22 C -0.01 -0.24 5.45 40.95 0.22 -0.02 16 23 C -0.04 -0.99 11.79 83.52 0.98 -0.01 16 24 N -0.54 -14.01 11.25 -200.32 -2.25 -16.26 16 25 C 0.18 3.39 12.56 180.26 2.26 5.65 16 26 N -0.46 -7.66 3.15 -537.88 -1.70 -9.36 16 27 C 0.06 0.55 11.00 127.77 1.41 1.96 16 28 H 0.08 0.07 8.14 -2.38 -0.02 0.05 16 29 H 0.08 0.24 8.07 -2.38 -0.02 0.22 16 30 H 0.09 -0.03 6.44 -2.39 -0.02 -0.04 16 31 H 0.11 1.10 8.07 -2.39 -0.02 1.08 16 32 H 0.06 1.33 7.42 -2.39 -0.02 1.32 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.35 11.36 8.43 -89.70 -0.76 10.60 16 38 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.40 19.60 7.90 -92.71 -0.73 18.86 16 41 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.13 0.58 6.35 -2.39 -0.02 0.56 16 43 H 0.15 0.67 8.11 -2.38 -0.02 0.65 16 44 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 45 H 0.23 2.57 8.06 -2.91 -0.02 2.54 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.10 0.45 7.12 -2.39 -0.02 0.43 16 48 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 Total: -1.00 -88.07 406.14 1.16 -86.92 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.50 Total: 37.15 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 10.62 Total: 26.99 kcal Atomic # 7 Polarization: -132.10 SS G_CDS: -10.89 Total: -143.00 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.10 Total: -53.23 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -88.07 1.16 -86.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322791964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.297 kcal (2) G-P(sol) polarization free energy of solvation -88.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds