Wall clock time and date at job start Tue Mar 31 2020 20:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99684 * 2 1 4 4 C 1.52994 * 109.47211 * 270.00047 * 3 2 1 5 5 H 1.08995 * 109.47674 * 60.00219 * 4 3 2 6 6 O 1.42900 * 109.47343 * 300.00174 * 4 3 2 7 7 C 1.52998 * 109.47095 * 180.02562 * 4 3 2 8 8 N 1.46506 * 109.47237 * 184.99775 * 7 4 3 9 9 C 1.36939 * 120.00073 * 179.72302 * 8 7 4 10 10 H 1.08004 * 119.99859 * 0.02562 * 9 8 7 11 11 C 1.38805 * 119.99849 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00455 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00168 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46615 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47374 * 119.99782 * 13 11 9 16 16 H 1.48495 * 109.47187 * 240.00172 * 13 11 9 17 17 C 1.34775 * 119.99928 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00019 * 179.97438 * 17 2 1 19 19 C 1.50705 * 120.00171 * 0.02562 * 17 2 1 20 20 H 1.09002 * 109.45205 * 299.96303 * 19 17 2 21 21 C 1.53110 * 109.45849 * 59.91390 * 19 17 2 22 22 C 1.53423 * 109.57733 * 190.09328 * 21 19 17 23 23 C 1.50603 * 108.33556 * 310.18907 * 22 21 19 24 24 N 1.32905 * 129.16058 * 196.61174 * 23 22 21 25 25 N 1.29012 * 108.63510 * 179.77245 * 24 23 22 26 26 N 1.29106 * 110.25949 * 0.02562 * 25 24 23 27 27 C 1.46506 * 126.01001 * 180.09904 * 26 25 24 28 28 C 1.34394 * 107.98782 * 0.07044 * 26 25 24 29 29 C 1.50540 * 129.26078 * 179.84779 * 28 26 25 30 30 H 1.09002 * 109.47261 * 90.00151 * 1 2 3 31 31 H 1.09004 * 109.47356 * 209.99684 * 1 2 3 32 32 H 1.09000 * 109.47560 * 329.99694 * 1 2 3 33 33 H 1.09003 * 109.46485 * 149.99943 * 3 2 1 34 34 H 1.09000 * 109.47038 * 30.00294 * 3 2 1 35 35 H 0.96701 * 113.99949 * 300.00823 * 6 4 3 36 36 H 1.09001 * 109.47671 * 65.00115 * 7 4 3 37 37 H 1.08998 * 109.47454 * 305.00112 * 7 4 3 38 38 H 0.97005 * 119.99811 * 0.02562 * 8 7 4 39 39 H 0.97000 * 120.00679 * 179.97438 * 12 11 9 40 40 H 1.09003 * 109.45060 * 310.12460 * 21 19 17 41 41 H 1.08998 * 109.45502 * 70.06020 * 21 19 17 42 42 H 1.08995 * 109.69411 * 190.47831 * 22 21 19 43 43 H 1.09003 * 109.71909 * 69.91369 * 22 21 19 44 44 H 1.08993 * 109.47706 * 269.96313 * 27 26 25 45 45 H 1.09008 * 109.46855 * 29.96252 * 27 26 25 46 46 H 1.09001 * 109.47024 * 149.95785 * 27 26 25 47 47 H 1.09004 * 109.68900 * 76.71410 * 29 28 26 48 48 H 1.09000 * 109.71968 * 316.15587 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4424 5 1 1.5001 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1161 7 6 3.2179 3.0352 -1.4424 8 7 3.3579 3.5183 -2.8184 9 6 4.0076 4.6978 -3.0671 10 1 4.4172 5.2717 -2.2489 11 6 4.1397 5.1559 -4.3707 12 7 3.6410 4.4563 -5.3679 13 14 5.0267 6.7645 -4.7102 14 1 5.4910 7.3536 -3.4286 15 1 6.1951 6.5093 -5.5904 16 1 4.0984 7.7095 -5.3813 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0001 19 6 1.3854 -2.4724 0.0005 20 1 0.7590 -2.5299 0.8907 21 6 0.5041 -2.5525 -1.2490 22 6 -0.4470 -3.7506 -1.1313 23 6 0.3629 -4.9631 -0.7541 24 7 0.0349 -6.2487 -0.8313 25 7 1.0285 -6.9539 -0.4071 26 7 2.0026 -6.1850 -0.0511 27 6 3.2961 -6.6231 0.4793 28 6 1.6218 -4.9121 -0.2531 29 6 2.3826 -3.6383 0.0015 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 3.1498 1.1383 0.5139 34 1 1.6083 2.0283 0.5139 35 1 4.0872 0.5460 -1.7126 36 1 4.2062 2.8838 -1.0083 37 1 2.6709 3.7709 -0.8528 38 1 2.9864 3.0049 -3.5529 39 1 3.7330 4.7765 -6.2789 40 1 -0.0774 -1.6353 -1.3425 41 1 1.1339 -2.6742 -2.1302 42 1 -0.9416 -3.9223 -2.0872 43 1 -1.1933 -3.5536 -0.3616 44 1 3.2385 -6.6935 1.5654 45 1 3.5469 -7.5996 0.0647 46 1 4.0654 -5.9023 0.2021 47 1 3.1226 -3.4891 -0.7849 48 1 2.8812 -3.6947 0.9691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332560711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:24 Heat of formation + Delta-G solvation = -0.024594 kcal Electronic energy + Delta-G solvation = -29794.855213 eV Core-core repulsion = 25693.381685 eV Total energy + Delta-G solvation = -4101.473528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.44014 -41.32232 -38.86268 -37.53823 -36.41845 -35.87294 -35.81283 -33.20184 -31.88177 -31.53924 -30.49342 -28.74267 -27.94152 -27.10745 -25.56204 -24.44567 -23.80650 -22.58492 -22.38328 -21.06684 -19.95726 -19.21937 -18.44959 -17.96513 -17.79911 -17.54291 -16.66199 -16.58837 -16.47463 -16.14904 -15.59847 -15.39688 -15.08996 -14.87371 -14.76192 -14.74334 -14.35576 -14.13130 -14.08453 -13.73895 -13.70305 -13.66144 -13.25577 -13.08006 -12.97489 -12.86540 -12.79423 -12.60971 -12.47907 -12.12154 -12.04050 -11.99512 -11.86464 -11.77388 -11.52661 -11.08065 -10.97175 -10.94821 -10.61063 -9.87525 -9.47982 -9.00427 -7.94604 -5.24211 0.52806 1.42749 1.46900 1.47272 1.48357 1.58300 1.68425 2.08271 2.55914 3.12379 3.35997 3.37849 3.55365 3.72703 3.76174 3.78732 3.81448 3.90149 4.06514 4.14513 4.18894 4.24977 4.30505 4.39921 4.45618 4.49539 4.53865 4.56415 4.60260 4.65271 4.76331 4.82642 4.88337 4.92237 4.94405 4.95437 5.04763 5.15347 5.23662 5.29171 5.35404 5.47320 5.56280 5.61298 6.26565 6.46963 6.85087 7.25837 7.32908 7.44261 8.09892 8.32004 9.29011 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.002164 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.367948 B =12936.402637 C =13069.627033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.605 5.605 3 C 0.095 3.905 4 C 0.097 3.903 5 H 0.090 0.910 6 O -0.565 6.565 7 C 0.122 3.878 8 N -0.742 5.742 9 C -0.245 4.245 10 H 0.078 0.922 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.264 1.264 15 H -0.295 1.295 16 H -0.292 1.292 17 C 0.522 3.478 18 O -0.572 6.572 19 C -0.089 4.089 20 H 0.129 0.871 21 C -0.117 4.117 22 C -0.025 4.025 23 C -0.033 4.033 24 N -0.299 5.299 25 N -0.130 5.130 26 N -0.278 5.278 27 C 0.066 3.934 28 C -0.014 4.014 29 C -0.018 4.018 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.375 0.625 36 H 0.021 0.979 37 H 0.040 0.960 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.110 0.890 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.083 0.917 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 -18.605 18.954 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.336 5.336 3 C -0.029 4.029 4 C 0.036 3.964 5 H 0.108 0.892 6 O -0.371 6.371 7 C -0.005 4.005 8 N -0.384 5.384 9 C -0.376 4.376 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.188 1.188 15 H -0.223 1.223 16 H -0.219 1.219 17 C 0.311 3.689 18 O -0.451 6.451 19 C -0.111 4.111 20 H 0.147 0.853 21 C -0.155 4.155 22 C -0.064 4.064 23 C -0.174 4.174 24 N -0.163 5.163 25 N -0.107 5.107 26 N -0.070 5.070 27 C -0.073 4.073 28 C -0.150 4.150 29 C -0.057 4.057 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.132 0.868 35 H 0.223 0.777 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.206 0.794 39 H 0.059 0.941 40 H 0.128 0.872 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.102 0.898 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.074 -20.013 18.541 28.452 hybrid contribution 1.516 1.525 -0.537 2.217 sum -6.558 -18.488 18.004 26.626 Atomic orbital electron populations 1.22348 0.77267 1.05480 1.02999 1.47711 1.08291 1.04977 1.72667 1.22062 0.99036 0.86130 0.95630 1.22409 0.94311 0.86138 0.93536 0.89238 1.86517 1.33412 1.59328 1.57835 1.21472 0.97509 0.94787 0.86722 1.42490 1.67914 1.24513 1.03506 1.19701 1.27270 0.98249 0.92430 0.90432 1.25632 1.03173 1.02707 0.95626 1.69854 1.52537 1.41014 0.98709 0.85040 0.77420 0.79181 0.77905 1.18793 1.22267 1.21871 1.20728 0.87512 0.85839 0.74810 1.90652 1.15569 1.87749 1.51137 1.21244 0.97219 0.90141 1.02478 0.85307 1.21883 0.97745 1.00000 0.95906 1.20038 0.96097 0.86557 1.03690 1.22264 0.95267 0.94302 1.05571 1.74736 1.20125 1.03829 1.17565 1.78492 0.93369 1.20003 1.18858 1.47202 1.14791 1.04569 1.40477 1.22734 0.77927 1.04592 1.02093 1.22031 0.97639 0.88256 1.07051 1.19874 0.96028 0.85604 1.04222 0.91651 0.88118 0.89117 0.90275 0.86766 0.77720 0.96160 0.94188 0.79446 0.94063 0.87189 0.92723 0.89233 0.87266 0.86807 0.86927 0.86504 0.89829 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 8.85 127.77 1.13 1.70 16 2 N -0.61 -10.61 2.83 -846.76 -2.39 -13.00 16 3 C 0.10 2.03 5.19 86.38 0.45 2.47 16 4 C 0.10 2.94 3.27 30.59 0.10 3.04 16 5 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 6 O -0.57 -20.24 12.09 -140.63 -1.70 -21.94 16 7 C 0.12 4.65 5.90 86.38 0.51 5.16 16 8 N -0.74 -38.14 5.55 -343.44 -1.91 -40.05 16 9 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 10 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 11 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 12 N -0.97 -60.79 13.06 21.65 0.28 -60.51 16 13 Si 0.98 46.46 29.55 68.60 2.03 48.48 16 14 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 15 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 16 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 17 C 0.52 10.56 6.58 87.66 0.58 11.14 16 18 O -0.57 -15.79 14.19 5.32 0.08 -15.72 16 19 C -0.09 -1.24 1.69 -11.36 -0.02 -1.26 16 20 H 0.13 1.12 7.38 -2.39 -0.02 1.10 16 21 C -0.12 -1.62 4.82 30.77 0.15 -1.47 16 22 C -0.02 -0.34 6.30 29.96 0.19 -0.15 16 23 C -0.03 -0.68 7.11 41.75 0.30 -0.38 16 24 N -0.30 -7.98 12.40 -48.99 -0.61 -8.59 16 25 N -0.13 -3.26 13.19 37.02 0.49 -2.77 16 26 N -0.28 -5.10 3.73 -356.39 -1.33 -6.43 16 27 C 0.07 0.52 11.27 127.77 1.44 1.96 16 28 C -0.01 -0.27 6.76 41.50 0.28 0.02 16 29 C -0.02 -0.27 4.68 29.94 0.14 -0.13 16 30 H 0.07 0.65 6.79 -2.39 -0.02 0.64 16 31 H 0.10 0.43 6.10 -2.39 -0.01 0.41 16 32 H 0.09 0.60 7.89 -2.39 -0.02 0.58 16 33 H 0.08 1.85 7.42 -2.39 -0.02 1.83 16 34 H 0.11 1.79 7.89 -2.39 -0.02 1.77 16 35 H 0.38 12.87 8.45 -74.06 -0.63 12.24 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.37 21.09 7.67 -92.70 -0.71 20.38 16 39 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.11 1.18 4.42 -2.39 -0.01 1.17 16 41 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.12 0.56 7.96 -2.39 -0.02 0.54 16 47 H 0.08 1.60 7.78 -2.38 -0.02 1.58 16 48 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -82.89 384.98 1.15 -81.74 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.34 Total: 33.78 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 6.55 Total: 4.99 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -5.47 Total: -131.34 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.63 Total: -37.66 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -82.89 1.15 -81.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332560711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.718 kcal (2) G-P(sol) polarization free energy of solvation -82.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds