Wall clock time and date at job start Tue Mar 31 2020 20:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99684 * 2 1 4 4 C 1.52994 * 109.47211 * 270.00047 * 3 2 1 5 5 H 1.08995 * 109.47674 * 60.00219 * 4 3 2 6 6 O 1.42900 * 109.47343 * 300.00174 * 4 3 2 7 7 C 1.52998 * 109.47095 * 180.02562 * 4 3 2 8 8 N 1.46506 * 109.47237 * 184.99775 * 7 4 3 9 9 C 1.36939 * 120.00073 * 179.72302 * 8 7 4 10 10 H 1.08004 * 119.99859 * 0.02562 * 9 8 7 11 11 C 1.38805 * 119.99849 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00455 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00168 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46615 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47374 * 119.99782 * 13 11 9 16 16 H 1.48495 * 109.47187 * 240.00172 * 13 11 9 17 17 C 1.34775 * 119.99928 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00019 * 179.97438 * 17 2 1 19 19 C 1.50705 * 120.00171 * 0.02562 * 17 2 1 20 20 H 1.09002 * 109.45205 * 299.96303 * 19 17 2 21 21 C 1.53110 * 109.45849 * 59.91390 * 19 17 2 22 22 C 1.53423 * 109.57733 * 190.09328 * 21 19 17 23 23 C 1.50603 * 108.33556 * 310.18907 * 22 21 19 24 24 N 1.32905 * 129.16058 * 196.61174 * 23 22 21 25 25 N 1.29012 * 108.63510 * 179.77245 * 24 23 22 26 26 N 1.29106 * 110.25949 * 0.02562 * 25 24 23 27 27 C 1.46506 * 126.01001 * 180.09904 * 26 25 24 28 28 C 1.34394 * 107.98782 * 0.07044 * 26 25 24 29 29 C 1.50540 * 129.26078 * 179.84779 * 28 26 25 30 30 H 1.09002 * 109.47261 * 90.00151 * 1 2 3 31 31 H 1.09004 * 109.47356 * 209.99684 * 1 2 3 32 32 H 1.09000 * 109.47560 * 329.99694 * 1 2 3 33 33 H 1.09003 * 109.46485 * 149.99943 * 3 2 1 34 34 H 1.09000 * 109.47038 * 30.00294 * 3 2 1 35 35 H 0.96701 * 113.99949 * 300.00823 * 6 4 3 36 36 H 1.09001 * 109.47671 * 65.00115 * 7 4 3 37 37 H 1.08998 * 109.47454 * 305.00112 * 7 4 3 38 38 H 0.97005 * 119.99811 * 0.02562 * 8 7 4 39 39 H 0.97000 * 120.00679 * 179.97438 * 12 11 9 40 40 H 1.09003 * 109.45060 * 310.12460 * 21 19 17 41 41 H 1.08998 * 109.45502 * 70.06020 * 21 19 17 42 42 H 1.08995 * 109.69411 * 190.47831 * 22 21 19 43 43 H 1.09003 * 109.71909 * 69.91369 * 22 21 19 44 44 H 1.08993 * 109.47706 * 269.96313 * 27 26 25 45 45 H 1.09008 * 109.46855 * 29.96252 * 27 26 25 46 46 H 1.09001 * 109.47024 * 149.95785 * 27 26 25 47 47 H 1.09004 * 109.68900 * 76.71410 * 29 28 26 48 48 H 1.09000 * 109.71968 * 316.15587 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4424 5 1 1.5001 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1161 7 6 3.2179 3.0352 -1.4424 8 7 3.3579 3.5183 -2.8184 9 6 4.0076 4.6978 -3.0671 10 1 4.4172 5.2717 -2.2489 11 6 4.1397 5.1559 -4.3707 12 7 3.6410 4.4563 -5.3679 13 14 5.0267 6.7645 -4.7102 14 1 5.4910 7.3536 -3.4286 15 1 6.1951 6.5093 -5.5904 16 1 4.0984 7.7095 -5.3813 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0001 19 6 1.3854 -2.4724 0.0005 20 1 0.7590 -2.5299 0.8907 21 6 0.5041 -2.5525 -1.2490 22 6 -0.4470 -3.7506 -1.1313 23 6 0.3629 -4.9631 -0.7541 24 7 0.0349 -6.2487 -0.8313 25 7 1.0285 -6.9539 -0.4071 26 7 2.0026 -6.1850 -0.0511 27 6 3.2961 -6.6231 0.4793 28 6 1.6218 -4.9121 -0.2531 29 6 2.3826 -3.6383 0.0015 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 3.1498 1.1383 0.5139 34 1 1.6083 2.0283 0.5139 35 1 4.0872 0.5460 -1.7126 36 1 4.2062 2.8838 -1.0083 37 1 2.6709 3.7709 -0.8528 38 1 2.9864 3.0049 -3.5529 39 1 3.7330 4.7765 -6.2789 40 1 -0.0774 -1.6353 -1.3425 41 1 1.1339 -2.6742 -2.1302 42 1 -0.9416 -3.9223 -2.0872 43 1 -1.1933 -3.5536 -0.3616 44 1 3.2385 -6.6935 1.5654 45 1 3.5469 -7.5996 0.0647 46 1 4.0654 -5.9023 0.2021 47 1 3.1226 -3.4891 -0.7849 48 1 2.8812 -3.6947 0.9691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332560711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:25 Heat of formation + Delta-G solvation = 29.096644 kcal Electronic energy + Delta-G solvation = -29793.592421 eV Core-core repulsion = 25693.381685 eV Total energy + Delta-G solvation = -4100.210736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.67714 -40.49406 -37.66988 -36.68754 -35.41788 -35.17559 -33.98889 -31.44399 -30.90998 -30.84642 -29.24265 -28.17893 -27.06270 -25.91020 -24.40942 -23.42631 -22.51243 -21.70064 -21.16744 -20.31378 -19.17840 -17.69942 -17.29136 -17.15402 -16.86447 -16.58147 -15.78279 -15.38421 -15.13843 -14.81825 -14.51027 -14.35434 -14.20512 -14.12100 -13.73415 -13.61655 -13.56312 -13.20976 -13.05307 -12.94458 -12.75064 -12.50125 -12.43976 -12.15396 -12.09158 -11.80328 -11.51499 -11.35819 -11.19909 -10.93850 -10.83420 -10.80403 -10.65854 -10.24259 -10.12668 -9.91642 -9.76694 -9.56582 -9.10931 -8.89955 -8.56638 -6.91665 -5.74869 -3.04281 1.27954 2.01477 2.28450 2.50804 2.84368 3.43400 3.48492 3.51188 3.79750 4.03311 4.25409 4.37460 4.45221 4.51872 4.54620 4.57528 4.67363 4.79929 4.85103 4.88132 4.92276 5.01306 5.09868 5.12579 5.20235 5.29127 5.31079 5.41247 5.52656 5.53995 5.57968 5.64376 5.70287 5.72442 5.74256 5.89485 5.99578 6.00091 6.22611 6.26874 6.39089 6.52229 6.73978 7.23888 7.69349 8.06405 8.19023 8.24856 8.43420 9.54762 10.12813 10.48265 11.47579 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.002164 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.367948 B =12936.402637 C =13069.627033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.606 5.606 3 C 0.084 3.916 4 C 0.087 3.913 5 H 0.096 0.904 6 O -0.548 6.548 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.528 3.472 18 O -0.534 6.534 19 C -0.097 4.097 20 H 0.101 0.899 21 C -0.125 4.125 22 C -0.030 4.030 23 C -0.021 4.021 24 N -0.262 5.262 25 N -0.100 5.100 26 N -0.284 5.284 27 C 0.079 3.921 28 C -0.014 4.014 29 C -0.025 4.025 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.373 0.627 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.388 0.612 39 H 0.255 0.745 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.226 -19.271 16.737 26.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.339 5.339 3 C -0.039 4.039 4 C 0.026 3.974 5 H 0.113 0.887 6 O -0.353 6.353 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.315 3.685 18 O -0.411 6.411 19 C -0.119 4.119 20 H 0.119 0.881 21 C -0.163 4.163 22 C -0.069 4.069 23 C -0.161 4.161 24 N -0.126 5.126 25 N -0.078 5.078 26 N -0.076 5.076 27 C -0.062 4.062 28 C -0.149 4.149 29 C -0.064 4.064 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.221 0.779 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.222 0.778 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.469 -20.656 16.262 27.330 hybrid contribution 1.299 1.765 0.090 2.194 sum -6.170 -18.890 16.352 25.735 Atomic orbital electron populations 1.22040 0.79677 1.03188 1.02267 1.47629 1.06812 1.05968 1.73445 1.22299 0.98281 0.84502 0.98822 1.22470 0.95707 0.88269 0.90940 0.88653 1.86539 1.33046 1.58891 1.56777 1.21242 0.96771 0.92555 0.89730 1.42257 1.68196 1.25123 1.01435 1.19261 1.28269 0.97577 0.92168 0.91232 1.24763 1.01555 0.99036 0.95633 1.69689 1.50490 1.39055 0.98579 0.86118 0.79033 0.83281 0.77745 1.20588 1.21836 1.21860 1.20223 0.87771 0.84806 0.75651 1.90667 1.13819 1.87154 1.49434 1.21258 0.97395 0.92031 1.01254 0.88104 1.21944 0.98030 0.99282 0.97064 1.19949 0.96074 0.87956 1.02887 1.21712 0.94368 0.94231 1.05809 1.74791 1.19079 1.02596 1.16165 1.78579 0.92520 1.19239 1.17416 1.46824 1.14220 1.04749 1.41795 1.22305 0.79562 1.03612 1.00767 1.21831 0.97821 0.87809 1.07396 1.19917 0.96348 0.86090 1.04061 0.91664 0.90799 0.90816 0.89495 0.89619 0.77913 0.96172 0.95858 0.77754 0.93546 0.88726 0.90257 0.89185 0.89758 0.88966 0.87889 0.88055 0.88241 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 8.85 59.85 0.53 0.99 16 2 N -0.61 -6.08 2.83 -181.57 -0.51 -6.59 16 3 C 0.08 0.99 5.19 -4.05 -0.02 0.97 16 4 C 0.09 1.37 3.27 -26.74 -0.09 1.28 16 5 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 6 O -0.55 -9.77 12.09 -43.96 -0.53 -10.30 16 7 C 0.13 2.45 5.90 -4.04 -0.02 2.43 16 8 N -0.73 -18.62 5.55 -59.91 -0.33 -18.95 16 9 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 10 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 13 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 C 0.53 5.81 6.58 -10.98 -0.07 5.74 16 18 O -0.53 -7.57 14.19 -3.17 -0.04 -7.62 16 19 C -0.10 -0.79 1.69 -91.50 -0.15 -0.94 16 20 H 0.10 0.64 7.38 -51.93 -0.38 0.26 16 21 C -0.13 -0.97 4.82 -26.45 -0.13 -1.10 16 22 C -0.03 -0.23 6.30 -27.71 -0.17 -0.40 16 23 C -0.02 -0.23 7.11 -83.12 -0.59 -0.82 16 24 N -0.26 -3.49 12.40 33.16 0.41 -3.08 16 25 N -0.10 -1.25 13.19 60.35 0.80 -0.45 16 26 N -0.28 -2.71 3.73 -64.00 -0.24 -2.95 16 27 C 0.08 0.36 11.27 59.85 0.67 1.04 16 28 C -0.01 -0.14 6.76 -82.50 -0.56 -0.70 16 29 C -0.02 -0.21 4.68 -27.74 -0.13 -0.34 16 30 H 0.07 0.43 6.79 -51.93 -0.35 0.08 16 31 H 0.07 0.33 6.10 -51.93 -0.32 0.01 16 32 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 33 H 0.09 1.09 7.42 -51.93 -0.39 0.71 16 34 H 0.09 0.83 7.89 -51.93 -0.41 0.42 16 35 H 0.37 6.30 8.45 45.56 0.38 6.68 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.39 10.75 7.67 -40.82 -0.31 10.44 16 39 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.09 0.63 4.42 -51.93 -0.23 0.40 16 41 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 46 H 0.10 0.32 7.96 -51.93 -0.41 -0.10 16 47 H 0.10 0.96 7.78 -51.93 -0.40 0.56 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -37.46 384.98 -6.52 -43.97 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.58 Total: 9.89 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.98 Total: 0.66 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.85 Total: -59.94 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.58 Total: -17.92 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.46 -6.52 -43.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332560711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.067 kcal (2) G-P(sol) polarization free energy of solvation -37.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds