Wall clock time and date at job start Tue Mar 31 2020 21:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 119.99815 * 2 1 4 4 C 1.53007 * 109.47169 * 269.99903 * 3 2 1 5 5 H 1.08999 * 109.46895 * 60.00055 * 4 3 2 6 6 O 1.42895 * 109.46997 * 299.99830 * 4 3 2 7 7 C 1.53002 * 109.47136 * 180.02562 * 4 3 2 8 8 N 1.46490 * 109.47053 * 184.99970 * 7 4 3 9 9 C 1.36945 * 120.00001 * 179.97438 * 8 7 4 10 10 H 1.07991 * 119.99885 * 0.02562 * 9 8 7 11 11 C 1.38808 * 119.99851 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00208 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99943 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46904 * 90.00057 * 13 11 9 15 15 H 1.48495 * 109.47411 * 210.00404 * 13 11 9 16 16 H 1.48502 * 109.46795 * 330.00282 * 13 11 9 17 17 C 1.34780 * 120.00062 * 179.97438 * 2 1 3 18 18 O 1.21280 * 119.99589 * 179.97438 * 17 2 1 19 19 C 1.50694 * 119.99803 * 0.02562 * 17 2 1 20 20 C 1.50713 * 109.46980 * 179.97438 * 19 17 2 21 21 N 1.30829 * 125.95778 * 270.24174 * 20 19 17 22 22 C 1.33238 * 109.82502 * 180.19129 * 21 20 19 23 23 C 1.50706 * 125.52812 * 179.85645 * 22 21 20 24 24 C 1.52995 * 117.50181 * 188.46702 * 23 22 21 25 25 C 1.52993 * 117.50081 * 119.80467 * 23 22 21 26 26 N 1.30716 * 108.94775 * 359.59544 * 22 21 20 27 27 N 1.34425 * 125.95882 * 89.99303 * 20 19 17 28 28 C 1.46497 * 126.82734 * 359.93457 * 27 20 19 29 29 H 1.09000 * 109.46741 * 269.99515 * 1 2 3 30 30 H 1.08996 * 109.47324 * 29.99957 * 1 2 3 31 31 H 1.09001 * 109.47109 * 149.99995 * 1 2 3 32 32 H 1.09000 * 109.47274 * 30.00287 * 3 2 1 33 33 H 1.08999 * 109.47167 * 150.00125 * 3 2 1 34 34 H 0.96695 * 114.00583 * 300.00062 * 6 4 3 35 35 H 1.09001 * 109.46949 * 305.00744 * 7 4 3 36 36 H 1.09007 * 109.46767 * 65.00061 * 7 4 3 37 37 H 0.96999 * 120.00209 * 0.02562 * 8 7 4 38 38 H 0.96999 * 119.99993 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47897 * 59.99744 * 19 17 2 40 40 H 1.08999 * 109.47355 * 299.98706 * 19 17 2 41 41 H 1.08998 * 115.54512 * 334.13464 * 23 22 21 42 42 H 1.09000 * 117.49859 * 0.02562 * 24 23 22 43 43 H 1.08999 * 117.49900 * 145.01759 * 24 23 22 44 44 H 1.08998 * 117.50372 * 214.98309 * 25 23 22 45 45 H 1.09006 * 117.50059 * 359.97438 * 25 23 22 46 46 H 1.09001 * 109.47002 * 270.01603 * 28 27 20 47 47 H 1.09003 * 109.47312 * 30.01502 * 28 27 20 48 48 H 1.09003 * 109.47489 * 150.01568 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 1.5000 1.8407 -1.9564 6 8 3.2248 0.7146 -2.1161 7 6 3.2180 3.0351 -1.4426 8 7 3.3579 3.5182 -2.8184 9 6 4.0122 4.6952 -3.0676 10 1 4.4254 5.2669 -2.2499 11 6 4.1453 5.1526 -4.3714 12 7 3.6421 4.4555 -5.3681 13 14 5.0384 6.7577 -4.7115 14 1 6.4827 6.4852 -4.9232 15 1 4.4707 7.3919 -5.9283 16 1 4.8717 7.6719 -3.5532 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0001 19 6 1.3854 -2.4723 0.0005 20 6 2.3648 -3.6178 0.0005 21 7 2.8674 -4.1988 -1.0585 22 6 3.6948 -5.1754 -0.6883 23 6 4.4625 -6.0741 -1.6231 24 6 5.2060 -7.2621 -1.0094 25 6 5.9894 -6.0535 -1.5279 26 7 3.7369 -5.2239 0.6173 27 7 2.8779 -4.2177 1.0886 28 6 2.5973 -3.8872 2.4880 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0873 0.5461 -1.7126 35 1 2.6710 3.7708 -0.8529 36 1 4.2063 2.8836 -1.0083 37 1 2.9865 3.0049 -3.5528 38 1 3.7348 4.7754 -6.2791 39 1 0.7591 -2.5303 -0.8896 40 1 0.7586 -2.5299 0.8904 41 1 4.0216 -6.2120 -2.6104 42 1 5.1396 -7.3939 0.0706 43 1 5.2547 -8.1814 -1.5930 44 1 6.5531 -6.1782 -2.4524 45 1 6.4387 -5.3896 -0.7893 46 1 3.3092 -3.1379 2.8341 47 1 1.5847 -3.4924 2.5721 48 1 2.6891 -4.7852 3.0989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332608304.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:04 Heat of formation + Delta-G solvation = 51.960297 kcal Electronic energy + Delta-G solvation = -29251.010439 eV Core-core repulsion = 25151.791145 eV Total energy + Delta-G solvation = -4099.219294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.35264 -40.04906 -37.50228 -37.21192 -35.36166 -34.11589 -33.95903 -32.85692 -31.28579 -29.95720 -28.73939 -27.50999 -26.99897 -25.19337 -23.93326 -22.84760 -22.57028 -21.29411 -20.94015 -20.13167 -19.24897 -17.56079 -17.25457 -17.12202 -16.65158 -16.12403 -15.87881 -15.63797 -15.23899 -15.11229 -14.80334 -14.41215 -14.05212 -13.86937 -13.65037 -13.60467 -13.38084 -13.28503 -12.94757 -12.67406 -12.54888 -12.34846 -12.29684 -12.08072 -11.87586 -11.70143 -11.49684 -11.09438 -10.91428 -10.79357 -10.72785 -10.65241 -10.13936 -10.11437 -10.06308 -9.80590 -9.73803 -9.59226 -9.31786 -8.86721 -8.58258 -6.88913 -5.71788 -3.01326 1.35823 2.06013 2.45137 2.55518 2.91260 3.45927 3.50340 3.52416 3.57459 3.78635 4.11299 4.20712 4.31798 4.49512 4.59871 4.64490 4.74945 4.77120 4.83535 4.87721 4.92430 4.99005 5.01240 5.06493 5.17596 5.30396 5.35623 5.43270 5.45060 5.55715 5.60773 5.65951 5.74320 5.90131 5.92428 6.00519 6.15170 6.23146 6.29114 6.37503 6.53967 6.57527 6.76067 7.17864 7.71402 7.99864 8.01566 8.23967 8.46476 9.57586 10.15792 10.51329 11.50608 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.002377 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.581408 B =11776.717983 C =13197.736916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.086 3.914 4 C 0.086 3.914 5 H 0.096 0.904 6 O -0.546 6.546 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.526 3.474 18 O -0.521 6.521 19 C -0.063 4.063 20 C 0.302 3.698 21 N -0.521 5.521 22 C 0.258 3.742 23 C -0.071 4.071 24 C -0.162 4.162 25 C -0.157 4.157 26 N -0.316 5.316 27 N -0.375 5.375 28 C 0.096 3.904 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.374 0.626 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.388 0.612 38 H 0.255 0.745 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 -21.323 17.803 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.340 5.340 3 C -0.037 4.037 4 C 0.025 3.975 5 H 0.114 0.886 6 O -0.351 6.351 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.311 3.689 18 O -0.396 6.396 19 C -0.106 4.106 20 C 0.025 3.975 21 N -0.247 5.247 22 C -0.024 4.024 23 C -0.092 4.092 24 C -0.200 4.200 25 C -0.196 4.196 26 N -0.145 5.145 27 N -0.165 5.165 28 C -0.046 4.046 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.221 0.779 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.223 0.777 38 H 0.065 0.935 39 H 0.150 0.850 40 H 0.131 0.869 41 H 0.149 0.851 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.107 0.893 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.772 -21.568 17.622 28.916 hybrid contribution 0.500 1.210 0.089 1.312 sum -7.273 -20.358 17.712 27.947 Atomic orbital electron populations 1.21894 0.79342 1.04061 1.01749 1.47623 1.06911 1.05789 1.73707 1.22290 0.98192 0.84285 0.98974 1.22485 0.95811 0.88383 0.90857 0.88628 1.86563 1.33062 1.58754 1.56681 1.21235 0.96753 0.92483 0.89777 1.42248 1.68012 1.25299 1.01424 1.19213 1.28187 0.97808 0.92168 0.91302 1.24766 1.01500 0.99057 0.95628 1.69684 1.50231 1.39244 0.98617 0.86185 0.79384 0.83229 0.77340 1.21698 1.21745 1.20808 1.19910 0.87904 0.84425 0.76657 1.90738 1.13600 1.86846 1.48388 1.20205 0.95652 0.87887 1.06832 1.23277 0.96099 0.95405 0.82699 1.70254 1.14905 1.10649 1.28920 1.23049 0.95571 0.94412 0.89340 1.20057 0.93077 0.98172 0.97853 1.23034 1.02698 0.92399 1.01837 1.23045 0.91852 1.01056 1.03651 1.77910 1.14288 1.10208 1.12076 1.50054 1.33248 1.25641 1.07551 1.21932 1.02290 1.02940 0.77435 0.92365 0.90268 0.90911 0.89459 0.89516 0.77875 0.95859 0.96219 0.77721 0.93491 0.85002 0.86948 0.85090 0.87999 0.87919 0.87638 0.88506 0.90050 0.89288 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.24 59.85 0.61 1.08 16 2 N -0.61 -6.40 2.83 -181.57 -0.51 -6.92 16 3 C 0.09 1.06 5.15 -4.04 -0.02 1.03 16 4 C 0.09 1.42 3.27 -26.73 -0.09 1.33 16 5 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 6 O -0.55 -10.63 12.09 -43.97 -0.53 -11.16 16 7 C 0.13 2.55 5.90 -4.05 -0.02 2.53 16 8 N -0.73 -19.12 5.55 -59.91 -0.33 -19.45 16 9 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 12 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 C 0.53 6.47 7.18 -10.99 -0.08 6.39 16 18 O -0.52 -8.66 14.40 -3.18 -0.05 -8.70 16 19 C -0.06 -0.57 4.58 -29.03 -0.13 -0.71 16 20 C 0.30 3.85 6.48 -155.69 -1.01 2.85 16 21 N -0.52 -8.05 11.19 -8.15 -0.09 -8.14 16 22 C 0.26 3.70 7.69 -156.85 -1.21 2.49 16 23 C -0.07 -0.80 6.33 -91.77 -0.58 -1.38 16 24 C -0.16 -1.42 10.14 -26.70 -0.27 -1.69 16 25 C -0.16 -1.55 10.24 -26.70 -0.27 -1.82 16 26 N -0.32 -4.39 12.24 32.42 0.40 -3.99 16 27 N -0.37 -4.43 4.04 -65.09 -0.26 -4.69 16 28 C 0.10 0.65 11.33 59.85 0.68 1.33 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.07 0.35 6.44 -51.93 -0.33 0.02 16 32 H 0.09 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 34 H 0.37 7.05 8.45 45.56 0.38 7.43 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.39 11.06 7.67 -40.82 -0.31 10.74 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 39 H 0.13 1.05 7.40 -51.93 -0.38 0.66 16 40 H 0.11 0.52 7.09 -51.93 -0.37 0.15 16 41 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.10 0.96 7.88 -51.93 -0.41 0.55 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.31 7.11 -51.93 -0.37 -0.06 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 403.43 15.07 6.08 6.08 Total: -1.00 -39.84 403.43 -9.03 -48.87 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -6.79 Total: 12.84 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -2.64 Total: 5.78 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -0.08 Total: -71.59 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.58 Total: -19.87 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -39.84 -9.03 -48.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332608304.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.831 kcal (2) G-P(sol) polarization free energy of solvation -39.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds