Wall clock time and date at job start Tue Mar 31 2020 21:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 119.99683 * 2 1 4 4 C 1.34773 * 119.99946 * 180.02562 * 2 1 3 5 5 O 1.21279 * 120.00096 * 359.97438 * 4 2 1 6 6 C 1.50704 * 119.99923 * 179.97438 * 4 2 1 7 7 N 1.46504 * 109.47185 * 179.97438 * 6 4 2 8 8 C 1.34961 * 125.97344 * 125.01680 * 7 6 4 9 9 C 1.35241 * 107.86276 * 179.68990 * 8 7 6 10 10 C 1.40409 * 107.86397 * 0.43326 * 9 8 7 11 11 N 1.40157 * 125.97525 * 179.82020 * 10 9 8 12 12 C 1.34777 * 119.99839 * 359.72021 * 11 10 9 13 13 O 1.21290 * 119.99923 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99993 * 179.97438 * 12 11 10 15 15 H 1.08999 * 109.47018 * 319.99583 * 14 12 11 16 16 N 1.46906 * 109.47187 * 200.00134 * 14 12 11 17 17 C 1.52994 * 109.47012 * 80.00326 * 14 12 11 18 18 C 1.53004 * 109.47238 * 184.99957 * 17 14 12 19 19 C 1.52997 * 109.47085 * 179.97438 * 18 17 14 20 20 C 1.50702 * 109.47050 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00010 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00485 * 180.02562 * 20 19 18 23 23 N 1.31523 * 119.99542 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00327 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47011 * 90.00007 * 24 22 20 26 26 H 1.48506 * 109.46868 * 209.99607 * 24 22 20 27 27 H 1.48488 * 109.47062 * 329.99675 * 24 22 20 28 28 N 1.31219 * 108.05300 * 359.56291 * 10 9 8 29 29 H 1.08997 * 109.47521 * 269.99729 * 1 2 3 30 30 H 1.09002 * 109.47535 * 29.99778 * 1 2 3 31 31 H 1.09007 * 109.47082 * 149.99984 * 1 2 3 32 32 H 1.09001 * 109.46926 * 269.99770 * 3 2 1 33 33 H 1.09000 * 109.46931 * 30.00367 * 3 2 1 34 34 H 1.09002 * 109.46965 * 150.00022 * 3 2 1 35 35 H 1.09000 * 109.47053 * 60.00104 * 6 4 2 36 36 H 1.08991 * 109.47105 * 300.00121 * 6 4 2 37 37 H 1.08007 * 126.07417 * 359.97438 * 8 7 6 38 38 H 1.07997 * 126.07119 * 180.25254 * 9 8 7 39 39 H 0.96996 * 120.00077 * 179.71154 * 11 10 9 40 40 H 1.00896 * 111.00309 * 176.04524 * 16 14 12 41 41 H 1.00902 * 110.99923 * 300.00687 * 16 14 12 42 42 H 1.09003 * 109.46995 * 304.99548 * 17 14 12 43 43 H 1.09003 * 109.47429 * 64.99905 * 17 14 12 44 44 H 1.08993 * 109.46824 * 299.99739 * 18 17 14 45 45 H 1.09003 * 109.46953 * 59.99657 * 18 17 14 46 46 H 1.08993 * 109.47353 * 299.99754 * 19 18 17 47 47 H 1.09003 * 109.47229 * 60.00165 * 19 18 17 48 48 H 0.96997 * 119.99978 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1342 -2.5484 -0.0010 8 6 4.9890 -3.0871 -0.8957 9 6 5.1956 -4.3774 -0.5472 10 6 4.4301 -4.6416 0.5998 11 7 4.3598 -5.8657 1.2788 12 6 5.0655 -6.9244 0.8342 13 8 5.7610 -6.8179 -0.1538 14 6 4.9904 -8.2405 1.5646 15 1 4.9838 -8.0596 2.6394 16 7 6.1561 -9.0626 1.2135 17 6 3.7093 -8.9742 1.1629 18 6 3.5701 -10.2504 1.9954 19 6 2.2888 -10.9838 1.5942 20 6 2.1513 -12.2404 2.4146 21 1 2.9026 -12.4907 3.1490 22 6 1.0666 -13.0707 2.2276 23 7 0.1515 -12.7657 1.3336 24 14 0.8967 -14.6287 3.2441 25 1 0.1390 -14.3294 4.4858 26 1 0.1699 -15.6567 2.4564 27 1 2.2457 -15.1383 3.5979 28 7 3.7962 -3.5406 0.9282 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.3791 1.5834 -1.0277 33 1 1.6083 2.0283 0.5139 34 1 3.1498 1.1385 0.5138 35 1 4.0095 -0.6535 0.8889 36 1 4.0088 -0.6532 -0.8910 37 1 5.4333 -2.5770 -1.7377 38 1 5.8336 -5.0807 -1.0617 39 1 3.8034 -5.9509 2.0687 40 1 6.1628 -9.9238 1.7392 41 1 6.1849 -9.2442 0.2214 42 1 2.8495 -8.3284 1.3414 43 1 3.7555 -9.2336 0.1052 44 1 4.4298 -10.8961 1.8169 45 1 3.5239 -9.9910 3.0531 46 1 1.4292 -10.3379 1.7730 47 1 2.3346 -11.2432 0.5364 48 1 -0.6119 -13.3495 1.2023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329104820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:45 Heat of formation + Delta-G solvation = 17.316787 kcal Electronic energy + Delta-G solvation = -28245.437361 eV Core-core repulsion = 24144.715812 eV Total energy + Delta-G solvation = -4100.721549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52945 -40.21111 -39.56877 -36.16056 -35.99967 -35.02294 -33.35880 -32.79377 -31.23060 -30.16245 -29.13066 -28.04851 -27.48548 -25.97924 -25.11275 -22.89785 -21.75573 -21.12079 -20.16974 -19.81831 -19.72992 -17.79359 -17.48093 -17.25316 -16.80410 -16.41464 -16.30573 -15.68122 -15.30332 -14.99443 -14.74311 -14.64257 -14.45501 -14.08497 -13.84678 -13.58938 -13.40488 -13.24529 -13.23104 -13.15519 -13.05791 -12.60927 -12.51123 -12.44794 -12.03580 -11.81407 -11.20659 -11.03538 -10.80726 -10.76326 -10.65195 -10.55202 -10.24306 -9.79593 -9.72888 -9.37170 -9.23116 -9.11746 -8.86559 -8.51326 -8.35122 -8.28247 -6.00007 -4.03083 1.62556 1.94341 2.12204 2.36992 2.51856 3.10330 3.22291 3.32065 3.38390 3.41489 3.84076 4.19544 4.37507 4.45083 4.52038 4.54932 4.69897 4.75590 4.81616 4.82591 5.00135 5.10942 5.20717 5.26262 5.29744 5.35665 5.39496 5.60625 5.74538 5.77403 5.85856 5.97152 6.14794 6.27791 6.59266 6.65082 6.75838 6.80431 6.91705 7.01303 7.04699 7.23565 7.59531 7.65967 7.68135 7.78756 7.82993 7.99197 8.15146 8.40691 9.04163 9.61248 11.11183 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.001961 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.634403 B =14278.469458 C =16006.020351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.626 5.626 3 C 0.074 3.926 4 C 0.495 3.505 5 O -0.498 6.498 6 C 0.127 3.873 7 N -0.366 5.366 8 C 0.057 3.943 9 C -0.257 4.257 10 C 0.302 3.698 11 N -0.637 5.637 12 C 0.534 3.466 13 O -0.509 6.509 14 C 0.082 3.918 15 H 0.105 0.895 16 N -0.829 5.829 17 C -0.149 4.149 18 C -0.108 4.108 19 C 0.021 3.979 20 C -0.522 4.522 21 H 0.055 0.945 22 C 0.056 3.944 23 N -0.895 5.895 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 N -0.297 5.297 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.417 0.583 40 H 0.354 0.646 41 H 0.350 0.650 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.016 0.984 47 H 0.015 0.985 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.331 32.370 -3.769 33.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.362 5.362 3 C -0.070 4.070 4 C 0.280 3.720 5 O -0.371 6.371 6 C 0.001 3.999 7 N -0.150 5.150 8 C -0.087 4.087 9 C -0.288 4.288 10 C 0.045 3.955 11 N -0.286 5.286 12 C 0.321 3.679 13 O -0.381 6.381 14 C -0.034 4.034 15 H 0.122 0.878 16 N -0.362 5.362 17 C -0.189 4.189 18 C -0.146 4.146 19 C -0.016 4.016 20 C -0.560 4.560 21 H 0.073 0.927 22 C -0.146 4.146 23 N -0.534 5.534 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 N -0.126 5.126 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.193 0.807 38 H 0.191 0.809 39 H 0.253 0.747 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.976 32.993 -3.482 34.121 hybrid contribution -0.868 -1.661 0.024 1.875 sum 7.108 31.332 -3.458 32.313 Atomic orbital electron populations 1.21658 0.78528 1.03292 1.02164 1.47737 1.07437 1.06017 1.75045 1.21891 0.97354 0.85510 1.02202 1.20702 0.89949 0.83878 0.77482 1.90843 1.69261 1.30531 1.46423 1.21417 0.92556 0.80113 1.05799 1.47476 1.36839 1.08492 1.22210 1.22546 0.95377 0.94751 0.96047 1.21889 1.09500 0.96595 1.00769 1.19228 0.95948 0.86748 0.93555 1.42775 1.47995 1.06992 1.30861 1.20917 0.77707 0.84624 0.84653 1.90578 1.38566 1.83421 1.25526 1.21385 0.91953 0.89912 1.00112 0.87757 1.58680 1.40709 1.23991 1.12791 1.22452 0.95843 0.98954 1.01662 1.21652 1.01149 0.93699 0.98084 1.19088 0.91116 0.94645 0.96769 1.21241 1.07272 1.06732 1.20776 0.92655 1.25046 0.95921 0.98174 0.95416 1.69971 1.11534 1.38017 1.33863 0.86588 0.78163 0.83068 0.80146 1.20675 1.21241 1.19860 1.77470 1.24325 0.96006 1.14787 0.92502 0.91062 0.90360 0.92107 0.90477 0.90886 0.87024 0.85766 0.80654 0.80904 0.74719 0.83019 0.83598 0.91354 0.91493 0.93240 0.92929 0.96556 0.96649 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.44 59.84 0.62 1.15 16 2 N -0.63 -4.00 3.27 -189.51 -0.62 -4.62 16 3 C 0.07 0.13 10.24 59.85 0.61 0.74 16 4 C 0.49 4.85 7.70 -10.99 -0.08 4.77 16 5 O -0.50 -7.74 15.28 5.56 0.08 -7.65 16 6 C 0.13 0.86 5.54 -5.19 -0.03 0.83 16 7 N -0.37 -4.21 3.40 -62.56 -0.21 -4.42 16 8 C 0.06 0.60 11.44 -17.24 -0.20 0.41 16 9 C -0.26 -3.62 9.61 -39.83 -0.38 -4.01 16 10 C 0.30 4.64 8.11 -154.39 -1.25 3.39 16 11 N -0.64 -9.04 5.45 -11.13 -0.06 -9.10 16 12 C 0.53 8.11 7.05 -10.98 -0.08 8.03 16 13 O -0.51 -8.80 13.38 5.55 0.07 -8.73 16 14 C 0.08 1.15 3.21 -68.86 -0.22 0.92 16 15 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 16 N -0.83 -11.45 8.94 -5.65 -0.05 -11.50 16 17 C -0.15 -2.45 4.84 -26.73 -0.13 -2.58 16 18 C -0.11 -2.09 4.92 -26.73 -0.13 -2.22 16 19 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 20 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 24 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 N -0.30 -4.51 11.66 31.44 0.37 -4.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 31 H 0.08 0.66 7.42 -51.93 -0.39 0.27 16 32 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 33 H 0.08 0.06 8.07 -51.93 -0.42 -0.36 16 34 H 0.07 0.02 6.44 -51.93 -0.33 -0.31 16 35 H 0.11 0.50 7.40 -51.93 -0.38 0.11 16 36 H 0.12 0.31 8.03 -51.93 -0.42 -0.10 16 37 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.17 2.59 5.92 -52.49 -0.31 2.28 16 39 H 0.42 5.06 8.82 -40.82 -0.36 4.70 16 40 H 0.35 4.57 7.55 -39.29 -0.30 4.28 16 41 H 0.35 4.96 8.58 -39.29 -0.34 4.62 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.91 6.87 -51.93 -0.36 0.55 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -39.58 400.58 -7.85 -47.43 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.37 Total: 8.13 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.82 Total: -1.70 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.16 Total: -60.28 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.16 Total: -16.38 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.58 -7.85 -47.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329104820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.743 kcal (2) G-P(sol) polarization free energy of solvation -39.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds