Wall clock time and date at job start Tue Mar 31 2020 21:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28711 * 126.04083 * 2 1 4 4 N 1.28503 * 110.64402 * 179.85141 * 3 2 1 5 5 C 1.33327 * 109.43978 * 0.40999 * 4 3 2 6 6 C 1.37007 * 106.36773 * 359.75923 * 5 4 3 7 7 C 1.47229 * 127.18723 * 180.02562 * 6 5 4 8 8 O 1.21616 * 120.00016 * 200.26443 * 7 6 5 9 9 N 1.34783 * 120.00145 * 20.27026 * 7 6 5 10 10 C 1.46924 * 120.62640 * 6.02176 * 9 7 6 11 11 C 1.53630 * 108.53999 * 126.37448 * 10 9 7 12 12 C 1.53035 * 109.24292 * 54.85524 * 11 10 9 13 13 O 1.42897 * 109.46149 * 178.49124 * 12 11 10 14 14 C 1.42897 * 114.00275 * 270.06660 * 13 12 11 15 15 C 1.53002 * 109.47453 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46908 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.46722 * 179.97438 * 16 15 14 18 18 C 1.36942 * 119.99981 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00019 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99846 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99971 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47518 * 89.99740 * 22 20 18 24 24 H 1.48502 * 109.46776 * 209.99657 * 22 20 18 25 25 H 1.48499 * 109.47175 * 329.99258 * 22 20 18 26 26 C 1.53051 * 109.53955 * 298.51181 * 12 11 10 27 27 C 1.46921 * 120.62880 * 186.30949 * 9 7 6 28 28 H 1.08998 * 109.47779 * 264.04526 * 1 2 3 29 29 H 1.09007 * 109.46659 * 144.04079 * 1 2 3 30 30 H 1.09001 * 109.46841 * 24.05012 * 1 2 3 31 31 H 1.07998 * 126.81513 * 179.75549 * 5 4 3 32 32 H 1.09000 * 109.58931 * 246.20405 * 10 9 7 33 33 H 1.08994 * 109.58880 * 6.63126 * 10 9 7 34 34 H 1.09003 * 109.63576 * 294.86404 * 11 10 9 35 35 H 1.08999 * 109.43232 * 174.72476 * 11 10 9 36 36 H 1.08999 * 109.45430 * 58.52589 * 12 11 10 37 37 H 1.09003 * 109.46986 * 300.00035 * 14 13 12 38 38 H 1.09003 * 109.46744 * 59.99648 * 14 13 12 39 39 H 1.09003 * 109.47091 * 300.00017 * 15 14 13 40 40 H 1.08994 * 109.47260 * 59.99837 * 15 14 13 41 41 H 1.08994 * 109.47095 * 299.99548 * 16 15 14 42 42 H 1.09001 * 109.46955 * 60.00309 * 16 15 14 43 43 H 0.96998 * 120.00362 * 359.97438 * 17 16 15 44 44 H 0.96999 * 119.99956 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.49507 * 301.41392 * 26 12 11 46 46 H 1.08991 * 109.52608 * 181.33395 * 26 12 11 47 47 H 1.08995 * 109.59244 * 353.36804 * 27 9 7 48 48 H 1.09005 * 109.58873 * 113.65694 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4612 0.6996 0.0031 5 6 3.5552 -0.6304 -0.0037 6 6 2.2712 -1.1082 -0.0058 7 6 1.8462 -2.5178 -0.0124 8 8 0.7247 -2.8131 -0.3785 9 7 2.7001 -3.4810 0.3875 10 6 4.0092 -3.1319 0.9559 11 6 4.1519 -3.8284 2.3177 12 6 3.9240 -5.3314 2.1418 13 8 4.0903 -5.9886 3.3998 14 6 5.4285 -6.4176 3.6591 15 6 5.4886 -7.1035 5.0254 16 6 6.9215 -7.5621 5.3032 17 7 6.9791 -8.2184 6.6118 18 6 8.1677 -8.7139 7.0775 19 1 9.0626 -8.6213 6.4800 20 6 8.2224 -9.3352 8.3176 21 7 9.3648 -9.8119 8.7650 22 14 6.6745 -9.4960 9.3508 23 1 5.9883 -10.7706 9.0195 24 1 7.0376 -9.4891 10.7907 25 1 5.7671 -8.3561 9.0636 26 6 2.5056 -5.5768 1.6220 27 6 2.3419 -4.8999 0.2575 28 1 -0.3634 -0.1066 1.0221 29 1 -0.3633 -0.8319 -0.6035 30 1 -0.3633 0.9385 -0.4188 31 1 4.4633 -1.2149 -0.0069 32 1 4.8001 -3.4685 0.2856 33 1 4.0741 -2.0519 1.0877 34 1 3.4144 -3.4276 3.0132 35 1 5.1541 -3.6558 2.7101 36 1 4.6460 -5.7269 1.4274 37 1 5.7414 -7.1192 2.8858 38 1 6.0937 -5.5540 3.6569 39 1 5.1758 -6.4015 5.7984 40 1 4.8234 -7.9669 5.0281 41 1 7.2346 -8.2640 4.5303 42 1 7.5864 -6.6984 5.3008 43 1 6.1755 -8.3012 7.1486 44 1 9.4029 -10.2464 9.6314 45 1 1.7836 -5.1595 2.3240 46 1 2.3355 -6.6484 1.5193 47 1 1.3065 -4.9868 -0.0717 48 1 2.9981 -5.3772 -0.4705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329779545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:38 Heat of formation + Delta-G solvation = 22.936065 kcal Electronic energy + Delta-G solvation = -28640.139420 eV Core-core repulsion = 24539.661541 eV Total energy + Delta-G solvation = -4100.477879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.50706 -41.29626 -39.61133 -37.90343 -36.99611 -35.71727 -34.43849 -33.78440 -32.67068 -31.77489 -31.43568 -29.11086 -27.29473 -26.33805 -24.91839 -24.34613 -23.82323 -23.25889 -22.57077 -21.86419 -20.59695 -19.62646 -18.71614 -18.30455 -17.90775 -17.57076 -17.27238 -16.84372 -16.61998 -16.31779 -15.78717 -15.59248 -15.49168 -15.40618 -15.18794 -14.79087 -14.65601 -14.37148 -14.08435 -13.91205 -13.82711 -13.65610 -13.52523 -13.10698 -12.94718 -12.75395 -12.49301 -12.45145 -12.28833 -12.27727 -12.06802 -11.93851 -11.81626 -11.75623 -11.46769 -11.40889 -11.25066 -10.98161 -10.64853 -10.33294 -9.89610 -9.31596 -8.03943 -5.38072 -0.22899 0.95657 1.12622 1.38339 1.41281 1.48799 1.75616 1.84478 2.47827 2.59735 3.02391 3.27487 3.29540 3.61918 3.66008 3.70700 3.80938 3.84024 3.98857 4.10390 4.10921 4.15487 4.27266 4.29001 4.34714 4.39792 4.48643 4.52403 4.57700 4.61951 4.72371 4.74763 4.77703 4.79186 4.83392 4.83841 4.95619 5.13545 5.22664 5.23836 5.31673 5.32431 5.37258 5.74331 6.04259 6.20027 6.35874 6.73359 7.06530 7.17022 7.82913 8.01144 9.17231 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022965 B = 0.001725 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.945113 B =16224.773258 C =16604.410300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.253 5.253 3 N -0.079 5.079 4 N -0.300 5.300 5 C -0.001 4.001 6 C -0.079 4.079 7 C 0.599 3.401 8 O -0.562 6.562 9 N -0.589 5.589 10 C 0.079 3.921 11 C -0.154 4.154 12 C 0.084 3.916 13 O -0.401 6.401 14 C 0.075 3.925 15 C -0.118 4.118 16 C 0.156 3.844 17 N -0.762 5.762 18 C -0.239 4.239 19 H 0.059 0.941 20 C -0.065 4.065 21 N -0.982 5.982 22 Si 0.956 3.044 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.253 1.253 26 C -0.126 4.126 27 C 0.121 3.879 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.243 0.757 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.366 0.634 44 H 0.259 0.741 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.788 18.502 -24.460 36.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.050 5.050 3 N -0.060 5.060 4 N -0.162 5.162 5 C -0.161 4.161 6 C -0.214 4.214 7 C 0.385 3.615 8 O -0.441 6.441 9 N -0.320 5.320 10 C -0.042 4.042 11 C -0.193 4.193 12 C 0.026 3.974 13 O -0.321 6.321 14 C -0.002 4.002 15 C -0.156 4.156 16 C 0.030 3.970 17 N -0.408 5.408 18 C -0.370 4.370 19 H 0.077 0.923 20 C -0.256 4.256 21 N -0.633 5.633 22 Si 0.783 3.217 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.178 1.178 26 C -0.165 4.165 27 C -0.001 4.001 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.144 0.856 31 H 0.259 0.741 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.199 0.801 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.322 19.832 -24.544 37.533 hybrid contribution -0.452 -1.412 1.082 1.836 sum -20.774 18.420 -23.462 36.350 Atomic orbital electron populations 1.22848 0.69752 1.07900 1.06821 1.47980 1.10946 1.03104 1.42991 1.78267 0.97113 1.12180 1.18439 1.74934 1.09404 1.13933 1.17925 1.24919 0.97917 0.91204 1.02081 1.22030 0.92095 0.90774 1.16522 1.16723 0.84271 0.82854 0.77656 1.90790 1.20292 1.82946 1.50074 1.47885 1.17846 1.06243 1.60064 1.22880 0.83917 1.02852 0.94537 1.22484 1.03744 0.95604 0.97436 1.22245 0.97749 0.91833 0.85554 1.87903 1.28868 1.77057 1.38270 1.22358 0.83567 0.98298 0.95964 1.21535 0.96158 1.00632 0.97305 1.20666 0.95172 0.95041 0.86085 1.42749 1.07325 1.71050 1.19691 1.19070 0.88226 1.28960 1.00716 0.92267 1.25541 1.00061 1.00870 0.99142 1.69885 1.26577 1.45742 1.21046 0.85387 0.79760 0.78817 0.77703 1.20288 1.22101 1.17776 1.21939 0.95932 1.02300 0.96299 1.21762 1.03585 0.77791 0.96922 0.87366 0.86891 0.85588 0.74150 0.86699 0.86788 0.92357 0.88887 0.89696 0.91745 0.91839 0.91828 0.91557 0.95063 0.95209 0.80123 0.93268 0.92396 0.88970 0.88936 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 11.01 127.77 1.41 1.97 16 2 N -0.25 -3.94 3.79 -356.77 -1.35 -5.30 16 3 N -0.08 -1.55 13.14 37.02 0.49 -1.07 16 4 N -0.30 -5.83 12.35 -57.50 -0.71 -6.54 16 5 C 0.00 -0.01 9.79 84.18 0.82 0.81 16 6 C -0.08 -1.17 6.65 40.40 0.27 -0.90 16 7 C 0.60 9.01 7.62 86.60 0.66 9.67 16 8 O -0.56 -11.22 14.54 -4.08 -0.06 -11.28 16 9 N -0.59 -6.19 2.97 -822.17 -2.44 -8.63 16 10 C 0.08 0.49 5.29 86.51 0.46 0.95 16 11 C -0.15 -1.63 5.71 30.82 0.18 -1.46 16 12 C 0.08 1.08 2.57 30.62 0.08 1.16 16 13 O -0.40 -8.23 9.99 -148.98 -1.49 -9.72 16 14 C 0.07 1.53 5.75 71.98 0.41 1.95 16 15 C -0.12 -3.30 5.70 30.59 0.17 -3.13 16 16 C 0.16 5.64 6.26 86.38 0.54 6.18 16 17 N -0.76 -35.69 5.41 -343.45 -1.86 -37.55 16 18 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 19 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 20 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 21 N -0.98 -62.99 13.97 21.65 0.30 -62.68 16 22 Si 0.96 45.57 27.74 68.60 1.90 47.47 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 25 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 26 C -0.13 -1.52 5.73 30.68 0.18 -1.34 16 27 C 0.12 1.14 6.44 86.37 0.56 1.70 16 28 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 1.08 6.56 -2.38 -0.02 1.07 16 30 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.24 1.13 5.70 -2.91 -0.02 1.11 16 32 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.11 0.63 3.58 -2.39 -0.01 0.62 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.87 7.84 -2.39 -0.02 0.86 16 36 H 0.09 0.78 7.79 -2.39 -0.02 0.76 16 37 H 0.06 1.15 8.08 -2.39 -0.02 1.14 16 38 H 0.06 1.13 7.84 -2.39 -0.02 1.11 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.37 16.39 5.53 -92.71 -0.51 15.88 16 44 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.09 1.11 7.00 -2.39 -0.02 1.09 16 48 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 Total: -1.00 -79.41 384.94 2.27 -77.13 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.41 Total: 16.78 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 7.08 Total: 1.38 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.57 Total: -121.76 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.55 Total: -21.00 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Total: -79.41 2.27 -77.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329779545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.069 kcal (2) G-P(sol) polarization free energy of solvation -79.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds