Wall clock time and date at job start Tue Mar 31 2020 21:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46891 * 111.00283 * 2 1 4 4 C 1.53005 * 109.47190 * 66.04527 * 3 2 1 5 5 C 1.53001 * 109.47315 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47147 * 179.97438 * 5 4 3 7 7 C 1.46506 * 119.99936 * 89.99619 * 6 5 4 8 8 C 1.34773 * 120.00036 * 270.27655 * 6 5 4 9 9 O 1.21283 * 120.00092 * 359.71995 * 8 6 5 10 10 C 1.50702 * 120.00430 * 179.72648 * 8 6 5 11 11 C 1.50698 * 109.47465 * 179.97438 * 10 8 6 12 12 N 1.30496 * 125.64540 * 304.68986 * 11 10 8 13 13 C 1.34128 * 109.25144 * 179.89364 * 12 11 10 14 14 C 1.34661 * 108.02349 * 0.36868 * 13 12 11 15 15 N 1.35039 * 125.64830 * 124.99756 * 11 10 8 16 16 H 0.96994 * 126.40368 * 359.97438 * 15 11 10 17 17 C 1.46903 * 111.00327 * 236.04386 * 2 1 3 18 18 C 1.50704 * 109.46890 * 293.95957 * 17 2 1 19 19 O 1.21285 * 120.00188 * 359.97438 * 18 17 2 20 20 N 1.34778 * 119.99538 * 179.97438 * 18 17 2 21 21 C 1.37099 * 119.99903 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99897 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00129 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99633 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99942 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47062 * 89.99953 * 25 23 21 27 27 H 1.48496 * 109.46669 * 209.99723 * 25 23 21 28 28 H 1.48491 * 109.46991 * 329.99575 * 25 23 21 29 29 H 1.09005 * 109.47107 * 59.99746 * 1 2 3 30 30 H 1.09001 * 109.47648 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47137 * 300.00049 * 1 2 3 32 32 H 1.08996 * 109.47547 * 306.04874 * 3 2 1 33 33 H 1.09003 * 109.47511 * 186.04109 * 3 2 1 34 34 H 1.09003 * 109.47218 * 59.99856 * 4 3 2 35 35 H 1.08997 * 109.46936 * 300.00406 * 4 3 2 36 36 H 1.08994 * 109.47531 * 59.99665 * 5 4 3 37 37 H 1.09005 * 109.46544 * 299.99600 * 5 4 3 38 38 H 1.08999 * 109.46892 * 90.00398 * 7 6 5 39 39 H 1.09000 * 109.46803 * 209.99571 * 7 6 5 40 40 H 1.09000 * 109.47214 * 330.00364 * 7 6 5 41 41 H 1.09009 * 109.46564 * 299.99895 * 10 8 6 42 42 H 1.09001 * 109.47030 * 59.99569 * 10 8 6 43 43 H 1.08007 * 125.98847 * 180.11771 * 13 12 11 44 44 H 1.08001 * 126.59755 * 179.81358 * 14 13 12 45 45 H 1.09002 * 109.46866 * 53.95685 * 17 2 1 46 46 H 1.08997 * 109.47606 * 173.95976 * 17 2 1 47 47 H 0.97006 * 120.00405 * 359.97438 * 20 18 17 48 48 H 0.97001 * 119.99278 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1792 3.4860 1.3181 6 7 1.8302 4.1430 2.5801 7 6 2.7381 4.0565 3.7266 8 6 0.6712 4.8224 2.6881 9 8 -0.0804 4.8940 1.7389 10 6 0.3092 5.4931 3.9881 11 6 -1.0249 6.1791 3.8451 12 7 -1.3311 7.0649 2.9371 13 6 -2.6021 7.4562 3.1119 14 6 -3.0999 6.7936 4.1733 15 7 -2.0997 5.9832 4.6388 16 1 -2.1531 5.3809 5.3973 17 6 1.9955 -0.7660 -1.1375 18 6 1.6368 -2.2205 -0.9728 19 8 1.0052 -2.5833 -0.0030 20 7 2.0180 -3.1180 -1.9032 21 6 1.6922 -4.4412 -1.7531 22 1 1.1298 -4.7643 -0.8896 23 6 2.0856 -5.3667 -2.7120 24 7 2.7695 -4.9735 -3.7630 25 14 1.6411 -7.1695 -2.5079 26 1 0.3289 -7.4318 -3.1517 27 1 2.6835 -8.0118 -3.1476 28 1 1.5577 -7.4981 -1.0622 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.5611 1.9273 -0.8308 33 1 3.0797 1.3443 -0.1082 34 1 2.0657 1.5015 2.1493 35 1 0.5472 2.0844 1.4265 36 1 1.7447 4.0417 0.4872 37 1 3.2636 3.4592 1.2097 38 1 3.4401 4.8898 3.6978 39 1 2.1615 4.0990 4.6506 40 1 3.2882 3.1164 3.6843 41 1 0.2507 4.7451 4.7789 42 1 1.0712 6.2304 4.2411 43 1 -3.1320 8.1794 2.5096 44 1 -4.0967 6.8837 4.5789 45 1 1.5612 -0.3873 -2.0628 46 1 3.0797 -0.6612 -1.1755 47 1 2.5228 -2.8278 -2.6790 48 1 3.0437 -5.6195 -4.4326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327277565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:35 Heat of formation + Delta-G solvation = 2.408692 kcal Electronic energy + Delta-G solvation = -28241.038682 eV Core-core repulsion = 24139.670669 eV Total energy + Delta-G solvation = -4101.368013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.33993 -40.02705 -38.59841 -36.85325 -35.75968 -33.86949 -32.97605 -32.72603 -31.57186 -31.18199 -28.18461 -27.70322 -27.31699 -25.91069 -24.68685 -22.99010 -21.86796 -21.15333 -20.68842 -19.52902 -19.07909 -18.21045 -17.79911 -17.40216 -16.46171 -16.10844 -15.84443 -15.41342 -15.21504 -14.75388 -14.63934 -14.47179 -14.20647 -14.13691 -13.70717 -13.65700 -13.53524 -13.28198 -13.22413 -13.17715 -12.71026 -12.61757 -12.12227 -11.93341 -11.90766 -11.54950 -11.42275 -11.19683 -11.12723 -10.87836 -10.50844 -10.37167 -10.29922 -10.20715 -10.19106 -10.01205 -9.44721 -8.92316 -8.71023 -8.39273 -7.94038 -7.78420 -6.38803 -3.79391 1.69200 2.40925 2.50961 2.85794 3.02546 3.19549 3.27857 3.33852 3.92477 3.94831 4.05923 4.27445 4.31159 4.43336 4.72332 4.82743 4.86656 4.89033 4.99767 5.11216 5.13663 5.19477 5.26938 5.29173 5.30969 5.37927 5.38046 5.61420 5.69340 5.76772 5.79370 5.82843 6.01608 6.05840 6.08611 6.20104 6.32421 6.35448 6.46447 6.64976 6.96837 7.10946 7.35854 7.47567 7.58007 7.84735 7.96773 8.09931 8.65650 9.21391 9.58274 10.10547 10.79057 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.001683 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.160029 B =16628.208875 C =17147.705263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.057 3.943 4 C -0.129 4.129 5 C 0.118 3.882 6 N -0.618 5.618 7 C 0.075 3.925 8 C 0.516 3.484 9 O -0.508 6.508 10 C -0.053 4.053 11 C 0.215 3.785 12 N -0.461 5.461 13 C -0.027 4.027 14 C -0.055 4.055 15 N -0.566 5.566 16 H 0.418 0.582 17 C 0.045 3.955 18 C 0.445 3.555 19 O -0.578 6.578 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.013 0.987 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.170 0.830 44 H 0.177 0.823 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 24.398 17.283 29.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.071 4.071 4 C -0.168 4.168 5 C -0.005 4.005 6 N -0.353 5.353 7 C -0.068 4.068 8 C 0.302 3.698 9 O -0.382 6.382 10 C -0.094 4.094 11 C -0.049 4.049 12 N -0.180 5.180 13 C -0.175 4.175 14 C -0.189 4.189 15 N -0.170 5.170 16 H 0.255 0.745 17 C -0.086 4.086 18 C 0.231 3.769 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.032 0.968 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.187 0.813 44 H 0.195 0.805 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.243 24.176 17.035 29.660 hybrid contribution -0.725 -0.959 -0.157 1.212 sum -2.968 23.218 16.878 28.857 Atomic orbital electron populations 1.22544 0.86868 1.04149 0.98995 1.61563 1.08690 1.11414 1.42589 1.22034 0.99981 0.88903 0.96225 1.21912 1.02073 0.94273 0.98513 1.21468 1.00161 0.93067 0.85785 1.47806 1.20427 1.53138 1.13913 1.21859 0.93952 1.02908 0.88124 1.20107 0.81220 0.78851 0.89647 1.90795 1.49108 1.58951 1.39309 1.19964 0.91961 0.99801 0.97710 1.22332 0.90634 1.00013 0.91935 1.70240 1.14737 1.11916 1.21088 1.22397 0.92271 1.03987 0.98860 1.22755 0.95200 0.99549 1.01384 1.43216 1.11503 1.35040 1.27239 0.74488 1.21866 1.00606 0.94112 0.92008 1.19762 0.85322 0.86687 0.85177 1.90475 1.43876 1.80174 1.31666 1.41874 1.49562 1.07352 1.21459 1.19695 1.32853 0.82315 1.07890 0.87956 1.25257 0.96876 1.00536 0.95347 1.69617 1.38166 1.35719 1.10881 0.85859 0.77989 0.81809 0.78633 1.20474 1.20948 1.19450 0.96804 0.88777 0.92224 0.95005 0.90885 0.90944 0.91458 0.89797 0.90300 0.92287 0.91207 0.90402 0.87531 0.86370 0.81311 0.80545 0.93512 0.89437 0.77494 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 8.96 60.06 0.54 0.93 16 2 N -0.52 -9.08 4.50 -244.38 -1.10 -10.18 16 3 C 0.06 0.77 4.96 -3.83 -0.02 0.75 16 4 C -0.13 -1.52 5.46 -26.73 -0.15 -1.67 16 5 C 0.12 1.15 5.40 -4.04 -0.02 1.13 16 6 N -0.62 -5.33 2.87 -181.57 -0.52 -5.86 16 7 C 0.07 0.34 10.25 59.85 0.61 0.95 16 8 C 0.52 5.55 7.66 -10.99 -0.08 5.47 16 9 O -0.51 -8.01 15.14 5.55 0.08 -7.92 16 10 C -0.05 -0.36 4.88 -29.03 -0.14 -0.51 16 11 C 0.22 2.13 6.95 -155.42 -1.08 1.05 16 12 N -0.46 -5.95 10.60 -10.82 -0.11 -6.07 16 13 C -0.03 -0.27 11.87 -17.82 -0.21 -0.48 16 14 C -0.06 -0.41 12.04 -16.56 -0.20 -0.61 16 15 N -0.57 -4.00 6.15 -10.23 -0.06 -4.07 16 16 H 0.42 1.44 8.96 -40.82 -0.37 1.08 16 17 C 0.05 0.85 5.45 -4.97 -0.03 0.82 16 18 C 0.45 10.75 7.47 -10.98 -0.08 10.67 16 19 O -0.58 -15.84 13.91 5.55 0.08 -15.76 16 20 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 1.98 5.82 -51.93 -0.30 1.68 16 31 H 0.06 0.97 6.47 -51.93 -0.34 0.64 16 32 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 36 H 0.08 0.97 7.42 -51.93 -0.39 0.59 16 37 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.18 6.43 -51.93 -0.33 -0.16 16 40 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 41 H 0.11 0.37 7.40 -51.92 -0.38 -0.02 16 42 H 0.12 0.57 8.11 -51.93 -0.42 0.15 16 43 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 44 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 46 H 0.09 1.45 7.93 -51.93 -0.41 1.04 16 47 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 398.24 15.07 6.00 6.00 Total: -1.00 -38.65 398.24 -8.42 -47.07 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.32 Total: 8.84 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -1.10 Total: 10.43 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -1.13 Total: -64.89 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.16 Total: -23.69 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.65 -8.42 -47.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327277565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.476 kcal (2) G-P(sol) polarization free energy of solvation -38.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds