Wall clock time and date at job start Tue Mar 31 2020 21:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00202 * 2 1 4 4 C 1.52998 * 109.47467 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47029 * 180.02562 * 4 3 2 6 6 N 1.29086 * 125.97791 * 270.02109 * 5 4 3 7 7 N 1.29035 * 110.26186 * 180.09939 * 6 5 4 8 8 C 1.32808 * 108.58443 * 0.02562 * 7 6 5 9 9 C 1.34494 * 125.98271 * 89.99629 * 5 4 3 10 10 C 1.50497 * 129.01366 * 359.74457 * 9 5 4 11 11 C 1.53449 * 108.75074 * 162.28321 * 10 9 5 12 12 N 1.47046 * 109.21576 * 45.11514 * 11 10 9 13 13 C 1.34771 * 120.78018 * 115.71776 * 12 11 10 14 14 O 1.21586 * 120.00377 * 354.75388 * 13 12 11 15 15 N 1.34779 * 119.99797 * 174.75606 * 13 12 11 16 16 C 1.46504 * 119.99832 * 184.96551 * 15 13 12 17 17 C 1.52999 * 109.46957 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.46999 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.46758 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00363 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99789 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00173 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99708 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47182 * 90.00258 * 23 21 19 25 25 H 1.48497 * 109.46656 * 210.00000 * 23 21 19 26 26 H 1.48498 * 109.47235 * 329.99666 * 23 21 19 27 27 C 1.47476 * 118.43468 * 295.69764 * 12 11 10 28 28 H 1.08996 * 109.47344 * 60.00524 * 1 2 3 29 29 H 1.09001 * 109.46675 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47114 * 300.00094 * 1 2 3 31 31 H 1.08997 * 109.47272 * 59.99074 * 3 2 1 32 32 H 1.09004 * 109.46527 * 299.99888 * 3 2 1 33 33 H 1.08992 * 109.47317 * 59.99373 * 4 3 2 34 34 H 1.08999 * 109.46590 * 299.99266 * 4 3 2 35 35 H 1.08990 * 109.59112 * 42.49761 * 10 9 5 36 36 H 1.09000 * 109.58698 * 282.05714 * 10 9 5 37 37 H 1.09000 * 109.51159 * 285.19350 * 11 10 9 38 38 H 1.09002 * 109.55771 * 165.06549 * 11 10 9 39 39 H 0.96997 * 119.99978 * 4.97046 * 15 13 12 40 40 H 1.08998 * 109.47360 * 300.00608 * 16 15 13 41 41 H 1.09001 * 109.46584 * 60.00538 * 16 15 13 42 42 H 1.09006 * 109.47180 * 300.00445 * 17 16 15 43 43 H 1.08995 * 109.47037 * 60.00296 * 17 16 15 44 44 H 1.08990 * 109.47215 * 299.99761 * 18 17 16 45 45 H 1.09001 * 109.46750 * 60.00312 * 18 17 16 46 46 H 0.97000 * 120.00410 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.91409 * 284.79560 * 27 12 11 48 48 H 1.09008 * 109.97622 * 163.67242 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1313 2.5231 0.0000 6 7 4.4390 3.2167 -1.0443 7 7 4.9463 4.3503 -0.6943 8 6 4.9761 4.4091 0.6322 9 6 4.4530 3.2443 1.0886 10 6 4.2902 2.8896 2.5421 11 6 5.1876 3.8117 3.3783 12 7 5.0407 5.1942 2.8996 13 6 4.5183 6.1479 3.6958 14 8 4.0744 5.8519 4.7883 15 7 4.4879 7.4299 3.2809 16 6 4.0210 8.4822 4.1870 17 6 4.0857 9.8345 3.4743 18 6 3.5986 10.9336 4.4209 19 6 3.6618 12.2655 3.7186 20 1 4.0144 12.3225 2.6994 21 6 3.2703 13.4116 4.3778 22 7 3.3259 14.5740 3.7653 23 14 2.6624 13.3132 6.1414 24 1 3.8106 13.4690 7.0702 25 1 1.6771 14.3968 6.3864 26 1 2.0163 11.9958 6.3696 27 6 5.4789 5.5127 1.5279 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6438 -0.8907 34 1 3.8574 0.6437 0.8892 35 1 4.5840 1.8520 2.7002 36 1 3.2499 3.0262 2.8373 37 1 6.2268 3.4993 3.2756 38 1 4.8925 3.7558 4.4262 39 1 4.7750 7.6558 2.3823 40 1 2.9923 8.2767 4.4831 41 1 4.6559 8.5070 5.0726 42 1 5.1143 10.0402 3.1779 43 1 3.4505 9.8093 2.5889 44 1 2.5702 10.7281 4.7175 45 1 4.2342 10.9586 5.3060 46 1 3.0502 15.3802 4.2288 47 1 6.5672 5.5574 1.4868 48 1 5.0562 6.4673 1.2142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330288851.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:45 Heat of formation + Delta-G solvation = 30.189980 kcal Electronic energy + Delta-G solvation = -28729.739347 eV Core-core repulsion = 24629.576021 eV Total energy + Delta-G solvation = -4100.163326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.86509 -40.28970 -38.74744 -37.09075 -35.74101 -35.44937 -33.52763 -32.55268 -31.30409 -31.17755 -30.19792 -27.38688 -27.08420 -26.25342 -24.64571 -24.22875 -22.72900 -21.67943 -21.32411 -20.55368 -19.40448 -18.32480 -17.74793 -17.19062 -16.91543 -16.76849 -16.63069 -16.20539 -15.88856 -15.47801 -14.99708 -14.79983 -14.60659 -14.47964 -14.23863 -13.94400 -13.65722 -13.63017 -13.12096 -12.88362 -12.75169 -12.65952 -12.41997 -12.08484 -12.04715 -11.99718 -11.89061 -11.77614 -11.16456 -11.03987 -10.88950 -10.55165 -10.46595 -10.32188 -10.02356 -9.82918 -9.68224 -9.33366 -9.21586 -9.17151 -8.71663 -8.54452 -6.05029 -4.03696 1.05009 1.63067 2.09789 2.40753 3.07330 3.15631 3.32042 3.39585 3.43822 3.67914 3.79437 3.90068 4.07377 4.11812 4.26747 4.40883 4.45353 4.55609 4.67167 4.71829 4.72301 4.79324 4.87941 4.95574 5.03910 5.07209 5.26013 5.28986 5.31369 5.39179 5.44237 5.53907 5.65241 5.68860 6.03009 6.05963 6.08393 6.30062 6.35399 6.46917 6.64075 6.80823 6.83711 7.24188 7.37580 7.76331 7.88868 8.07478 8.50932 8.55125 8.99125 9.57109 11.08175 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.001963 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.852250 B =14259.058719 C =14429.384518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.048 3.952 4 C 0.117 3.883 5 N -0.282 5.282 6 N -0.088 5.088 7 N -0.246 5.246 8 C -0.035 4.035 9 C -0.003 4.003 10 C -0.064 4.064 11 C 0.136 3.864 12 N -0.635 5.635 13 C 0.711 3.289 14 O -0.587 6.587 15 N -0.739 5.739 16 C 0.132 3.868 17 C -0.114 4.114 18 C -0.011 4.011 19 C -0.522 4.522 20 H 0.072 0.928 21 C 0.066 3.934 22 N -0.903 5.903 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.264 1.264 27 C 0.202 3.798 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.396 0.604 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.019 0.981 45 H 0.015 0.985 46 H 0.263 0.737 47 H 0.094 0.906 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 -33.385 -6.203 33.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.075 5.075 6 N -0.066 5.066 7 N -0.111 5.111 8 C -0.176 4.176 9 C -0.137 4.137 10 C -0.105 4.105 11 C 0.012 3.988 12 N -0.374 5.374 13 C 0.412 3.588 14 O -0.465 6.465 15 N -0.395 5.395 16 C 0.008 3.992 17 C -0.152 4.152 18 C -0.049 4.049 19 C -0.560 4.560 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.542 5.542 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.189 1.189 27 C 0.076 3.924 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.232 0.768 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.033 0.967 46 H 0.073 0.927 47 H 0.112 0.888 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.458 -33.524 -6.917 34.233 hybrid contribution -0.571 0.247 1.298 1.439 sum -0.113 -33.278 -5.619 33.749 Atomic orbital electron populations 1.22836 0.79428 1.03452 1.00672 1.87781 1.20961 1.26078 1.95625 1.22679 0.91943 0.86141 1.02268 1.21764 0.92875 0.78423 1.07358 1.46831 1.40870 1.15119 1.04722 1.78651 1.16888 1.00021 1.11037 1.74846 1.14609 1.10482 1.11140 1.21807 1.06706 0.97324 0.91745 1.21760 1.05826 0.93845 0.92242 1.20680 1.02824 1.00931 0.86030 1.21407 0.98935 0.78872 0.99592 1.47340 1.67328 1.09316 1.13428 1.15785 0.78462 0.80823 0.83688 1.90912 1.52788 1.81217 1.21608 1.45524 1.70374 1.05474 1.18143 1.21555 0.99490 0.85791 0.92314 1.21719 1.01731 0.92051 0.99698 1.19498 0.96203 0.94065 0.95086 1.21101 1.43958 0.89714 1.01196 0.90978 1.25033 0.95095 0.95333 0.98063 1.69909 1.48423 0.98346 1.37490 0.86776 0.79084 0.78067 0.85374 1.20246 1.21413 1.18886 1.19770 0.99791 0.94439 0.78369 0.93521 0.88832 0.93504 0.92127 0.91733 0.86334 0.86780 0.88857 0.89024 0.90529 0.87173 0.76834 0.91856 0.91831 0.92037 0.92102 0.96306 0.96693 0.92715 0.88814 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.38 10.70 -35.23 -0.38 -2.75 16 3 C 0.05 0.27 6.26 37.16 0.23 0.50 16 4 C 0.12 0.61 6.61 -4.04 -0.03 0.58 16 5 N -0.28 -2.43 3.33 -57.25 -0.19 -2.62 16 6 N -0.09 -1.03 13.19 60.35 0.80 -0.24 16 7 N -0.25 -3.11 12.40 33.19 0.41 -2.70 16 8 C -0.04 -0.37 7.21 -83.08 -0.60 -0.97 16 9 C 0.00 -0.03 6.80 -82.47 -0.56 -0.59 16 10 C -0.06 -0.40 6.13 -27.75 -0.17 -0.57 16 11 C 0.14 1.06 6.36 -3.51 -0.02 1.03 16 12 N -0.64 -6.58 2.95 -179.24 -0.53 -7.11 16 13 C 0.71 9.98 8.30 -86.92 -0.72 9.26 16 14 O -0.59 -10.29 15.79 5.29 0.08 -10.20 16 15 N -0.74 -10.12 5.45 -65.22 -0.36 -10.47 16 16 C 0.13 2.15 5.68 -4.04 -0.02 2.13 16 17 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 18 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 19 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 20 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 22 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 23 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 27 C 0.20 1.84 6.62 -4.63 -0.03 1.81 16 28 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.34 7.64 -51.93 -0.40 -0.06 16 35 H 0.09 0.32 7.79 -51.93 -0.40 -0.09 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.95 7.02 -51.93 -0.36 0.59 16 39 H 0.40 4.52 6.11 -40.82 -0.25 4.27 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 45 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.10 0.89 6.00 -51.92 -0.31 0.58 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -36.29 392.88 -7.20 -43.50 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.58 Total: -2.01 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.49 Total: -1.35 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.91 Total: -50.12 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.29 Total: -12.96 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.29 -7.20 -43.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330288851.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.686 kcal (2) G-P(sol) polarization free energy of solvation -36.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds