Wall clock time and date at job start Tue Mar 31 2020 21:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 119.99683 * 2 1 4 4 C 1.34773 * 119.99946 * 180.02562 * 2 1 3 5 5 O 1.21279 * 120.00096 * 359.97438 * 4 2 1 6 6 C 1.50704 * 119.99923 * 179.97438 * 4 2 1 7 7 N 1.46504 * 109.47185 * 179.97438 * 6 4 2 8 8 C 1.34961 * 125.97344 * 125.01680 * 7 6 4 9 9 C 1.35241 * 107.86276 * 179.68990 * 8 7 6 10 10 C 1.40409 * 107.86397 * 0.43326 * 9 8 7 11 11 N 1.40157 * 125.97525 * 179.82020 * 10 9 8 12 12 C 1.34777 * 119.99839 * 359.72021 * 11 10 9 13 13 O 1.21290 * 119.99923 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99993 * 179.97438 * 12 11 10 15 15 H 1.08999 * 109.47018 * 319.99583 * 14 12 11 16 16 N 1.46906 * 109.47187 * 200.00134 * 14 12 11 17 17 C 1.52994 * 109.47012 * 80.00326 * 14 12 11 18 18 C 1.53004 * 109.47238 * 184.99957 * 17 14 12 19 19 C 1.52997 * 109.47085 * 179.97438 * 18 17 14 20 20 C 1.50702 * 109.47050 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00010 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00485 * 180.02562 * 20 19 18 23 23 N 1.31523 * 119.99542 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00327 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47011 * 90.00007 * 24 22 20 26 26 H 1.48506 * 109.46868 * 209.99607 * 24 22 20 27 27 H 1.48488 * 109.47062 * 329.99675 * 24 22 20 28 28 N 1.31219 * 108.05300 * 359.56291 * 10 9 8 29 29 H 1.08997 * 109.47521 * 269.99729 * 1 2 3 30 30 H 1.09002 * 109.47535 * 29.99778 * 1 2 3 31 31 H 1.09007 * 109.47082 * 149.99984 * 1 2 3 32 32 H 1.09001 * 109.46926 * 269.99770 * 3 2 1 33 33 H 1.09000 * 109.46931 * 30.00367 * 3 2 1 34 34 H 1.09002 * 109.46965 * 150.00022 * 3 2 1 35 35 H 1.09000 * 109.47053 * 60.00104 * 6 4 2 36 36 H 1.08991 * 109.47105 * 300.00121 * 6 4 2 37 37 H 1.08007 * 126.07417 * 359.97438 * 8 7 6 38 38 H 1.07997 * 126.07119 * 180.25254 * 9 8 7 39 39 H 0.96996 * 120.00077 * 179.71154 * 11 10 9 40 40 H 1.00896 * 111.00309 * 176.04524 * 16 14 12 41 41 H 1.00902 * 110.99923 * 300.00687 * 16 14 12 42 42 H 1.09003 * 109.46995 * 304.99548 * 17 14 12 43 43 H 1.09003 * 109.47429 * 64.99905 * 17 14 12 44 44 H 1.08993 * 109.46824 * 299.99739 * 18 17 14 45 45 H 1.09003 * 109.46953 * 59.99657 * 18 17 14 46 46 H 1.08993 * 109.47353 * 299.99754 * 19 18 17 47 47 H 1.09003 * 109.47229 * 60.00165 * 19 18 17 48 48 H 0.96997 * 119.99978 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1342 -2.5484 -0.0010 8 6 4.9890 -3.0871 -0.8957 9 6 5.1956 -4.3774 -0.5472 10 6 4.4301 -4.6416 0.5998 11 7 4.3598 -5.8657 1.2788 12 6 5.0655 -6.9244 0.8342 13 8 5.7610 -6.8179 -0.1538 14 6 4.9904 -8.2405 1.5646 15 1 4.9838 -8.0596 2.6394 16 7 6.1561 -9.0626 1.2135 17 6 3.7093 -8.9742 1.1629 18 6 3.5701 -10.2504 1.9954 19 6 2.2888 -10.9838 1.5942 20 6 2.1513 -12.2404 2.4146 21 1 2.9026 -12.4907 3.1490 22 6 1.0666 -13.0707 2.2276 23 7 0.1515 -12.7657 1.3336 24 14 0.8967 -14.6287 3.2441 25 1 0.1390 -14.3294 4.4858 26 1 0.1699 -15.6567 2.4564 27 1 2.2457 -15.1383 3.5979 28 7 3.7962 -3.5406 0.9282 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.3791 1.5834 -1.0277 33 1 1.6083 2.0283 0.5139 34 1 3.1498 1.1385 0.5138 35 1 4.0095 -0.6535 0.8889 36 1 4.0088 -0.6532 -0.8910 37 1 5.4333 -2.5770 -1.7377 38 1 5.8336 -5.0807 -1.0617 39 1 3.8034 -5.9509 2.0687 40 1 6.1628 -9.9238 1.7392 41 1 6.1849 -9.2442 0.2214 42 1 2.8495 -8.3284 1.3414 43 1 3.7555 -9.2336 0.1052 44 1 4.4298 -10.8961 1.8169 45 1 3.5239 -9.9910 3.0531 46 1 1.4292 -10.3379 1.7730 47 1 2.3346 -11.2432 0.5364 48 1 -0.6119 -13.3495 1.2023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329104820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:43 Heat of formation + Delta-G solvation = -13.669135 kcal Electronic energy + Delta-G solvation = -28246.781011 eV Core-core repulsion = 24144.715812 eV Total energy + Delta-G solvation = -4102.065200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.46066 -41.10490 -40.51963 -37.52655 -36.63703 -36.12013 -35.29408 -33.63217 -32.99985 -31.10654 -29.82816 -29.37812 -28.15217 -27.17219 -26.07089 -24.54705 -22.78832 -22.22886 -21.73886 -20.90759 -20.39514 -18.54905 -18.50110 -18.43764 -18.11826 -17.58613 -17.04404 -16.56766 -16.51964 -16.28892 -16.15821 -15.99685 -15.56940 -15.10700 -14.80619 -14.61384 -14.30502 -14.28233 -14.21875 -13.93901 -13.69580 -13.65565 -13.53408 -13.44817 -13.20895 -12.93179 -12.87786 -12.57590 -12.41940 -12.36602 -12.04636 -11.71156 -11.50524 -11.42913 -11.25729 -11.03692 -10.79592 -10.56776 -9.84951 -9.74362 -9.71145 -9.26605 -8.20693 -6.32354 0.70621 1.11219 1.32827 1.39779 1.41233 1.46669 1.52387 1.88625 2.12179 2.23186 2.40488 3.12614 3.35093 3.48914 3.64814 3.71851 3.93826 3.99102 4.05089 4.07373 4.30069 4.36989 4.38050 4.42530 4.46954 4.51910 4.65286 4.74088 4.78914 4.83193 4.87698 4.96601 4.98257 5.10950 5.17851 5.23424 5.42037 5.51541 5.72020 5.73865 5.84526 5.95792 6.03382 6.14176 6.22649 6.27848 6.49971 6.80892 6.86017 7.01379 7.06099 7.37455 8.91155 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.001961 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.634403 B =14278.469458 C =16006.020351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.619 5.619 3 C 0.064 3.936 4 C 0.485 3.515 5 O -0.573 6.573 6 C 0.120 3.880 7 N -0.361 5.361 8 C 0.084 3.916 9 C -0.298 4.298 10 C 0.276 3.724 11 N -0.632 5.632 12 C 0.533 3.467 13 O -0.533 6.533 14 C 0.095 3.905 15 H 0.129 0.871 16 N -0.827 5.827 17 C -0.138 4.138 18 C -0.093 4.093 19 C 0.021 3.979 20 C -0.540 4.540 21 H 0.066 0.934 22 C -0.006 4.006 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.260 1.260 28 N -0.332 5.332 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.178 0.822 37 H 0.229 0.771 38 H 0.158 0.842 39 H 0.423 0.577 40 H 0.361 0.639 41 H 0.348 0.652 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.065 0.935 46 H -0.012 1.012 47 H -0.015 1.015 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.021 34.769 -3.144 36.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.354 5.354 3 C -0.077 4.077 4 C 0.272 3.728 5 O -0.451 6.451 6 C -0.003 4.003 7 N -0.146 5.146 8 C -0.061 4.061 9 C -0.328 4.328 10 C 0.020 3.980 11 N -0.282 5.282 12 C 0.320 3.680 13 O -0.407 6.407 14 C -0.021 4.021 15 H 0.146 0.854 16 N -0.360 5.360 17 C -0.178 4.178 18 C -0.131 4.131 19 C -0.016 4.016 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.791 3.209 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.184 1.184 28 N -0.162 5.162 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.159 0.841 36 H 0.195 0.805 37 H 0.246 0.754 38 H 0.176 0.824 39 H 0.260 0.740 40 H 0.177 0.823 41 H 0.162 0.838 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.006 0.994 47 H 0.004 0.996 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.672 35.476 -2.822 36.879 hybrid contribution -1.456 -2.182 -0.233 2.633 sum 8.216 33.294 -3.055 34.429 Atomic orbital electron populations 1.21700 0.78945 1.03334 1.02039 1.47913 1.07618 1.06864 1.72966 1.22263 0.97991 0.83381 1.04107 1.21314 0.91286 0.83711 0.76503 1.90820 1.70798 1.33188 1.50258 1.21993 0.90410 0.78166 1.09723 1.47856 1.36123 1.09395 1.21190 1.23216 0.93372 0.93597 0.95918 1.21921 1.11028 0.98371 1.01515 1.19538 0.96873 0.87088 0.94514 1.42709 1.47619 1.06906 1.30944 1.21042 0.77521 0.85063 0.84344 1.90570 1.39746 1.83895 1.26487 1.21278 0.90455 0.89107 1.01211 0.85377 1.58692 1.40188 1.24340 1.12810 1.22274 0.97350 0.97902 1.00267 1.21429 0.98140 0.94411 0.99104 1.19025 0.93327 0.94412 0.94851 1.21736 1.07515 1.07540 1.21025 0.91561 1.26058 0.95593 1.02039 0.96651 1.70122 1.12279 1.39584 1.35735 0.85415 0.78729 0.78371 0.78344 1.19807 1.21061 1.18350 1.77368 1.25122 0.96826 1.16849 0.92780 0.87779 0.93464 0.90036 0.89148 0.88793 0.84108 0.80504 0.75443 0.82442 0.73984 0.82283 0.83835 0.91696 0.92941 0.91964 0.91596 0.99397 0.99624 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.44 127.77 1.33 2.31 16 2 N -0.62 -6.74 3.27 -871.89 -2.85 -9.60 16 3 C 0.06 -0.02 10.24 127.77 1.31 1.28 16 4 C 0.48 8.99 7.70 87.66 0.68 9.67 16 5 O -0.57 -18.52 15.28 -3.03 -0.05 -18.57 16 6 C 0.12 1.24 5.54 85.63 0.47 1.72 16 7 N -0.36 -7.71 3.40 -351.84 -1.20 -8.90 16 8 C 0.08 1.61 11.44 83.52 0.96 2.57 16 9 C -0.30 -8.46 9.61 22.11 0.21 -8.24 16 10 C 0.28 8.71 8.11 133.33 1.08 9.79 16 11 N -0.63 -18.58 5.45 -307.51 -1.68 -20.25 16 12 C 0.53 16.50 7.05 87.66 0.62 17.12 16 13 O -0.53 -18.98 13.38 -3.06 -0.04 -19.02 16 14 C 0.09 2.62 3.21 44.17 0.14 2.76 16 15 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 16 N -0.83 -22.25 8.94 -171.80 -1.54 -23.79 16 17 C -0.14 -4.60 4.84 30.59 0.15 -4.45 16 18 C -0.09 -3.60 4.92 30.59 0.15 -3.44 16 19 C 0.02 1.11 4.97 29.85 0.15 1.26 16 20 C -0.54 -30.77 9.11 25.60 0.23 -30.53 16 21 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 22 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 23 N -0.94 -58.51 13.29 21.45 0.28 -58.23 16 24 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 27 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 28 N -0.33 -10.20 11.66 -54.45 -0.63 -10.84 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16 31 H 0.05 0.86 7.42 -2.38 -0.02 0.85 16 32 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.09 -0.21 8.07 -2.39 -0.02 -0.23 16 34 H 0.09 -0.40 6.44 -2.39 -0.02 -0.41 16 35 H 0.14 0.67 7.40 -2.39 -0.02 0.66 16 36 H 0.18 -0.10 8.03 -2.39 -0.02 -0.12 16 37 H 0.23 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.16 4.90 5.92 -2.91 -0.02 4.88 16 39 H 0.42 10.69 8.82 -92.71 -0.82 9.88 16 40 H 0.36 8.82 7.55 -89.70 -0.68 8.14 16 41 H 0.35 9.81 8.58 -89.69 -0.77 9.04 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 2.24 6.87 -2.39 -0.02 2.22 16 45 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 46 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 47 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 48 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -92.65 400.58 1.01 -91.64 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -1.26 Total: 28.83 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 7.94 Total: 1.92 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -7.61 Total: -131.60 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.09 Total: -37.59 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -92.65 1.01 -91.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329104820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.972 kcal (2) G-P(sol) polarization free energy of solvation -92.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds