Wall clock time and date at job start Tue Mar 31 2020 21:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28711 * 126.04083 * 2 1 4 4 N 1.28503 * 110.64402 * 179.85141 * 3 2 1 5 5 C 1.33327 * 109.43978 * 0.40999 * 4 3 2 6 6 C 1.37007 * 106.36773 * 359.75923 * 5 4 3 7 7 C 1.47229 * 127.18723 * 180.02562 * 6 5 4 8 8 O 1.21616 * 120.00016 * 200.26443 * 7 6 5 9 9 N 1.34783 * 120.00145 * 20.27026 * 7 6 5 10 10 C 1.46924 * 120.62640 * 6.02176 * 9 7 6 11 11 C 1.53630 * 108.53999 * 126.37448 * 10 9 7 12 12 C 1.53035 * 109.24292 * 54.85524 * 11 10 9 13 13 O 1.42897 * 109.46149 * 178.49124 * 12 11 10 14 14 C 1.42897 * 114.00275 * 270.06660 * 13 12 11 15 15 C 1.53002 * 109.47453 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46908 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.46722 * 179.97438 * 16 15 14 18 18 C 1.36942 * 119.99981 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00019 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99846 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99971 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47518 * 89.99740 * 22 20 18 24 24 H 1.48502 * 109.46776 * 209.99657 * 22 20 18 25 25 H 1.48499 * 109.47175 * 329.99258 * 22 20 18 26 26 C 1.53051 * 109.53955 * 298.51181 * 12 11 10 27 27 C 1.46921 * 120.62880 * 186.30949 * 9 7 6 28 28 H 1.08998 * 109.47779 * 264.04526 * 1 2 3 29 29 H 1.09007 * 109.46659 * 144.04079 * 1 2 3 30 30 H 1.09001 * 109.46841 * 24.05012 * 1 2 3 31 31 H 1.07998 * 126.81513 * 179.75549 * 5 4 3 32 32 H 1.09000 * 109.58931 * 246.20405 * 10 9 7 33 33 H 1.08994 * 109.58880 * 6.63126 * 10 9 7 34 34 H 1.09003 * 109.63576 * 294.86404 * 11 10 9 35 35 H 1.08999 * 109.43232 * 174.72476 * 11 10 9 36 36 H 1.08999 * 109.45430 * 58.52589 * 12 11 10 37 37 H 1.09003 * 109.46986 * 300.00035 * 14 13 12 38 38 H 1.09003 * 109.46744 * 59.99648 * 14 13 12 39 39 H 1.09003 * 109.47091 * 300.00017 * 15 14 13 40 40 H 1.08994 * 109.47260 * 59.99837 * 15 14 13 41 41 H 1.08994 * 109.47095 * 299.99548 * 16 15 14 42 42 H 1.09001 * 109.46955 * 60.00309 * 16 15 14 43 43 H 0.96998 * 120.00362 * 359.97438 * 17 16 15 44 44 H 0.96999 * 119.99956 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.49507 * 301.41392 * 26 12 11 46 46 H 1.08991 * 109.52608 * 181.33395 * 26 12 11 47 47 H 1.08995 * 109.59244 * 353.36804 * 27 9 7 48 48 H 1.09005 * 109.58873 * 113.65694 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4612 0.6996 0.0031 5 6 3.5552 -0.6304 -0.0037 6 6 2.2712 -1.1082 -0.0058 7 6 1.8462 -2.5178 -0.0124 8 8 0.7247 -2.8131 -0.3785 9 7 2.7001 -3.4810 0.3875 10 6 4.0092 -3.1319 0.9559 11 6 4.1519 -3.8284 2.3177 12 6 3.9240 -5.3314 2.1418 13 8 4.0903 -5.9886 3.3998 14 6 5.4285 -6.4176 3.6591 15 6 5.4886 -7.1035 5.0254 16 6 6.9215 -7.5621 5.3032 17 7 6.9791 -8.2184 6.6118 18 6 8.1677 -8.7139 7.0775 19 1 9.0626 -8.6213 6.4800 20 6 8.2224 -9.3352 8.3176 21 7 9.3648 -9.8119 8.7650 22 14 6.6745 -9.4960 9.3508 23 1 5.9883 -10.7706 9.0195 24 1 7.0376 -9.4891 10.7907 25 1 5.7671 -8.3561 9.0636 26 6 2.5056 -5.5768 1.6220 27 6 2.3419 -4.8999 0.2575 28 1 -0.3634 -0.1066 1.0221 29 1 -0.3633 -0.8319 -0.6035 30 1 -0.3633 0.9385 -0.4188 31 1 4.4633 -1.2149 -0.0069 32 1 4.8001 -3.4685 0.2856 33 1 4.0741 -2.0519 1.0877 34 1 3.4144 -3.4276 3.0132 35 1 5.1541 -3.6558 2.7101 36 1 4.6460 -5.7269 1.4274 37 1 5.7414 -7.1192 2.8858 38 1 6.0937 -5.5540 3.6569 39 1 5.1758 -6.4015 5.7984 40 1 4.8234 -7.9669 5.0281 41 1 7.2346 -8.2640 4.5303 42 1 7.5864 -6.6984 5.3008 43 1 6.1755 -8.3012 7.1486 44 1 9.4029 -10.2464 9.6314 45 1 1.7836 -5.1595 2.3240 46 1 2.3355 -6.6484 1.5193 47 1 1.3065 -4.9868 -0.0717 48 1 2.9981 -5.3772 -0.4705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329779545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:40 Heat of formation + Delta-G solvation = 49.638433 kcal Electronic energy + Delta-G solvation = -28638.981518 eV Core-core repulsion = 24539.661541 eV Total energy + Delta-G solvation = -4099.319977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.90973 -40.72925 -38.89016 -37.11993 -35.45175 -35.11309 -33.45507 -32.46994 -31.74474 -31.04521 -30.07279 -28.63530 -26.32126 -25.18485 -24.38794 -23.64427 -22.77611 -22.16205 -21.45566 -20.98286 -20.03933 -18.17402 -17.75042 -17.53129 -17.32649 -16.76455 -16.70089 -15.94734 -15.74884 -15.13913 -15.06521 -14.73083 -14.52970 -14.33736 -14.05505 -13.92215 -13.76014 -13.57685 -13.18619 -13.06691 -12.87023 -12.84166 -12.51608 -12.24931 -11.81991 -11.71918 -11.67600 -11.56179 -11.15762 -10.98860 -10.84237 -10.81123 -10.71872 -10.69482 -10.60767 -10.14731 -10.02096 -9.61325 -9.61020 -9.38392 -8.91439 -7.25723 -5.78432 -3.14464 0.35558 1.46148 1.74139 2.28499 2.39098 3.36338 3.37573 3.40700 3.45139 3.55145 3.80592 4.09820 4.18930 4.26990 4.35112 4.45781 4.47814 4.58263 4.62312 4.69889 4.82624 4.86124 4.92558 4.96557 5.03921 5.12467 5.16146 5.24331 5.28308 5.34237 5.41613 5.48155 5.51390 5.65498 5.70133 5.77807 5.81880 5.85593 5.93276 5.94926 6.18821 6.56757 6.67112 6.71557 7.11600 7.30454 7.78970 7.97284 8.40531 9.19394 9.91833 10.11534 11.39796 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022965 B = 0.001725 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.945113 B =16224.773258 C =16604.410300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.254 5.254 3 N -0.056 5.056 4 N -0.270 5.270 5 C -0.010 4.010 6 C -0.070 4.070 7 C 0.599 3.401 8 O -0.535 6.535 9 N -0.593 5.593 10 C 0.078 3.922 11 C -0.158 4.158 12 C 0.090 3.910 13 O -0.380 6.380 14 C 0.067 3.933 15 C -0.129 4.129 16 C 0.161 3.839 17 N -0.756 5.756 18 C -0.247 4.247 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.132 4.132 27 C 0.118 3.882 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.211 0.789 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.695 18.109 -23.321 34.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.051 5.051 3 N -0.037 5.037 4 N -0.133 5.133 5 C -0.170 4.170 6 C -0.204 4.204 7 C 0.385 3.615 8 O -0.412 6.412 9 N -0.326 5.326 10 C -0.045 4.045 11 C -0.196 4.196 12 C 0.031 3.969 13 O -0.300 6.300 14 C -0.009 4.009 15 C -0.167 4.167 16 C 0.033 3.967 17 N -0.402 5.402 18 C -0.376 4.376 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.581 5.581 22 Si 0.716 3.284 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.170 4.170 27 C -0.004 4.004 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.228 0.772 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.120 0.880 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.208 19.400 -23.365 35.934 hybrid contribution -0.818 -1.281 0.804 1.720 sum -20.026 18.119 -22.561 35.190 Atomic orbital electron populations 1.22605 0.71260 1.06974 1.05936 1.47684 1.09967 1.03337 1.44075 1.78318 0.96750 1.11405 1.17262 1.74970 1.09111 1.12444 1.16729 1.24374 0.97024 0.91977 1.03640 1.21880 0.91701 0.90784 1.16040 1.16675 0.84452 0.82628 0.77748 1.90803 1.19163 1.82609 1.48589 1.47797 1.17564 1.06334 1.60918 1.22733 0.84056 1.02667 0.95001 1.22530 1.03960 0.96371 0.96744 1.22002 0.96964 0.91348 0.86539 1.87942 1.29241 1.76488 1.36279 1.22525 0.82902 0.97705 0.97798 1.21718 0.99179 1.00626 0.95149 1.20488 0.92361 0.95371 0.88459 1.42686 1.08814 1.70901 1.17805 1.19060 0.87533 1.29879 1.01158 0.89184 1.24685 0.96543 1.00470 0.97487 1.69706 1.23912 1.44065 1.20465 0.86525 0.83714 0.77945 0.80231 1.21014 1.21668 1.20290 1.21995 0.96755 1.02058 0.96205 1.21728 1.03394 0.78112 0.97167 0.88558 0.86544 0.87490 0.77247 0.89839 0.87262 0.90400 0.89632 0.91746 0.93083 0.93168 0.91264 0.91223 0.95437 0.95500 0.80567 0.93027 0.90452 0.89359 0.87988 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 11.01 59.85 0.66 0.99 16 2 N -0.25 -2.06 3.79 -64.12 -0.24 -2.31 16 3 N -0.06 -0.56 13.14 60.35 0.79 0.23 16 4 N -0.27 -2.74 12.35 30.47 0.38 -2.36 16 5 C -0.01 -0.07 9.79 -17.35 -0.17 -0.24 16 6 C -0.07 -0.56 6.65 -82.33 -0.55 -1.10 16 7 C 0.60 4.91 7.62 -12.61 -0.10 4.81 16 8 O -0.53 -5.51 14.54 5.26 0.08 -5.43 16 9 N -0.59 -3.80 2.97 -173.85 -0.52 -4.32 16 10 C 0.08 0.37 5.29 -3.48 -0.02 0.35 16 11 C -0.16 -1.04 5.71 -26.39 -0.15 -1.19 16 12 C 0.09 0.71 2.57 -26.69 -0.07 0.64 16 13 O -0.38 -4.37 9.99 -35.23 -0.35 -4.73 16 14 C 0.07 0.79 5.75 37.16 0.21 1.00 16 15 C -0.13 -1.94 5.70 -26.73 -0.15 -2.09 16 16 C 0.16 3.03 6.26 -4.04 -0.03 3.00 16 17 N -0.76 -18.17 5.41 -59.91 -0.32 -18.49 16 18 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 22 Si 0.89 22.22 27.74 -169.99 -4.71 17.51 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 26 C -0.13 -0.92 5.73 -26.60 -0.15 -1.07 16 27 C 0.12 0.69 6.44 -3.71 -0.02 0.67 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.12 0.57 6.56 -51.93 -0.34 0.23 16 30 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.21 0.82 5.70 -52.49 -0.30 0.52 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.11 0.47 3.58 -51.93 -0.19 0.28 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.54 7.84 -51.93 -0.41 0.13 16 36 H 0.06 0.43 7.79 -51.93 -0.40 0.03 16 37 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 38 H 0.05 0.53 7.84 -51.93 -0.41 0.13 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.36 8.49 5.53 -40.82 -0.23 8.26 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.68 7.00 -51.93 -0.36 0.31 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -36.21 384.94 -6.41 -42.62 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.29 Total: 1.53 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -0.79 Total: -1.43 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.86 Total: -55.87 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.28 Total: -10.16 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.21 -6.41 -42.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329779545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.254 kcal (2) G-P(sol) polarization free energy of solvation -36.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds