Wall clock time and date at job start Tue Mar 31 2020 21:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99968 * 2 1 4 4 C 1.52998 * 109.47019 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.46959 * 179.97438 * 4 3 2 6 6 C 1.34808 * 126.59185 * 124.99886 * 5 4 3 7 7 C 1.36599 * 106.83769 * 180.02562 * 6 5 4 8 8 C 1.47525 * 125.77341 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99750 * 7.12120 * 8 7 6 10 10 N 1.34776 * 120.00308 * 187.12164 * 8 7 6 11 11 C 1.46930 * 120.62607 * 6.68150 * 10 8 7 12 12 C 1.53625 * 108.54129 * 126.36945 * 11 10 8 13 13 C 1.53043 * 109.24258 * 54.85382 * 12 11 10 14 14 C 1.53044 * 109.53592 * 298.51306 * 13 12 11 15 15 C 1.46920 * 120.63009 * 186.95919 * 10 8 7 16 16 H 1.09008 * 109.58626 * 113.79921 * 15 10 8 17 17 C 1.52999 * 109.59031 * 353.51766 * 15 10 8 18 18 N 1.46505 * 109.46948 * 68.42164 * 17 15 10 19 19 C 1.36936 * 119.99786 * 174.98968 * 18 17 15 20 20 H 1.08003 * 120.00203 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00079 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00537 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99809 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47479 * 89.99897 * 23 21 19 25 25 H 1.48510 * 109.47167 * 209.99653 * 23 21 19 26 26 H 1.48496 * 109.47372 * 329.99238 * 23 21 19 27 27 N 1.34401 * 108.45749 * 359.97438 * 7 6 5 28 28 N 1.28758 * 109.52116 * 0.02562 * 27 7 6 29 29 H 1.09000 * 109.46831 * 299.99858 * 1 2 3 30 30 H 1.08992 * 109.47271 * 60.00361 * 1 2 3 31 31 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47398 * 59.99745 * 3 2 1 33 33 H 1.09005 * 109.46938 * 299.99733 * 3 2 1 34 34 H 1.09000 * 109.47439 * 59.99989 * 4 3 2 35 35 H 1.08997 * 109.46728 * 299.99130 * 4 3 2 36 36 H 1.08000 * 126.58569 * 359.76535 * 6 5 4 37 37 H 1.09002 * 109.58401 * 246.19880 * 11 10 8 38 38 H 1.08994 * 109.58846 * 6.63011 * 11 10 8 39 39 H 1.09006 * 109.63287 * 294.86180 * 12 11 10 40 40 H 1.08997 * 109.43004 * 174.72211 * 12 11 10 41 41 H 1.08992 * 109.46044 * 178.49261 * 13 12 11 42 42 H 1.08993 * 109.44697 * 58.52316 * 13 12 11 43 43 H 1.09003 * 109.49611 * 301.40795 * 14 13 12 44 44 H 1.09005 * 109.52179 * 181.33446 * 14 13 12 45 45 H 1.08993 * 109.47339 * 188.42441 * 17 15 10 46 46 H 1.08998 * 109.47093 * 308.42573 * 17 15 10 47 47 H 0.97004 * 119.99984 * 354.99989 * 18 17 15 48 48 H 0.96996 * 120.00291 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5231 -0.0013 6 6 5.0257 3.0049 0.8849 7 6 5.3061 4.2872 0.5065 8 6 6.2388 5.2035 1.1897 9 8 6.9324 4.7964 2.1016 10 7 6.3221 6.4920 0.8031 11 6 5.3909 7.0357 -0.1949 12 6 4.7270 8.2918 0.3896 13 6 5.8120 9.2739 0.8372 14 6 6.6673 8.6285 1.9300 15 6 7.3495 7.3778 1.3672 16 1 8.0529 7.6657 0.5857 17 6 8.0964 6.6497 2.4865 18 7 8.8964 5.5641 1.9140 19 6 9.7338 4.8347 2.7151 20 1 9.8043 5.0595 3.7692 21 6 10.4915 3.8058 2.1728 22 7 11.2960 3.1044 2.9429 23 14 10.3692 3.4166 0.3500 24 1 11.3745 4.2159 -0.3955 25 1 10.6279 1.9702 0.1341 26 1 9.0079 3.7540 -0.1380 27 7 4.5893 4.5725 -0.5940 28 7 3.8809 3.5490 -0.9234 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8465 0.8900 33 1 1.6886 1.8464 -0.8901 34 1 3.8568 0.6439 -0.8908 35 1 3.8574 0.6437 0.8892 36 1 5.4380 2.4797 1.7337 37 1 5.9377 7.2962 -1.1011 38 1 4.6285 6.2921 -0.4267 39 1 4.1107 8.0157 1.2453 40 1 4.1039 8.7604 -0.3721 41 1 5.3449 10.1778 1.2280 42 1 6.4430 9.5300 -0.0138 43 1 6.0327 8.3495 2.7712 44 1 7.4251 9.3367 2.2653 45 1 8.7520 7.3513 3.0021 46 1 7.3775 6.2369 3.1942 47 1 8.8330 5.3621 0.9673 48 1 11.8257 2.3857 2.5639 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328620374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:32 Heat of formation + Delta-G solvation = 61.490997 kcal Electronic energy + Delta-G solvation = -30563.710148 eV Core-core repulsion = 26464.904136 eV Total energy + Delta-G solvation = -4098.806012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.35993 -41.28047 -39.09961 -38.18535 -36.59277 -35.94277 -33.88506 -33.69221 -32.13596 -31.91102 -30.74491 -27.91350 -27.44399 -25.96136 -25.19419 -24.48254 -24.00902 -22.86734 -22.61864 -21.52712 -20.48910 -19.60457 -18.47117 -17.66553 -17.50979 -17.01668 -16.92096 -16.76939 -16.60284 -16.07934 -15.80188 -15.75377 -15.56583 -15.41075 -15.07471 -14.83320 -14.57542 -14.51606 -14.12338 -13.80826 -13.71794 -13.49143 -13.35638 -13.23564 -13.05904 -12.88459 -12.57822 -12.41316 -12.26897 -12.22290 -11.97341 -11.79793 -11.70482 -11.48893 -11.39468 -10.98924 -10.95717 -10.81041 -10.37909 -10.11207 -9.52416 -8.88210 -7.93034 -5.15541 0.05521 0.64449 0.86176 1.31891 1.34164 1.41874 2.05045 2.36531 2.52102 2.64724 3.14316 3.37981 3.40179 3.63049 3.69524 3.73196 3.89731 3.95220 4.05222 4.06782 4.14210 4.14880 4.29981 4.34730 4.38518 4.41838 4.46970 4.54112 4.56001 4.63340 4.69886 4.82627 4.90448 4.95893 5.05707 5.11692 5.17734 5.21065 5.28321 5.31187 5.39180 5.53880 5.82358 5.87165 5.97824 6.30041 6.51245 6.82630 7.18147 7.38176 7.97125 8.15695 9.30526 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009193 B = 0.004124 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.926226 B = 6788.151275 C = 9096.948402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.058 3.942 4 C 0.118 3.882 5 N -0.347 5.347 6 C 0.100 3.900 7 C -0.110 4.110 8 C 0.558 3.442 9 O -0.499 6.499 10 N -0.601 5.601 11 C 0.083 3.917 12 C -0.125 4.125 13 C -0.113 4.113 14 C -0.118 4.118 15 C 0.142 3.858 16 H 0.071 0.929 17 C 0.164 3.836 18 N -0.724 5.724 19 C -0.189 4.189 20 H 0.052 0.948 21 C -0.070 4.070 22 N -0.992 5.992 23 Si 0.951 3.049 24 H -0.282 1.282 25 H -0.297 1.297 26 H -0.273 1.273 27 N -0.212 5.212 28 N -0.081 5.081 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.025 0.975 46 H 0.034 0.966 47 H 0.355 0.645 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.762 3.481 -9.050 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.019 4.019 4 C -0.002 4.002 5 N -0.134 5.134 6 C -0.056 4.056 7 C -0.249 4.249 8 C 0.342 3.658 9 O -0.371 6.371 10 N -0.337 5.337 11 C -0.039 4.039 12 C -0.164 4.164 13 C -0.150 4.150 14 C -0.157 4.157 15 C 0.039 3.961 16 H 0.089 0.911 17 C 0.038 3.962 18 N -0.368 5.368 19 C -0.321 4.321 20 H 0.070 0.930 21 C -0.260 4.260 22 N -0.646 5.646 23 Si 0.781 3.219 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.199 1.199 27 N -0.085 5.085 28 N -0.061 5.061 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.237 0.763 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.043 0.957 46 H 0.052 0.948 47 H 0.188 0.812 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -26.017 3.376 -9.607 27.939 hybrid contribution 0.784 -0.936 0.014 1.221 sum -25.233 2.441 -9.593 27.105 Atomic orbital electron populations 1.22989 0.78465 1.04356 1.01095 1.87766 1.22160 1.26579 1.95705 1.22508 0.91514 0.85709 1.02209 1.22029 0.93388 0.76503 1.08304 1.50330 1.29913 1.13931 1.19187 1.23667 0.91512 0.94317 0.96128 1.21707 1.07351 0.96534 0.99328 1.17338 0.82084 0.82079 0.84250 1.91222 1.40542 1.76641 1.28651 1.47822 1.33802 1.08736 1.43308 1.22668 0.93340 0.98128 0.89810 1.21958 0.97989 0.95038 1.01376 1.21511 0.97057 0.98305 0.98175 1.21851 0.99916 0.95001 0.98945 1.21535 0.88716 0.90445 0.95434 0.91131 1.20949 0.92473 0.87787 0.94941 1.42592 1.49022 1.38476 1.06667 1.18968 1.12152 1.08739 0.92212 0.92992 1.25219 1.00419 0.99100 1.01231 1.69869 1.33049 1.25707 1.35962 0.85442 0.77500 0.76625 0.82298 1.20837 1.22360 1.19937 1.74334 1.04988 1.18656 1.10562 1.81821 1.20920 0.91005 1.12306 0.93067 0.92983 0.87795 0.92142 0.91690 0.86428 0.84546 0.76337 0.91701 0.86137 0.92424 0.88744 0.89705 0.91200 0.91947 0.89425 0.95699 0.94827 0.81248 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.88 10.70 -148.98 -1.59 -7.47 16 3 C 0.06 0.80 6.14 71.98 0.44 1.24 16 4 C 0.12 1.69 6.91 86.38 0.60 2.29 16 5 N -0.35 -7.66 3.69 -347.09 -1.28 -8.94 16 6 C 0.10 2.68 11.28 83.85 0.95 3.62 16 7 C -0.11 -3.55 6.70 40.82 0.27 -3.27 16 8 C 0.56 21.02 7.00 86.69 0.61 21.63 16 9 O -0.50 -22.98 10.67 -4.01 -0.04 -23.02 16 10 N -0.60 -19.36 2.97 -797.94 -2.37 -21.73 16 11 C 0.08 2.07 6.12 86.51 0.53 2.60 16 12 C -0.13 -2.35 6.10 30.82 0.19 -2.17 16 13 C -0.11 -2.01 5.88 30.62 0.18 -1.83 16 14 C -0.12 -2.78 5.37 30.67 0.16 -2.62 16 15 C 0.14 4.56 2.93 44.97 0.13 4.69 16 16 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 17 C 0.16 6.96 4.87 86.38 0.42 7.38 16 18 N -0.72 -37.36 3.02 -343.46 -1.04 -38.40 16 19 C -0.19 -11.63 10.18 84.03 0.86 -10.77 16 20 H 0.05 3.50 8.06 -2.91 -0.02 3.47 16 21 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 22 N -0.99 -67.13 13.97 21.65 0.30 -66.82 16 23 Si 0.95 50.27 27.73 68.60 1.90 52.18 16 24 H -0.28 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.30 -15.61 7.11 99.48 0.71 -14.91 16 26 H -0.27 -13.90 6.52 99.48 0.65 -13.25 16 27 N -0.21 -6.25 8.78 -49.99 -0.44 -6.69 16 28 N -0.08 -2.13 13.65 37.02 0.51 -1.63 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.14 1.43 8.08 -2.39 -0.02 1.41 16 36 H 0.22 5.15 8.06 -2.91 -0.02 5.12 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.12 3.17 4.09 -40.70 -0.17 3.00 16 39 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.03 1.56 6.34 -2.39 -0.02 1.55 16 47 H 0.36 18.24 4.86 -92.71 -0.45 17.79 16 48 H 0.25 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -81.91 381.83 3.30 -78.61 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.30 Total: 23.59 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 7.05 Total: 20.33 kcal Atomic # 7 Polarization: -139.89 SS G_CDS: -4.32 Total: -144.21 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.64 Total: -30.50 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 1.90 Total: 52.18 kcal Total: -81.91 3.30 -78.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328620374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.100 kcal (2) G-P(sol) polarization free energy of solvation -81.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds