Wall clock time and date at job start Tue Mar 31 2020 20:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46501 * 119.99977 * 2 1 4 4 C 1.52993 * 109.47297 * 89.99565 * 3 2 1 5 5 H 1.09002 * 109.47349 * 305.00529 * 4 3 2 6 6 O 1.42901 * 109.47116 * 65.00001 * 4 3 2 7 7 C 1.53001 * 109.47435 * 185.00069 * 4 3 2 8 8 N 1.46498 * 109.47219 * 180.02562 * 7 4 3 9 9 C 1.36939 * 119.99821 * 179.97438 * 8 7 4 10 10 H 1.07999 * 120.00002 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99996 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00000 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00061 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.46838 * 90.00023 * 13 11 9 15 15 H 1.48495 * 109.47080 * 210.00229 * 13 11 9 16 16 H 1.48499 * 109.47005 * 330.00354 * 13 11 9 17 17 C 1.34780 * 120.00154 * 179.97438 * 2 1 3 18 18 O 1.21277 * 119.99861 * 184.57879 * 17 2 1 19 19 C 1.50699 * 119.99692 * 4.57895 * 17 2 1 20 20 H 1.09006 * 109.45726 * 46.77272 * 19 17 2 21 21 C 1.53102 * 109.46132 * 286.80271 * 19 17 2 22 22 C 1.53428 * 109.58028 * 169.90761 * 21 19 17 23 23 C 1.50600 * 108.32966 * 49.81791 * 22 21 19 24 24 N 1.32908 * 129.15950 * 163.49003 * 23 22 21 25 25 N 1.29021 * 108.63373 * 180.13984 * 24 23 22 26 26 N 1.29107 * 110.26114 * 359.96985 * 25 24 23 27 27 C 1.46492 * 126.00910 * 179.91283 * 26 25 24 28 28 C 1.34398 * 107.98179 * 359.93789 * 26 25 24 29 29 C 1.50537 * 129.25137 * 180.23176 * 28 26 25 30 30 H 1.08998 * 109.46993 * 90.60771 * 1 2 3 31 31 H 1.08999 * 109.46982 * 210.60355 * 1 2 3 32 32 H 1.08993 * 109.47040 * 330.60817 * 1 2 3 33 33 H 1.09009 * 109.46887 * 329.99703 * 3 2 1 34 34 H 1.08994 * 109.47197 * 210.00055 * 3 2 1 35 35 H 0.96701 * 113.99521 * 60.00199 * 6 4 3 36 36 H 1.09002 * 109.47228 * 300.00534 * 7 4 3 37 37 H 1.09000 * 109.46953 * 60.00411 * 7 4 3 38 38 H 0.96993 * 120.00256 * 0.02562 * 8 7 4 39 39 H 0.96992 * 120.00190 * 179.97438 * 12 11 9 40 40 H 1.09002 * 109.45568 * 289.94390 * 21 19 17 41 41 H 1.09003 * 109.45379 * 49.89582 * 21 19 17 42 42 H 1.08996 * 109.69370 * 169.53199 * 22 21 19 43 43 H 1.09003 * 109.68591 * 290.11055 * 22 21 19 44 44 H 1.09001 * 109.46973 * 90.02887 * 27 26 25 45 45 H 1.09001 * 109.47676 * 210.02382 * 27 26 25 46 46 H 1.09000 * 109.47453 * 330.03311 * 27 26 25 47 47 H 1.08997 * 109.69291 * 43.76617 * 29 28 26 48 48 H 1.09003 * 109.68994 * 283.18467 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4424 5 1 1.5062 1.7550 1.9815 6 8 3.3209 0.7726 2.0814 7 6 3.1060 3.0939 1.4443 8 7 3.3507 3.5166 2.8255 9 6 3.9327 4.7303 3.0771 10 1 4.2111 5.3760 2.2574 11 6 4.1650 5.1306 4.3859 12 7 4.7240 6.2974 4.6278 13 14 3.6843 4.0134 5.8036 14 1 4.8224 3.1198 6.1374 15 1 3.3386 4.8386 6.9888 16 1 2.5098 3.1937 5.4115 17 6 2.1390 -1.1672 0.0005 18 8 3.3489 -1.1688 0.0844 19 6 1.3891 -2.4702 -0.1031 20 1 0.6515 -2.4021 -0.9028 21 6 0.6789 -2.7569 1.2226 22 6 -0.2821 -3.9398 1.0459 23 6 0.4688 -5.0653 0.3845 24 7 0.1501 -6.3530 0.3027 25 7 1.0776 -6.9666 -0.3513 26 7 1.9989 -6.1349 -0.7069 27 6 3.2103 -6.4630 -1.4625 28 6 1.6514 -4.9154 -0.2616 29 6 2.3752 -3.6042 -0.4130 30 1 -0.3633 -0.0109 -1.0276 31 1 -0.3633 -0.8845 0.5232 32 1 -0.3633 0.8953 0.5043 33 1 1.6085 2.0284 -0.5139 34 1 3.1500 1.1384 -0.5138 35 1 4.1837 0.6812 1.6543 36 1 4.0524 3.0494 0.9052 37 1 2.4436 3.8093 0.9570 38 1 3.1010 2.9365 3.5616 39 1 4.8860 6.5773 5.5422 40 1 1.4185 -3.0007 1.9854 41 1 0.1165 -1.8756 1.5311 42 1 -0.6477 -4.2646 2.0199 43 1 -1.1219 -3.6401 0.4189 44 1 3.0105 -6.3657 -2.5296 45 1 4.0114 -5.7802 -1.1792 46 1 3.5105 -7.4872 -1.2411 47 1 2.7422 -3.5030 -1.4343 48 1 3.2121 -3.5640 0.2842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332560709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:12 Heat of formation + Delta-G solvation = 2.963284 kcal Electronic energy + Delta-G solvation = -29815.092027 eV Core-core repulsion = 25713.748063 eV Total energy + Delta-G solvation = -4101.343964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.44727 -41.30003 -38.94004 -37.54954 -36.45125 -35.88037 -35.86098 -33.46416 -31.95865 -31.57497 -30.72946 -28.75023 -28.04562 -27.13465 -25.47597 -24.36849 -23.65880 -22.66424 -22.39644 -21.04900 -19.92282 -19.79150 -18.46488 -18.00195 -17.77798 -17.55150 -16.71557 -16.58997 -16.43035 -16.26240 -15.58501 -15.44378 -15.12500 -14.93113 -14.80686 -14.70536 -14.48091 -14.20103 -14.11839 -13.82086 -13.70562 -13.66709 -13.31179 -13.25596 -13.10362 -12.87777 -12.83180 -12.61306 -12.51217 -12.24285 -12.05809 -11.95468 -11.85311 -11.79498 -11.53533 -11.10148 -11.01626 -10.95819 -10.61860 -9.87935 -9.47045 -9.30624 -8.04389 -5.36840 0.52243 1.37580 1.40909 1.42238 1.46290 1.47731 1.68832 2.05870 2.47258 3.12141 3.26828 3.33064 3.44298 3.69275 3.72904 3.74415 3.78615 3.87307 4.03335 4.10783 4.18402 4.24118 4.27939 4.28382 4.38796 4.43445 4.49642 4.55618 4.58494 4.64560 4.73230 4.84918 4.86672 4.91264 4.93302 4.93849 5.03294 5.14697 5.22014 5.25877 5.36438 5.55477 5.60849 5.73635 6.19917 6.46997 6.83478 7.07421 7.26425 7.43619 7.84630 8.02397 9.16961 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.002307 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.020518 B =12135.364460 C =12309.126573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.607 5.607 3 C 0.095 3.905 4 C 0.093 3.907 5 H 0.097 0.903 6 O -0.565 6.565 7 C 0.124 3.876 8 N -0.754 5.754 9 C -0.234 4.234 10 H 0.059 0.941 11 C -0.063 4.063 12 N -0.982 5.982 13 Si 0.957 3.043 14 H -0.284 1.284 15 H -0.293 1.293 16 H -0.255 1.255 17 C 0.521 3.479 18 O -0.567 6.567 19 C -0.090 4.090 20 H 0.125 0.875 21 C -0.111 4.111 22 C -0.026 4.026 23 C -0.033 4.033 24 N -0.299 5.299 25 N -0.130 5.130 26 N -0.278 5.278 27 C 0.066 3.934 28 C -0.014 4.014 29 C -0.020 4.020 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.378 0.622 36 H 0.027 0.973 37 H 0.044 0.956 38 H 0.366 0.634 39 H 0.258 0.742 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 -24.683 -17.203 32.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.339 5.339 3 C -0.029 4.029 4 C 0.033 3.967 5 H 0.115 0.885 6 O -0.371 6.371 7 C -0.003 4.003 8 N -0.400 5.400 9 C -0.365 4.365 10 H 0.077 0.923 11 C -0.255 4.255 12 N -0.633 5.633 13 Si 0.785 3.215 14 H -0.211 1.211 15 H -0.220 1.220 16 H -0.180 1.180 17 C 0.309 3.691 18 O -0.446 6.446 19 C -0.112 4.112 20 H 0.143 0.857 21 C -0.149 4.149 22 C -0.064 4.064 23 C -0.174 4.174 24 N -0.163 5.163 25 N -0.108 5.108 26 N -0.071 5.071 27 C -0.074 4.074 28 C -0.149 4.149 29 C -0.059 4.059 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.227 0.773 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.200 0.800 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.130 0.870 47 H 0.118 0.882 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.647 -26.106 -16.921 33.219 hybrid contribution 1.179 0.880 0.707 1.633 sum -10.467 -25.226 -16.213 31.761 Atomic orbital electron populations 1.22416 0.77221 1.05224 1.03900 1.47755 1.08270 1.04934 1.72900 1.22040 0.98974 0.86191 0.95707 1.22471 0.93521 0.86451 0.94273 0.88474 1.86487 1.29862 1.62818 1.57918 1.21465 0.98104 0.95088 0.85672 1.42612 1.74783 1.18826 1.03805 1.19064 1.30539 0.94103 0.92756 0.92256 1.25477 1.01677 0.98428 0.99925 1.69871 1.50857 1.22598 1.19971 0.85382 0.78791 0.78253 0.79121 1.21079 1.22009 1.18002 1.20707 0.87472 0.85774 0.75115 1.90662 1.15863 1.87587 1.50464 1.21266 0.98113 0.90312 1.01495 0.85682 1.21761 0.98693 0.99200 0.95200 1.20044 0.96836 0.88446 1.01122 1.22238 0.96683 0.93862 1.04638 1.74744 1.20067 1.06371 1.15074 1.78504 0.96772 1.18736 1.16738 1.47206 1.18327 1.05516 1.36001 1.22734 0.81481 1.05988 0.97159 1.22024 0.99066 0.89897 1.03900 1.19912 0.96690 0.85058 1.04285 0.90188 0.88555 0.90088 0.86893 0.90307 0.77347 0.95544 0.93808 0.80024 0.93308 0.92224 0.87598 0.89080 0.87350 0.86863 0.86402 0.86960 0.88248 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.42 9.84 127.77 1.26 1.67 16 2 N -0.61 -9.45 2.86 -846.75 -2.42 -11.87 16 3 C 0.09 1.81 5.10 86.38 0.44 2.26 16 4 C 0.09 2.52 3.30 30.59 0.10 2.62 16 5 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16 6 O -0.56 -17.96 11.82 -136.91 -1.62 -19.57 16 7 C 0.12 4.36 5.92 86.38 0.51 4.87 16 8 N -0.75 -35.36 5.30 -343.45 -1.82 -37.18 16 9 C -0.23 -13.42 10.47 84.03 0.88 -12.54 16 10 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 11 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 12 N -0.98 -63.44 13.97 21.65 0.30 -63.14 16 13 Si 0.96 46.98 27.74 68.60 1.90 48.88 16 14 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 15 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 16 H -0.26 -11.47 6.52 99.48 0.65 -10.83 16 17 C 0.52 9.54 6.61 87.66 0.58 10.12 16 18 O -0.57 -14.71 14.08 9.05 0.13 -14.59 16 19 C -0.09 -1.09 1.70 -11.36 -0.02 -1.11 16 20 H 0.13 0.92 7.73 -2.38 -0.02 0.90 16 21 C -0.11 -1.30 4.76 30.77 0.15 -1.16 16 22 C -0.03 -0.31 6.30 29.96 0.19 -0.12 16 23 C -0.03 -0.63 7.11 41.75 0.30 -0.33 16 24 N -0.30 -7.55 12.40 -48.99 -0.61 -8.16 16 25 N -0.13 -3.09 13.19 37.02 0.49 -2.60 16 26 N -0.28 -4.69 3.73 -356.43 -1.33 -6.01 16 27 C 0.07 0.42 11.27 127.77 1.44 1.86 16 28 C -0.01 -0.23 6.76 41.50 0.28 0.06 16 29 C -0.02 -0.27 4.83 29.94 0.14 -0.12 16 30 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.10 0.48 4.20 -2.39 -0.01 0.47 16 32 H 0.08 0.61 8.07 -2.39 -0.02 0.59 16 33 H 0.11 1.60 8.07 -2.38 -0.02 1.58 16 34 H 0.08 1.70 7.49 -2.39 -0.02 1.68 16 35 H 0.38 11.56 8.64 -74.06 -0.64 10.92 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.37 17.06 5.40 -92.71 -0.50 16.56 16 39 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 41 H 0.11 0.93 5.40 -2.39 -0.01 0.92 16 42 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.12 0.37 7.96 -2.39 -0.02 0.35 16 46 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 48 H 0.09 1.48 7.59 -2.39 -0.02 1.46 16 Total: -1.00 -84.64 383.60 1.54 -83.10 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.20 Total: 26.40 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 6.71 Total: 4.74 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -5.38 Total: -128.96 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -1.49 Total: -34.16 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.90 Total: 48.88 kcal Total: -84.64 1.54 -83.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332560709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.061 kcal (2) G-P(sol) polarization free energy of solvation -84.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds