Wall clock time and date at job start Tue Mar 31 2020 21:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00202 * 2 1 4 4 C 1.52998 * 109.47467 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47029 * 180.02562 * 4 3 2 6 6 N 1.29086 * 125.97791 * 270.02109 * 5 4 3 7 7 N 1.29035 * 110.26186 * 180.09939 * 6 5 4 8 8 C 1.32808 * 108.58443 * 0.02562 * 7 6 5 9 9 C 1.34494 * 125.98271 * 89.99629 * 5 4 3 10 10 C 1.50497 * 129.01366 * 359.74457 * 9 5 4 11 11 C 1.53449 * 108.75074 * 162.28321 * 10 9 5 12 12 N 1.47046 * 109.21576 * 45.11514 * 11 10 9 13 13 C 1.34771 * 120.78018 * 115.71776 * 12 11 10 14 14 O 1.21586 * 120.00377 * 354.75388 * 13 12 11 15 15 N 1.34779 * 119.99797 * 174.75606 * 13 12 11 16 16 C 1.46504 * 119.99832 * 184.96551 * 15 13 12 17 17 C 1.52999 * 109.46957 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.46999 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.46758 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00363 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99789 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00173 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99708 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47182 * 90.00258 * 23 21 19 25 25 H 1.48497 * 109.46656 * 210.00000 * 23 21 19 26 26 H 1.48498 * 109.47235 * 329.99666 * 23 21 19 27 27 C 1.47476 * 118.43468 * 295.69764 * 12 11 10 28 28 H 1.08996 * 109.47344 * 60.00524 * 1 2 3 29 29 H 1.09001 * 109.46675 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47114 * 300.00094 * 1 2 3 31 31 H 1.08997 * 109.47272 * 59.99074 * 3 2 1 32 32 H 1.09004 * 109.46527 * 299.99888 * 3 2 1 33 33 H 1.08992 * 109.47317 * 59.99373 * 4 3 2 34 34 H 1.08999 * 109.46590 * 299.99266 * 4 3 2 35 35 H 1.08990 * 109.59112 * 42.49761 * 10 9 5 36 36 H 1.09000 * 109.58698 * 282.05714 * 10 9 5 37 37 H 1.09000 * 109.51159 * 285.19350 * 11 10 9 38 38 H 1.09002 * 109.55771 * 165.06549 * 11 10 9 39 39 H 0.96997 * 119.99978 * 4.97046 * 15 13 12 40 40 H 1.08998 * 109.47360 * 300.00608 * 16 15 13 41 41 H 1.09001 * 109.46584 * 60.00538 * 16 15 13 42 42 H 1.09006 * 109.47180 * 300.00445 * 17 16 15 43 43 H 1.08995 * 109.47037 * 60.00296 * 17 16 15 44 44 H 1.08990 * 109.47215 * 299.99761 * 18 17 16 45 45 H 1.09001 * 109.46750 * 60.00312 * 18 17 16 46 46 H 0.97000 * 120.00410 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.91409 * 284.79560 * 27 12 11 48 48 H 1.09008 * 109.97622 * 163.67242 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1313 2.5231 0.0000 6 7 4.4390 3.2167 -1.0443 7 7 4.9463 4.3503 -0.6943 8 6 4.9761 4.4091 0.6322 9 6 4.4530 3.2443 1.0886 10 6 4.2902 2.8896 2.5421 11 6 5.1876 3.8117 3.3783 12 7 5.0407 5.1942 2.8996 13 6 4.5183 6.1479 3.6958 14 8 4.0744 5.8519 4.7883 15 7 4.4879 7.4299 3.2809 16 6 4.0210 8.4822 4.1870 17 6 4.0857 9.8345 3.4743 18 6 3.5986 10.9336 4.4209 19 6 3.6618 12.2655 3.7186 20 1 4.0144 12.3225 2.6994 21 6 3.2703 13.4116 4.3778 22 7 3.3259 14.5740 3.7653 23 14 2.6624 13.3132 6.1414 24 1 3.8106 13.4690 7.0702 25 1 1.6771 14.3968 6.3864 26 1 2.0163 11.9958 6.3696 27 6 5.4789 5.5127 1.5279 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6438 -0.8907 34 1 3.8574 0.6437 0.8892 35 1 4.5840 1.8520 2.7002 36 1 3.2499 3.0262 2.8373 37 1 6.2268 3.4993 3.2756 38 1 4.8925 3.7558 4.4262 39 1 4.7750 7.6558 2.3823 40 1 2.9923 8.2767 4.4831 41 1 4.6559 8.5070 5.0726 42 1 5.1143 10.0402 3.1779 43 1 3.4505 9.8093 2.5889 44 1 2.5702 10.7281 4.7175 45 1 4.2342 10.9586 5.3060 46 1 3.0502 15.3802 4.2288 47 1 6.5672 5.5574 1.4868 48 1 5.0562 6.4673 1.2142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330288851.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:43 Heat of formation + Delta-G solvation = 3.522475 kcal Electronic energy + Delta-G solvation = -28730.895736 eV Core-core repulsion = 24629.576021 eV Total energy + Delta-G solvation = -4101.319715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.58525 -41.29811 -39.17273 -37.99771 -36.90521 -36.28113 -35.19561 -33.77634 -32.71720 -31.88568 -30.83285 -28.95060 -27.48455 -27.16844 -25.37688 -24.97525 -24.12249 -22.47015 -22.13504 -22.06954 -20.43862 -19.21251 -18.78806 -18.46404 -17.88300 -17.44686 -17.20065 -17.12005 -16.75861 -16.30975 -16.12659 -15.84773 -15.58828 -15.50392 -15.12777 -14.92740 -14.75000 -14.57949 -14.29793 -13.85157 -13.79686 -13.51172 -13.48333 -13.24992 -12.93819 -12.70372 -12.66489 -12.63580 -12.41106 -12.39947 -11.89917 -11.87434 -11.76078 -11.57213 -11.33279 -11.29941 -11.17180 -10.87488 -10.74221 -10.26381 -10.02572 -9.67817 -8.27311 -6.31236 0.36748 1.08103 1.31052 1.38816 1.40369 1.50823 1.52502 2.06099 2.38354 2.66806 2.80035 3.08408 3.10227 3.39764 3.50454 3.65249 3.67337 3.95743 4.03501 4.11698 4.19539 4.23527 4.25666 4.29732 4.36469 4.45359 4.47690 4.50936 4.54991 4.61497 4.72068 4.77802 4.80628 4.86216 4.93658 4.95265 4.98831 5.06217 5.34916 5.42975 5.45512 5.54212 5.59137 5.67412 5.84174 5.90591 6.29775 6.76829 6.86715 7.31427 7.33424 7.48733 8.89101 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.001963 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.852250 B =14259.058719 C =14429.384518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.053 3.947 4 C 0.113 3.887 5 N -0.273 5.273 6 N -0.117 5.117 7 N -0.279 5.279 8 C -0.052 4.052 9 C 0.005 3.995 10 C -0.057 4.057 11 C 0.130 3.870 12 N -0.627 5.627 13 C 0.710 3.290 14 O -0.624 6.624 15 N -0.736 5.736 16 C 0.147 3.853 17 C -0.101 4.101 18 C -0.011 4.011 19 C -0.530 4.530 20 H 0.036 0.964 21 C 0.002 3.998 22 N -0.951 5.951 23 Si 0.949 3.051 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.246 1.246 27 C 0.203 3.797 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.407 0.593 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.021 0.979 45 H 0.023 0.977 46 H 0.266 0.734 47 H 0.113 0.887 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -36.139 -4.705 36.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.026 4.026 4 C -0.007 4.007 5 N -0.066 5.066 6 N -0.094 5.094 7 N -0.144 5.144 8 C -0.194 4.194 9 C -0.130 4.130 10 C -0.097 4.097 11 C 0.007 3.993 12 N -0.365 5.365 13 C 0.411 3.589 14 O -0.505 6.505 15 N -0.393 5.393 16 C 0.022 3.978 17 C -0.139 4.139 18 C -0.049 4.049 19 C -0.568 4.568 20 H 0.054 0.946 21 C -0.194 4.194 22 N -0.592 5.592 23 Si 0.772 3.228 24 H -0.191 1.191 25 H -0.212 1.212 26 H -0.170 1.170 27 C 0.078 3.922 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.245 0.755 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.039 0.961 45 H 0.041 0.959 46 H 0.074 0.926 47 H 0.131 0.869 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.562 -36.334 -5.481 36.750 hybrid contribution -0.597 1.038 0.725 1.400 sum -0.035 -35.296 -4.756 35.615 Atomic orbital electron populations 1.22999 0.78548 1.04530 1.00934 1.87759 1.21978 1.26109 1.95653 1.22590 0.92287 0.86025 1.01659 1.22075 0.92410 0.77012 1.09252 1.47051 1.39805 1.15692 1.04057 1.78580 1.18145 1.00397 1.12273 1.74787 1.15810 1.11349 1.12441 1.22050 1.07554 0.98399 0.91378 1.22114 1.04471 0.93160 0.93248 1.20755 1.02477 1.02671 0.83759 1.21671 1.00741 0.77547 0.99370 1.47346 1.66053 1.09716 1.13374 1.15860 0.78349 0.81100 0.83565 1.90887 1.54455 1.81826 1.23318 1.45302 1.70403 1.05208 1.18341 1.21169 0.99133 0.85207 0.92252 1.21488 1.01703 0.91977 0.98761 1.19459 0.96687 0.92965 0.95823 1.21479 1.43020 0.92251 1.00095 0.94572 1.26016 0.95486 0.94866 1.03066 1.70062 1.50124 0.99307 1.39696 0.85676 0.78858 0.78830 0.79414 1.19120 1.21194 1.16978 1.19874 1.00858 0.94111 0.77370 0.93475 0.87420 0.93061 0.92016 0.93133 0.85655 0.83768 0.85006 0.89189 0.88139 0.87909 0.75534 0.92671 0.92018 0.91610 0.92158 0.96079 0.95890 0.92565 0.86882 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.22 10.70 -148.98 -1.59 -5.81 16 3 C 0.05 0.52 6.26 71.98 0.45 0.97 16 4 C 0.11 0.91 6.61 86.38 0.57 1.48 16 5 N -0.27 -4.24 3.33 -335.04 -1.12 -5.36 16 6 N -0.12 -2.67 13.19 37.02 0.49 -2.18 16 7 N -0.28 -6.99 12.40 -48.90 -0.61 -7.60 16 8 C -0.05 -1.04 7.21 41.82 0.30 -0.74 16 9 C 0.01 0.08 6.80 41.48 0.28 0.36 16 10 C -0.06 -0.53 6.13 29.93 0.18 -0.34 16 11 C 0.13 1.65 6.36 86.43 0.55 2.20 16 12 N -0.63 -11.76 2.95 -839.25 -2.47 -14.23 16 13 C 0.71 18.88 8.30 179.06 1.49 20.36 16 14 O -0.62 -21.11 15.79 -3.99 -0.06 -21.17 16 15 N -0.74 -19.14 5.45 -478.53 -2.61 -21.75 16 16 C 0.15 4.59 5.68 86.38 0.49 5.08 16 17 C -0.10 -3.65 5.27 30.59 0.16 -3.49 16 18 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 19 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 20 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 21 C 0.00 0.14 5.47 84.66 0.46 0.60 16 22 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 23 Si 0.95 44.32 27.47 68.60 1.88 46.21 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 27 C 0.20 3.37 6.62 85.47 0.57 3.94 16 28 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.14 0.31 7.64 -2.39 -0.02 0.29 16 35 H 0.13 0.26 7.79 -2.39 -0.02 0.24 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 1.55 7.02 -2.39 -0.02 1.53 16 39 H 0.41 8.74 6.11 -92.71 -0.57 8.18 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 45 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 46 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 47 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.10 1.66 6.00 -2.38 -0.01 1.64 16 Total: -1.00 -79.97 392.88 1.68 -78.29 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.35 Total: 11.51 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 7.12 Total: 1.51 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -6.02 Total: -110.53 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -1.66 Total: -26.99 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.21 kcal Total: -79.97 1.68 -78.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330288851.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.811 kcal (2) G-P(sol) polarization free energy of solvation -79.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds