Wall clock time and date at job start Tue Mar 31 2020 21:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 119.99815 * 2 1 4 4 C 1.53007 * 109.47169 * 269.99903 * 3 2 1 5 5 H 1.08999 * 109.46895 * 60.00055 * 4 3 2 6 6 O 1.42895 * 109.46997 * 299.99830 * 4 3 2 7 7 C 1.53002 * 109.47136 * 180.02562 * 4 3 2 8 8 N 1.46490 * 109.47053 * 184.99970 * 7 4 3 9 9 C 1.36945 * 120.00001 * 179.97438 * 8 7 4 10 10 H 1.07991 * 119.99885 * 0.02562 * 9 8 7 11 11 C 1.38808 * 119.99851 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00208 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99943 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46904 * 90.00057 * 13 11 9 15 15 H 1.48495 * 109.47411 * 210.00404 * 13 11 9 16 16 H 1.48502 * 109.46795 * 330.00282 * 13 11 9 17 17 C 1.34780 * 120.00062 * 179.97438 * 2 1 3 18 18 O 1.21280 * 119.99589 * 179.97438 * 17 2 1 19 19 C 1.50694 * 119.99803 * 0.02562 * 17 2 1 20 20 C 1.50713 * 109.46980 * 179.97438 * 19 17 2 21 21 N 1.30829 * 125.95778 * 270.24174 * 20 19 17 22 22 C 1.33238 * 109.82502 * 180.19129 * 21 20 19 23 23 C 1.50706 * 125.52812 * 179.85645 * 22 21 20 24 24 C 1.52995 * 117.50181 * 188.46702 * 23 22 21 25 25 C 1.52993 * 117.50081 * 119.80467 * 23 22 21 26 26 N 1.30716 * 108.94775 * 359.59544 * 22 21 20 27 27 N 1.34425 * 125.95882 * 89.99303 * 20 19 17 28 28 C 1.46497 * 126.82734 * 359.93457 * 27 20 19 29 29 H 1.09000 * 109.46741 * 269.99515 * 1 2 3 30 30 H 1.08996 * 109.47324 * 29.99957 * 1 2 3 31 31 H 1.09001 * 109.47109 * 149.99995 * 1 2 3 32 32 H 1.09000 * 109.47274 * 30.00287 * 3 2 1 33 33 H 1.08999 * 109.47167 * 150.00125 * 3 2 1 34 34 H 0.96695 * 114.00583 * 300.00062 * 6 4 3 35 35 H 1.09001 * 109.46949 * 305.00744 * 7 4 3 36 36 H 1.09007 * 109.46767 * 65.00061 * 7 4 3 37 37 H 0.96999 * 120.00209 * 0.02562 * 8 7 4 38 38 H 0.96999 * 119.99993 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47897 * 59.99744 * 19 17 2 40 40 H 1.08999 * 109.47355 * 299.98706 * 19 17 2 41 41 H 1.08998 * 115.54512 * 334.13464 * 23 22 21 42 42 H 1.09000 * 117.49859 * 0.02562 * 24 23 22 43 43 H 1.08999 * 117.49900 * 145.01759 * 24 23 22 44 44 H 1.08998 * 117.50372 * 214.98309 * 25 23 22 45 45 H 1.09006 * 117.50059 * 359.97438 * 25 23 22 46 46 H 1.09001 * 109.47002 * 270.01603 * 28 27 20 47 47 H 1.09003 * 109.47312 * 30.01502 * 28 27 20 48 48 H 1.09003 * 109.47489 * 150.01568 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 1.5000 1.8407 -1.9564 6 8 3.2248 0.7146 -2.1161 7 6 3.2180 3.0351 -1.4426 8 7 3.3579 3.5182 -2.8184 9 6 4.0122 4.6952 -3.0676 10 1 4.4254 5.2669 -2.2499 11 6 4.1453 5.1526 -4.3714 12 7 3.6421 4.4555 -5.3681 13 14 5.0384 6.7577 -4.7115 14 1 6.4827 6.4852 -4.9232 15 1 4.4707 7.3919 -5.9283 16 1 4.8717 7.6719 -3.5532 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0001 19 6 1.3854 -2.4723 0.0005 20 6 2.3648 -3.6178 0.0005 21 7 2.8674 -4.1988 -1.0585 22 6 3.6948 -5.1754 -0.6883 23 6 4.4625 -6.0741 -1.6231 24 6 5.2060 -7.2621 -1.0094 25 6 5.9894 -6.0535 -1.5279 26 7 3.7369 -5.2239 0.6173 27 7 2.8779 -4.2177 1.0886 28 6 2.5973 -3.8872 2.4880 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0873 0.5461 -1.7126 35 1 2.6710 3.7708 -0.8529 36 1 4.2063 2.8836 -1.0083 37 1 2.9865 3.0049 -3.5528 38 1 3.7348 4.7754 -6.2791 39 1 0.7591 -2.5303 -0.8896 40 1 0.7586 -2.5299 0.8904 41 1 4.0216 -6.2120 -2.6104 42 1 5.1396 -7.3939 0.0706 43 1 5.2547 -8.1814 -1.5930 44 1 6.5531 -6.1782 -2.4524 45 1 6.4387 -5.3896 -0.7893 46 1 3.3092 -3.1379 2.8341 47 1 1.5847 -3.4924 2.5721 48 1 2.6891 -4.7852 3.0989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332608304.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:03 Heat of formation + Delta-G solvation = 21.601192 kcal Electronic energy + Delta-G solvation = -29252.326908 eV Core-core repulsion = 25151.791145 eV Total energy + Delta-G solvation = -4100.535763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.25429 -41.00316 -38.73148 -38.16245 -36.42264 -35.87101 -34.90987 -33.74564 -33.20130 -31.22978 -29.80117 -28.26748 -27.90453 -26.62997 -24.78751 -24.55736 -23.32874 -22.75206 -21.94263 -21.01911 -20.10908 -19.24689 -18.43665 -18.06218 -17.80952 -17.10210 -16.80908 -16.63875 -16.40331 -16.33419 -16.22740 -15.64140 -15.49791 -14.97376 -14.69620 -14.50643 -14.35372 -14.19997 -14.07049 -13.89443 -13.65865 -13.23350 -13.14757 -13.11265 -12.96116 -12.78451 -12.71347 -12.56799 -12.42919 -12.17397 -12.03001 -11.88143 -11.82611 -11.49526 -11.19722 -11.04589 -11.01500 -10.97531 -10.69269 -10.17589 -9.55539 -9.03211 -7.96109 -5.26436 0.45269 1.31886 1.44966 1.48193 1.55275 1.56580 1.64824 2.08865 2.54417 2.77964 2.99112 3.34699 3.35370 3.46028 3.48358 3.63669 3.78570 3.87114 3.97412 4.04338 4.07180 4.17522 4.21128 4.26345 4.33479 4.41983 4.50920 4.53295 4.57320 4.59955 4.70816 4.71762 4.85209 4.87999 4.90318 5.03722 5.08730 5.20680 5.23261 5.29341 5.35832 5.43815 5.48630 5.79553 6.24580 6.36268 6.76240 7.06312 7.14850 7.30687 8.06997 8.29588 9.27391 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.002377 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.581408 B =11776.717983 C =13197.736916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.603 5.603 3 C 0.098 3.902 4 C 0.093 3.907 5 H 0.092 0.908 6 O -0.567 6.567 7 C 0.124 3.876 8 N -0.742 5.742 9 C -0.248 4.248 10 H 0.078 0.922 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.289 1.289 15 H -0.293 1.293 16 H -0.265 1.265 17 C 0.519 3.481 18 O -0.574 6.574 19 C -0.056 4.056 20 C 0.294 3.706 21 N -0.566 5.566 22 C 0.239 3.761 23 C -0.095 4.095 24 C -0.138 4.138 25 C -0.160 4.160 26 N -0.339 5.339 27 N -0.374 5.374 28 C 0.085 3.915 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.373 0.627 35 H 0.044 0.956 36 H 0.017 0.983 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.145 0.855 40 H 0.165 0.835 41 H 0.136 0.864 42 H 0.093 0.907 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.129 0.871 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.940 -21.242 19.880 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.335 5.335 3 C -0.026 4.026 4 C 0.033 3.967 5 H 0.110 0.890 6 O -0.372 6.372 7 C -0.004 4.004 8 N -0.385 5.385 9 C -0.380 4.380 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.217 1.217 15 H -0.220 1.220 16 H -0.190 1.190 17 C 0.307 3.693 18 O -0.453 6.453 19 C -0.097 4.097 20 C 0.017 3.983 21 N -0.294 5.294 22 C -0.042 4.042 23 C -0.115 4.115 24 C -0.176 4.176 25 C -0.198 4.198 26 N -0.168 5.168 27 N -0.165 5.165 28 C -0.056 4.056 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.093 0.907 34 H 0.220 0.780 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.163 0.837 40 H 0.183 0.817 41 H 0.154 0.846 42 H 0.112 0.888 43 H 0.149 0.851 44 H 0.142 0.858 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.147 0.853 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.455 -21.478 19.788 30.697 hybrid contribution 0.967 1.188 -0.455 1.598 sum -8.488 -20.290 19.333 29.283 Atomic orbital electron populations 1.22263 0.76357 1.05016 1.04304 1.47706 1.08650 1.04529 1.72578 1.22035 0.98931 0.86087 0.95549 1.22480 0.94409 0.86186 0.93654 0.88967 1.86536 1.33306 1.59470 1.57886 1.21455 0.97366 0.94717 0.86846 1.42484 1.67785 1.24744 1.03440 1.19671 1.27347 0.98477 0.92517 0.90432 1.25668 1.03051 1.02839 0.95562 1.69858 1.52239 1.41243 0.98757 0.85079 0.77686 0.79230 0.77381 1.21654 1.21988 1.18957 1.20476 0.87488 0.85736 0.75628 1.90723 1.16031 1.87660 1.50885 1.20393 0.94833 0.84575 1.09939 1.23859 0.96179 0.95751 0.82488 1.70215 1.16324 1.11864 1.30956 1.23560 0.95875 0.94784 0.89956 1.20265 0.93561 0.99576 0.98122 1.23084 1.00247 0.92608 1.01635 1.23073 0.91156 1.01509 1.04091 1.77800 1.15334 1.11603 1.12071 1.50352 1.32250 1.24787 1.09067 1.22364 1.04457 1.03655 0.75081 0.88910 0.90383 0.89080 0.86145 0.90661 0.78009 0.93843 0.96508 0.79488 0.93998 0.83736 0.81741 0.84579 0.88814 0.85121 0.85778 0.90501 0.90414 0.85321 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.24 127.77 1.31 1.84 16 2 N -0.60 -11.18 2.83 -846.76 -2.39 -13.57 16 3 C 0.10 2.23 5.15 86.38 0.44 2.67 16 4 C 0.09 3.05 3.27 30.60 0.10 3.15 16 5 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 6 O -0.57 -22.61 12.09 -140.62 -1.70 -24.31 16 7 C 0.12 4.93 5.90 86.38 0.51 5.44 16 8 N -0.74 -39.52 5.55 -343.46 -1.91 -41.42 16 9 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 10 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 11 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 12 N -0.97 -62.02 13.06 21.65 0.28 -61.73 16 13 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 14 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 15 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 17 C 0.52 11.99 7.18 87.65 0.63 12.62 16 18 O -0.57 -19.25 14.40 5.33 0.08 -19.18 16 19 C -0.06 -0.87 4.58 29.10 0.13 -0.73 16 20 C 0.29 7.30 6.48 138.23 0.90 8.19 16 21 N -0.57 -17.91 11.19 -179.71 -2.01 -19.92 16 22 C 0.24 7.12 7.69 138.63 1.07 8.19 16 23 C -0.09 -2.20 6.33 -11.54 -0.07 -2.27 16 24 C -0.14 -2.37 10.14 30.62 0.31 -2.06 16 25 C -0.16 -3.22 10.24 30.62 0.31 -2.91 16 26 N -0.34 -9.59 12.24 -51.33 -0.63 -10.22 16 27 N -0.37 -8.59 4.04 -359.86 -1.45 -10.04 16 28 C 0.08 0.97 11.33 127.77 1.45 2.41 16 29 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.08 0.75 8.07 -2.39 -0.02 0.73 16 31 H 0.09 0.48 6.44 -2.39 -0.02 0.47 16 32 H 0.12 1.95 8.07 -2.39 -0.02 1.93 16 33 H 0.07 1.93 7.42 -2.39 -0.02 1.91 16 34 H 0.37 14.73 8.45 -74.06 -0.63 14.10 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.02 0.69 8.14 -2.38 -0.02 0.68 16 37 H 0.37 21.81 7.67 -92.71 -0.71 21.10 16 38 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.14 1.91 7.40 -2.39 -0.02 1.89 16 40 H 0.17 0.70 7.09 -2.39 -0.02 0.68 16 41 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 42 H 0.09 1.77 7.88 -2.39 -0.02 1.75 16 43 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.13 0.38 7.11 -2.39 -0.02 0.36 16 48 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -91.13 403.43 0.34 -90.79 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.35 Total: 41.47 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 8.39 Total: 18.78 kcal Atomic # 7 Polarization: -148.79 SS G_CDS: -8.11 Total: -156.90 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -1.62 Total: -43.49 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -91.13 0.34 -90.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332608304.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.391 kcal (2) G-P(sol) polarization free energy of solvation -91.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds