Wall clock time and date at job start Tue Mar 31 2020 20:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46501 * 119.99977 * 2 1 4 4 C 1.52993 * 109.47297 * 89.99565 * 3 2 1 5 5 H 1.09002 * 109.47349 * 305.00529 * 4 3 2 6 6 O 1.42901 * 109.47116 * 65.00001 * 4 3 2 7 7 C 1.53001 * 109.47435 * 185.00069 * 4 3 2 8 8 N 1.46498 * 109.47219 * 180.02562 * 7 4 3 9 9 C 1.36939 * 119.99821 * 179.97438 * 8 7 4 10 10 H 1.07999 * 120.00002 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99996 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00000 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00061 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.46838 * 90.00023 * 13 11 9 15 15 H 1.48495 * 109.47080 * 210.00229 * 13 11 9 16 16 H 1.48499 * 109.47005 * 330.00354 * 13 11 9 17 17 C 1.34780 * 120.00154 * 179.97438 * 2 1 3 18 18 O 1.21277 * 119.99861 * 184.57879 * 17 2 1 19 19 C 1.50699 * 119.99692 * 4.57895 * 17 2 1 20 20 H 1.09006 * 109.45726 * 46.77272 * 19 17 2 21 21 C 1.53102 * 109.46132 * 286.80271 * 19 17 2 22 22 C 1.53428 * 109.58028 * 169.90761 * 21 19 17 23 23 C 1.50600 * 108.32966 * 49.81791 * 22 21 19 24 24 N 1.32908 * 129.15950 * 163.49003 * 23 22 21 25 25 N 1.29021 * 108.63373 * 180.13984 * 24 23 22 26 26 N 1.29107 * 110.26114 * 359.96985 * 25 24 23 27 27 C 1.46492 * 126.00910 * 179.91283 * 26 25 24 28 28 C 1.34398 * 107.98179 * 359.93789 * 26 25 24 29 29 C 1.50537 * 129.25137 * 180.23176 * 28 26 25 30 30 H 1.08998 * 109.46993 * 90.60771 * 1 2 3 31 31 H 1.08999 * 109.46982 * 210.60355 * 1 2 3 32 32 H 1.08993 * 109.47040 * 330.60817 * 1 2 3 33 33 H 1.09009 * 109.46887 * 329.99703 * 3 2 1 34 34 H 1.08994 * 109.47197 * 210.00055 * 3 2 1 35 35 H 0.96701 * 113.99521 * 60.00199 * 6 4 3 36 36 H 1.09002 * 109.47228 * 300.00534 * 7 4 3 37 37 H 1.09000 * 109.46953 * 60.00411 * 7 4 3 38 38 H 0.96993 * 120.00256 * 0.02562 * 8 7 4 39 39 H 0.96992 * 120.00190 * 179.97438 * 12 11 9 40 40 H 1.09002 * 109.45568 * 289.94390 * 21 19 17 41 41 H 1.09003 * 109.45379 * 49.89582 * 21 19 17 42 42 H 1.08996 * 109.69370 * 169.53199 * 22 21 19 43 43 H 1.09003 * 109.68591 * 290.11055 * 22 21 19 44 44 H 1.09001 * 109.46973 * 90.02887 * 27 26 25 45 45 H 1.09001 * 109.47676 * 210.02382 * 27 26 25 46 46 H 1.09000 * 109.47453 * 330.03311 * 27 26 25 47 47 H 1.08997 * 109.69291 * 43.76617 * 29 28 26 48 48 H 1.09003 * 109.68994 * 283.18467 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4424 5 1 1.5062 1.7550 1.9815 6 8 3.3209 0.7726 2.0814 7 6 3.1060 3.0939 1.4443 8 7 3.3507 3.5166 2.8255 9 6 3.9327 4.7303 3.0771 10 1 4.2111 5.3760 2.2574 11 6 4.1650 5.1306 4.3859 12 7 4.7240 6.2974 4.6278 13 14 3.6843 4.0134 5.8036 14 1 4.8224 3.1198 6.1374 15 1 3.3386 4.8386 6.9888 16 1 2.5098 3.1937 5.4115 17 6 2.1390 -1.1672 0.0005 18 8 3.3489 -1.1688 0.0844 19 6 1.3891 -2.4702 -0.1031 20 1 0.6515 -2.4021 -0.9028 21 6 0.6789 -2.7569 1.2226 22 6 -0.2821 -3.9398 1.0459 23 6 0.4688 -5.0653 0.3845 24 7 0.1501 -6.3530 0.3027 25 7 1.0776 -6.9666 -0.3513 26 7 1.9989 -6.1349 -0.7069 27 6 3.2103 -6.4630 -1.4625 28 6 1.6514 -4.9154 -0.2616 29 6 2.3752 -3.6042 -0.4130 30 1 -0.3633 -0.0109 -1.0276 31 1 -0.3633 -0.8845 0.5232 32 1 -0.3633 0.8953 0.5043 33 1 1.6085 2.0284 -0.5139 34 1 3.1500 1.1384 -0.5138 35 1 4.1837 0.6812 1.6543 36 1 4.0524 3.0494 0.9052 37 1 2.4436 3.8093 0.9570 38 1 3.1010 2.9365 3.5616 39 1 4.8860 6.5773 5.5422 40 1 1.4185 -3.0007 1.9854 41 1 0.1165 -1.8756 1.5311 42 1 -0.6477 -4.2646 2.0199 43 1 -1.1219 -3.6401 0.4189 44 1 3.0105 -6.3657 -2.5296 45 1 4.0114 -5.7802 -1.1792 46 1 3.5105 -7.4872 -1.2411 47 1 2.7422 -3.5030 -1.4343 48 1 3.2121 -3.5640 0.2842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332560709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:13 Heat of formation + Delta-G solvation = 32.760714 kcal Electronic energy + Delta-G solvation = -29813.799914 eV Core-core repulsion = 25713.748063 eV Total energy + Delta-G solvation = -4100.051850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.74541 -40.53798 -37.82381 -36.76377 -35.49469 -35.24151 -34.12010 -31.55405 -31.02285 -31.00518 -29.56780 -28.24316 -27.17627 -26.09839 -24.51744 -23.47773 -22.25745 -21.76665 -21.24914 -20.35389 -19.21937 -17.79466 -17.69686 -17.39223 -16.94329 -16.61903 -15.89848 -15.44621 -15.29709 -14.84203 -14.53937 -14.47086 -14.28244 -14.18624 -13.79570 -13.72412 -13.55119 -13.27855 -13.24430 -13.09380 -12.83953 -12.56105 -12.44926 -12.27214 -12.17792 -11.86806 -11.64392 -11.45994 -11.27672 -11.22336 -10.88551 -10.85646 -10.81050 -10.31179 -10.18809 -9.97874 -9.73478 -9.57225 -9.17569 -8.91452 -8.64168 -7.23500 -5.76898 -3.12317 1.21137 1.94806 2.21406 2.44270 2.75900 3.41315 3.46981 3.48476 3.73370 3.94596 4.17519 4.26661 4.38265 4.44068 4.48536 4.61271 4.64464 4.71004 4.76028 4.77654 4.79708 4.87980 5.01308 5.06105 5.10346 5.19547 5.21337 5.32823 5.43549 5.47675 5.50046 5.54279 5.59377 5.64325 5.64913 5.80268 5.83692 5.89295 5.92601 6.19988 6.29362 6.42383 6.61279 7.17343 7.96628 7.99681 8.08937 8.18145 8.42129 9.22237 9.94589 10.14867 11.41262 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.002307 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.020518 B =12135.364460 C =12309.126573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.608 5.608 3 C 0.086 3.914 4 C 0.082 3.918 5 H 0.094 0.906 6 O -0.550 6.550 7 C 0.130 3.870 8 N -0.749 5.749 9 C -0.246 4.246 10 H 0.089 0.911 11 C 0.005 3.995 12 N -0.934 5.934 13 Si 0.888 3.112 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.277 1.277 17 C 0.526 3.474 18 O -0.529 6.529 19 C -0.098 4.098 20 H 0.100 0.900 21 C -0.118 4.118 22 C -0.030 4.030 23 C -0.021 4.021 24 N -0.261 5.261 25 N -0.099 5.099 26 N -0.284 5.284 27 C 0.079 3.921 28 C -0.014 4.014 29 C -0.027 4.027 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.376 0.624 36 H 0.029 0.971 37 H 0.032 0.968 38 H 0.366 0.634 39 H 0.260 0.740 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.668 -23.501 -16.140 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.341 5.341 3 C -0.038 4.038 4 C 0.022 3.978 5 H 0.112 0.888 6 O -0.355 6.355 7 C 0.001 3.999 8 N -0.395 5.395 9 C -0.376 4.376 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.582 5.582 13 Si 0.718 3.282 14 H -0.210 1.210 15 H -0.218 1.218 16 H -0.203 1.203 17 C 0.313 3.687 18 O -0.404 6.404 19 C -0.120 4.120 20 H 0.118 0.882 21 C -0.156 4.156 22 C -0.069 4.069 23 C -0.161 4.161 24 N -0.126 5.126 25 N -0.077 5.077 26 N -0.076 5.076 27 C -0.063 4.063 28 C -0.148 4.148 29 C -0.066 4.066 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.224 0.776 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.200 0.800 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.103 0.897 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.870 -24.868 -15.804 31.073 hybrid contribution 0.581 0.479 0.506 0.907 sum -9.289 -24.389 -15.298 30.251 Atomic orbital electron populations 1.22136 0.79589 1.04269 1.02067 1.47671 1.06848 1.05906 1.73665 1.22256 0.98342 0.84673 0.98480 1.22527 0.94461 0.89055 0.91795 0.88786 1.86512 1.29406 1.62536 1.57039 1.21211 0.97617 0.92425 0.88648 1.42569 1.75207 1.20378 1.01362 1.19044 1.31882 0.93087 0.93595 0.89342 1.24671 1.00692 0.96769 0.96996 1.69704 1.48620 1.20351 1.19525 0.86489 0.78573 0.80233 0.82871 1.21016 1.21847 1.20294 1.20223 0.87767 0.84783 0.75949 1.90674 1.14073 1.86992 1.48700 1.21284 0.98095 0.92136 1.00528 0.88232 1.21822 0.99116 0.98696 0.95962 1.19955 0.96563 0.89550 1.00855 1.21680 0.95924 0.93956 1.04563 1.74801 1.18949 1.05027 1.13800 1.78591 0.95794 1.17818 1.15449 1.46829 1.18055 1.05850 1.36837 1.22308 0.82663 1.04892 0.96403 1.21807 0.99300 0.89437 1.04302 1.19945 0.97206 0.85686 1.03779 0.92455 0.89965 0.90509 0.89458 0.89407 0.77582 0.95345 0.94987 0.80027 0.93050 0.90161 0.89075 0.89131 0.89627 0.88927 0.88066 0.87854 0.89733 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 9.84 59.85 0.59 0.96 16 2 N -0.61 -5.72 2.86 -181.57 -0.52 -6.24 16 3 C 0.09 0.94 5.10 -4.04 -0.02 0.92 16 4 C 0.08 1.20 3.30 -26.73 -0.09 1.12 16 5 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 6 O -0.55 -9.15 11.82 -47.86 -0.57 -9.72 16 7 C 0.13 2.38 5.92 -4.04 -0.02 2.35 16 8 N -0.75 -17.97 5.30 -59.91 -0.32 -18.29 16 9 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 10 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 11 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 12 N -0.93 -29.59 13.97 55.49 0.78 -28.81 16 13 Si 0.89 22.77 27.74 -169.99 -4.71 18.05 16 14 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 16 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 17 C 0.53 5.45 6.61 -10.98 -0.07 5.38 16 18 O -0.53 -7.20 14.08 -7.07 -0.10 -7.30 16 19 C -0.10 -0.73 1.70 -91.49 -0.16 -0.89 16 20 H 0.10 0.58 7.73 -51.93 -0.40 0.18 16 21 C -0.12 -0.84 4.76 -26.46 -0.13 -0.97 16 22 C -0.03 -0.22 6.30 -27.71 -0.17 -0.39 16 23 C -0.02 -0.21 7.11 -83.12 -0.59 -0.81 16 24 N -0.26 -3.33 12.40 33.16 0.41 -2.92 16 25 N -0.10 -1.18 13.19 60.35 0.80 -0.39 16 26 N -0.28 -2.54 3.73 -64.01 -0.24 -2.78 16 27 C 0.08 0.32 11.27 59.84 0.67 0.99 16 28 C -0.01 -0.13 6.76 -82.50 -0.56 -0.69 16 29 C -0.03 -0.20 4.83 -27.74 -0.13 -0.34 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.39 4.20 -51.93 -0.22 0.17 16 32 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.09 0.78 8.07 -51.92 -0.42 0.36 16 34 H 0.09 1.03 7.49 -51.93 -0.39 0.64 16 35 H 0.38 5.88 8.64 45.56 0.39 6.28 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.37 8.88 5.40 -40.82 -0.22 8.66 16 39 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 40 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.09 0.56 5.40 -51.93 -0.28 0.28 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 0.25 7.96 -51.93 -0.41 -0.16 16 46 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.10 0.90 7.59 -51.93 -0.39 0.51 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -38.21 383.60 -6.21 -44.41 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.58 Total: 7.71 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.93 Total: 0.49 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.91 Total: -59.42 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.67 Total: -17.02 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.21 -6.21 -44.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332560709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.174 kcal (2) G-P(sol) polarization free energy of solvation -38.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds