Wall clock time and date at job start Tue Mar 31 2020 21:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46891 * 111.00283 * 2 1 4 4 C 1.53005 * 109.47190 * 66.04527 * 3 2 1 5 5 C 1.53001 * 109.47315 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47147 * 179.97438 * 5 4 3 7 7 C 1.46506 * 119.99936 * 89.99619 * 6 5 4 8 8 C 1.34773 * 120.00036 * 270.27655 * 6 5 4 9 9 O 1.21283 * 120.00092 * 359.71995 * 8 6 5 10 10 C 1.50702 * 120.00430 * 179.72648 * 8 6 5 11 11 C 1.50698 * 109.47465 * 179.97438 * 10 8 6 12 12 N 1.30496 * 125.64540 * 304.68986 * 11 10 8 13 13 C 1.34128 * 109.25144 * 179.89364 * 12 11 10 14 14 C 1.34661 * 108.02349 * 0.36868 * 13 12 11 15 15 N 1.35039 * 125.64830 * 124.99756 * 11 10 8 16 16 H 0.96994 * 126.40368 * 359.97438 * 15 11 10 17 17 C 1.46903 * 111.00327 * 236.04386 * 2 1 3 18 18 C 1.50704 * 109.46890 * 293.95957 * 17 2 1 19 19 O 1.21285 * 120.00188 * 359.97438 * 18 17 2 20 20 N 1.34778 * 119.99538 * 179.97438 * 18 17 2 21 21 C 1.37099 * 119.99903 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99897 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00129 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99633 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99942 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47062 * 89.99953 * 25 23 21 27 27 H 1.48496 * 109.46669 * 209.99723 * 25 23 21 28 28 H 1.48491 * 109.46991 * 329.99575 * 25 23 21 29 29 H 1.09005 * 109.47107 * 59.99746 * 1 2 3 30 30 H 1.09001 * 109.47648 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47137 * 300.00049 * 1 2 3 32 32 H 1.08996 * 109.47547 * 306.04874 * 3 2 1 33 33 H 1.09003 * 109.47511 * 186.04109 * 3 2 1 34 34 H 1.09003 * 109.47218 * 59.99856 * 4 3 2 35 35 H 1.08997 * 109.46936 * 300.00406 * 4 3 2 36 36 H 1.08994 * 109.47531 * 59.99665 * 5 4 3 37 37 H 1.09005 * 109.46544 * 299.99600 * 5 4 3 38 38 H 1.08999 * 109.46892 * 90.00398 * 7 6 5 39 39 H 1.09000 * 109.46803 * 209.99571 * 7 6 5 40 40 H 1.09000 * 109.47214 * 330.00364 * 7 6 5 41 41 H 1.09009 * 109.46564 * 299.99895 * 10 8 6 42 42 H 1.09001 * 109.47030 * 59.99569 * 10 8 6 43 43 H 1.08007 * 125.98847 * 180.11771 * 13 12 11 44 44 H 1.08001 * 126.59755 * 179.81358 * 14 13 12 45 45 H 1.09002 * 109.46866 * 53.95685 * 17 2 1 46 46 H 1.08997 * 109.47606 * 173.95976 * 17 2 1 47 47 H 0.97006 * 120.00405 * 359.97438 * 20 18 17 48 48 H 0.97001 * 119.99278 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1792 3.4860 1.3181 6 7 1.8302 4.1430 2.5801 7 6 2.7381 4.0565 3.7266 8 6 0.6712 4.8224 2.6881 9 8 -0.0804 4.8940 1.7389 10 6 0.3092 5.4931 3.9881 11 6 -1.0249 6.1791 3.8451 12 7 -1.3311 7.0649 2.9371 13 6 -2.6021 7.4562 3.1119 14 6 -3.0999 6.7936 4.1733 15 7 -2.0997 5.9832 4.6388 16 1 -2.1531 5.3809 5.3973 17 6 1.9955 -0.7660 -1.1375 18 6 1.6368 -2.2205 -0.9728 19 8 1.0052 -2.5833 -0.0030 20 7 2.0180 -3.1180 -1.9032 21 6 1.6922 -4.4412 -1.7531 22 1 1.1298 -4.7643 -0.8896 23 6 2.0856 -5.3667 -2.7120 24 7 2.7695 -4.9735 -3.7630 25 14 1.6411 -7.1695 -2.5079 26 1 0.3289 -7.4318 -3.1517 27 1 2.6835 -8.0118 -3.1476 28 1 1.5577 -7.4981 -1.0622 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.5611 1.9273 -0.8308 33 1 3.0797 1.3443 -0.1082 34 1 2.0657 1.5015 2.1493 35 1 0.5472 2.0844 1.4265 36 1 1.7447 4.0417 0.4872 37 1 3.2636 3.4592 1.2097 38 1 3.4401 4.8898 3.6978 39 1 2.1615 4.0990 4.6506 40 1 3.2882 3.1164 3.6843 41 1 0.2507 4.7451 4.7789 42 1 1.0712 6.2304 4.2411 43 1 -3.1320 8.1794 2.5096 44 1 -4.0967 6.8837 4.5789 45 1 1.5612 -0.3873 -2.0628 46 1 3.0797 -0.6612 -1.1755 47 1 2.5228 -2.8278 -2.6790 48 1 3.0437 -5.6195 -4.4326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327277565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:34 Heat of formation + Delta-G solvation = -27.849354 kcal Electronic energy + Delta-G solvation = -28242.350769 eV Core-core repulsion = 24139.670669 eV Total energy + Delta-G solvation = -4102.680100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.96394 -40.80503 -40.35734 -38.24223 -36.68540 -35.87179 -33.78002 -33.40531 -33.26965 -32.37281 -29.49781 -28.66288 -27.98887 -27.10087 -26.28456 -24.20575 -22.50150 -22.00195 -21.69321 -20.98841 -20.18110 -19.83926 -18.81261 -18.08936 -17.85780 -17.01725 -16.86054 -16.62765 -16.54148 -16.34221 -15.83889 -15.62743 -15.31970 -15.16269 -14.94505 -14.73593 -14.68628 -14.22384 -14.04654 -13.83591 -13.76636 -13.48942 -13.27421 -13.15298 -13.06937 -12.97716 -12.76612 -12.61343 -12.52859 -12.39528 -12.27549 -12.11276 -11.53274 -11.45742 -10.99540 -10.92069 -10.82124 -10.29109 -9.99793 -9.61615 -9.34006 -9.23987 -8.45994 -5.94639 1.08824 1.37956 1.41447 1.54415 1.67323 1.89610 2.05737 2.25079 2.28580 2.41204 2.80174 3.20609 3.35822 3.41911 3.73412 3.99596 4.00960 4.12523 4.16413 4.32970 4.36948 4.38725 4.42024 4.45062 4.47699 4.52474 4.58171 4.59717 4.61143 4.72991 4.77326 4.78338 4.87118 5.03574 5.04855 5.14713 5.15766 5.29399 5.41524 5.60644 5.82855 5.88343 6.05414 6.19965 6.40324 6.56937 6.61510 7.13555 7.21126 7.24631 7.57023 8.13088 8.71444 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.001683 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.160029 B =16628.208875 C =17147.705263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.534 5.534 3 C 0.059 3.941 4 C -0.115 4.115 5 C 0.122 3.878 6 N -0.615 5.615 7 C 0.066 3.934 8 C 0.507 3.493 9 O -0.571 6.571 10 C -0.046 4.046 11 C 0.199 3.801 12 N -0.515 5.515 13 C -0.070 4.070 14 C -0.037 4.037 15 N -0.555 5.555 16 H 0.435 0.565 17 C 0.056 3.944 18 C 0.441 3.559 19 O -0.615 6.615 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.175 0.825 44 H 0.214 0.786 45 H 0.063 0.937 46 H 0.115 0.885 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 24.702 18.967 31.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.259 5.259 3 C -0.069 4.069 4 C -0.154 4.154 5 C -0.001 4.001 6 N -0.348 5.348 7 C -0.075 4.075 8 C 0.295 3.705 9 O -0.449 6.449 10 C -0.087 4.087 11 C -0.066 4.066 12 N -0.235 5.235 13 C -0.217 4.217 14 C -0.172 4.172 15 N -0.160 5.160 16 H 0.277 0.723 17 C -0.075 4.075 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.198 1.198 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.192 0.808 44 H 0.231 0.769 45 H 0.081 0.919 46 H 0.133 0.867 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.047 24.491 18.755 30.865 hybrid contribution -1.087 -1.005 -0.643 1.614 sum -2.134 23.486 18.111 29.735 Atomic orbital electron populations 1.22361 0.87613 1.01854 0.99901 1.61546 1.08255 1.13835 1.42225 1.22143 1.01190 0.86474 0.97103 1.21772 1.00389 0.95516 0.97765 1.21356 1.01416 0.91320 0.86051 1.47932 1.20407 1.51891 1.14580 1.22181 0.93961 1.03936 0.87449 1.20825 0.80968 0.78465 0.90254 1.90767 1.51164 1.61384 1.41595 1.20113 0.91218 1.00873 0.96508 1.22785 0.92143 0.99806 0.91874 1.70150 1.16354 1.13902 1.23108 1.22751 0.92355 1.05795 1.00827 1.23277 0.96261 0.97784 0.99899 1.43206 1.10654 1.34854 1.27308 0.72347 1.21767 1.02339 0.90204 0.93156 1.20767 0.83711 0.88746 0.83906 1.90453 1.45162 1.81438 1.33056 1.41939 1.50107 1.07059 1.22101 1.19658 1.34419 0.84030 1.08102 0.90345 1.26045 0.96267 1.04359 0.94681 1.69678 1.38127 1.37189 1.11157 0.84919 0.78191 0.76778 0.78389 1.19787 1.19446 1.19756 0.96105 0.92465 0.91186 0.94824 0.88491 0.90692 0.94117 0.92127 0.87438 0.90552 0.88669 0.89888 0.83585 0.83973 0.80801 0.76925 0.91930 0.86656 0.77019 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 8.96 127.69 1.14 2.26 16 2 N -0.53 -18.26 4.50 -927.07 -4.17 -22.43 16 3 C 0.06 1.47 4.96 86.31 0.43 1.90 16 4 C -0.12 -2.60 5.46 30.60 0.17 -2.43 16 5 C 0.12 2.21 5.40 86.38 0.47 2.68 16 6 N -0.62 -9.49 2.87 -846.75 -2.43 -11.93 16 7 C 0.07 0.37 10.25 127.77 1.31 1.68 16 8 C 0.51 10.54 7.66 87.66 0.67 11.21 16 9 O -0.57 -18.65 15.14 -3.04 -0.05 -18.70 16 10 C -0.05 -0.54 4.88 29.10 0.14 -0.40 16 11 C 0.20 3.77 6.95 138.13 0.96 4.73 16 12 N -0.52 -13.70 10.60 -188.14 -1.99 -15.69 16 13 C -0.07 -1.47 11.87 83.52 0.99 -0.48 16 14 C -0.04 -0.51 12.04 83.08 1.00 0.49 16 15 N -0.56 -6.89 6.15 -186.28 -1.15 -8.04 16 16 H 0.44 1.87 8.96 -92.71 -0.83 1.04 16 17 C 0.06 2.04 5.45 85.56 0.47 2.51 16 18 C 0.44 21.59 7.47 87.66 0.66 22.24 16 19 O -0.61 -34.71 13.91 -3.05 -0.04 -34.75 16 20 N -0.57 -30.08 5.29 -306.98 -1.62 -31.70 16 21 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 24 N -0.92 -50.18 13.05 21.66 0.28 -49.90 16 25 Si 0.99 43.41 29.55 68.60 2.03 45.43 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 29 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 2.50 5.82 -2.39 -0.01 2.48 16 31 H 0.07 2.33 6.47 -2.39 -0.02 2.31 16 32 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 33 H 0.10 1.98 7.93 -2.39 -0.02 1.96 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.14 6.55 -2.39 -0.02 1.12 16 36 H 0.06 1.41 7.42 -2.39 -0.02 1.39 16 37 H 0.11 1.32 8.07 -2.38 -0.02 1.31 16 38 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.09 0.07 6.43 -2.39 -0.02 0.05 16 40 H 0.08 0.43 8.07 -2.39 -0.02 0.41 16 41 H 0.15 0.45 7.40 -2.38 -0.02 0.43 16 42 H 0.14 0.96 8.11 -2.39 -0.02 0.94 16 43 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 44 H 0.21 1.10 8.06 -2.91 -0.02 1.07 16 45 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 46 H 0.12 3.54 7.93 -2.39 -0.02 3.52 16 47 H 0.40 19.67 7.90 -92.70 -0.73 18.93 16 48 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -88.91 398.24 -0.03 -88.94 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.57 Total: 31.03 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: 9.68 Total: 27.74 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -11.08 Total: -139.69 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -0.09 Total: -53.45 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -88.91 -0.03 -88.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327277565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.087 kcal (2) G-P(sol) polarization free energy of solvation -88.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds