Wall clock time and date at job start Tue Mar 31 2020 21:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99959 * 2 1 4 4 C 1.53005 * 109.47028 * 89.99901 * 3 2 1 5 5 H 1.09005 * 109.47310 * 305.00257 * 4 3 2 6 6 O 1.42903 * 109.46806 * 64.99877 * 4 3 2 7 7 C 1.52992 * 109.47277 * 185.00044 * 4 3 2 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46676 * 90.00727 * 13 11 9 15 15 H 1.48502 * 109.46977 * 210.00025 * 13 11 9 16 16 H 1.48494 * 109.47494 * 330.00753 * 13 11 9 17 17 C 1.34775 * 120.00474 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00178 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99399 * 359.97438 * 17 2 1 20 20 C 1.50700 * 109.46716 * 180.02562 * 19 17 2 21 21 N 1.30833 * 125.96330 * 90.02786 * 20 19 17 22 22 C 1.33240 * 109.82989 * 179.97438 * 21 20 19 23 23 C 1.50699 * 125.52745 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.50095 * 188.74577 * 23 22 21 25 25 C 1.53001 * 117.49673 * 120.08380 * 23 22 21 26 26 N 1.30714 * 108.94873 * 0.02562 * 22 21 20 27 27 N 1.34434 * 125.96071 * 269.71827 * 20 19 17 28 28 C 1.46494 * 126.82372 * 0.02562 * 27 20 19 29 29 H 1.08997 * 109.47032 * 89.99610 * 1 2 3 30 30 H 1.08997 * 109.46896 * 209.99713 * 1 2 3 31 31 H 1.08998 * 109.46684 * 329.99938 * 1 2 3 32 32 H 1.09005 * 109.47213 * 330.00487 * 3 2 1 33 33 H 1.08996 * 109.47319 * 209.99820 * 3 2 1 34 34 H 0.96702 * 113.99305 * 60.00499 * 6 4 3 35 35 H 1.09004 * 109.47330 * 60.00123 * 7 4 3 36 36 H 1.09005 * 109.47124 * 300.00327 * 7 4 3 37 37 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 38 38 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47248 * 300.00314 * 19 17 2 40 40 H 1.08993 * 109.47026 * 60.00652 * 19 17 2 41 41 H 1.09000 * 115.54876 * 334.42394 * 23 22 21 42 42 H 1.08997 * 117.49460 * 359.97438 * 24 23 22 43 43 H 1.08999 * 117.49524 * 145.02593 * 24 23 22 44 44 H 1.09004 * 117.49988 * 214.98136 * 25 23 22 45 45 H 1.08995 * 117.50118 * 359.97438 * 25 23 22 46 46 H 1.09004 * 109.47242 * 89.99919 * 28 27 20 47 47 H 1.09000 * 109.47309 * 210.00378 * 28 27 20 48 48 H 1.09003 * 109.47455 * 330.00090 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4426 5 1 1.5061 1.7549 1.9816 6 8 3.3209 0.7725 2.0814 7 6 3.1060 3.0938 1.4445 8 7 3.3507 3.5164 2.8256 9 6 3.9327 4.7301 3.0774 10 1 4.2155 5.3739 2.2576 11 6 4.1641 5.1308 4.3861 12 7 3.8245 4.3440 5.3851 13 14 4.9588 6.7861 4.7295 14 1 3.9044 7.8236 4.8609 15 1 5.7374 6.7091 5.9917 16 1 5.8661 7.1416 3.6090 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 6 2.3648 -3.6177 -0.0005 21 7 2.8637 -4.2020 1.0584 22 6 3.6952 -5.1750 0.6882 23 6 4.4624 -6.0742 1.6230 24 6 5.5200 -6.9939 1.0093 25 6 4.2035 -7.5791 1.5268 26 7 3.7375 -5.2233 -0.6174 27 7 2.8737 -4.2212 -1.0886 28 6 2.5871 -3.8957 -2.4879 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6084 2.0285 -0.5138 33 1 3.1499 1.1385 -0.5138 34 1 4.1837 0.6812 1.6542 35 1 2.4436 3.8093 0.9571 36 1 4.0524 3.0493 0.9054 37 1 3.1004 2.9366 3.5618 38 1 3.9865 4.6238 6.2995 39 1 0.7591 -2.5302 0.8896 40 1 0.7586 -2.5298 -0.8903 41 1 4.6669 -5.6608 2.6106 42 1 5.6605 -6.9489 -0.0706 43 1 6.4200 -7.1859 1.5934 44 1 4.2381 -8.1558 2.4511 45 1 3.4780 -7.9187 0.7878 46 1 3.2974 -3.1474 -2.8398 47 1 2.6766 -4.7959 -3.0960 48 1 1.5741 -3.5017 -2.5693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332608306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:09 Heat of formation + Delta-G solvation = 52.225875 kcal Electronic energy + Delta-G solvation = -29183.664649 eV Core-core repulsion = 25084.456872 eV Total energy + Delta-G solvation = -4099.207778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.35090 -40.03564 -37.51610 -37.22363 -35.36098 -34.11673 -33.93760 -32.85814 -31.27468 -29.95952 -28.73727 -27.50982 -27.00496 -25.18664 -23.93429 -22.85069 -22.60701 -21.27554 -20.94065 -20.13121 -19.25110 -17.54110 -17.28394 -17.12002 -16.61564 -16.07557 -15.97337 -15.64736 -15.24669 -15.07822 -14.77420 -14.42258 -14.05514 -13.87761 -13.66195 -13.56956 -13.40424 -13.29835 -12.95231 -12.67044 -12.54183 -12.33183 -12.30433 -12.09616 -11.89663 -11.71140 -11.48840 -11.11065 -10.90452 -10.79768 -10.74598 -10.63685 -10.12801 -10.11715 -10.05721 -9.80604 -9.73432 -9.59463 -9.32226 -8.86668 -8.57401 -6.88632 -5.71405 -3.00966 1.36028 2.05543 2.46290 2.55036 2.91798 3.45654 3.50311 3.52833 3.59289 3.74733 4.11462 4.18799 4.32508 4.49030 4.59838 4.62409 4.73864 4.75704 4.83414 4.87609 4.93134 4.99054 5.01327 5.06721 5.18354 5.31400 5.35151 5.39110 5.44929 5.55413 5.57434 5.65400 5.73577 5.86189 5.92109 6.01297 6.15163 6.24159 6.29176 6.37981 6.53517 6.57564 6.75888 7.18221 7.71433 7.99915 8.02614 8.24996 8.46927 9.58020 10.16496 10.52249 11.50942 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002309 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.635614 B =12124.005912 C =13460.726394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.086 3.914 4 C 0.085 3.915 5 H 0.095 0.905 6 O -0.544 6.544 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.929 5.929 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.524 3.476 18 O -0.518 6.518 19 C -0.063 4.063 20 C 0.303 3.697 21 N -0.521 5.521 22 C 0.258 3.742 23 C -0.070 4.070 24 C -0.161 4.161 25 C -0.159 4.159 26 N -0.316 5.316 27 N -0.375 5.375 28 C 0.096 3.904 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.374 0.626 35 H 0.024 0.976 36 H 0.019 0.981 37 H 0.389 0.611 38 H 0.255 0.745 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.067 -21.479 -17.840 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C -0.037 4.037 4 C 0.025 3.975 5 H 0.113 0.887 6 O -0.349 6.349 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.577 5.577 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.310 3.690 18 O -0.393 6.393 19 C -0.106 4.106 20 C 0.025 3.975 21 N -0.247 5.247 22 C -0.023 4.023 23 C -0.091 4.091 24 C -0.198 4.198 25 C -0.198 4.198 26 N -0.145 5.145 27 N -0.165 5.165 28 C -0.046 4.046 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.221 0.779 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.224 0.776 38 H 0.065 0.935 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.150 0.850 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.512 -21.771 -17.645 29.288 hybrid contribution 0.473 1.283 -0.110 1.372 sum -8.038 -20.488 -17.755 28.277 Atomic orbital electron populations 1.21894 0.79362 1.04040 1.01769 1.47647 1.06893 1.05814 1.73831 1.22298 0.98202 0.84226 0.98957 1.22483 0.94640 0.89148 0.91276 0.88701 1.86575 1.29126 1.62301 1.56878 1.21229 0.96951 0.92382 0.89754 1.42240 1.73798 1.20133 1.00799 1.19213 1.32183 0.94238 0.91783 0.91316 1.24770 1.01995 0.98578 0.95609 1.69685 1.53010 1.36774 0.98243 0.86186 0.78865 0.83716 0.77376 1.21735 1.21729 1.20808 1.19916 0.87923 0.84420 0.76771 1.90746 1.13565 1.86817 1.48138 1.20206 0.95646 0.87918 1.06817 1.23272 0.96175 0.95310 0.82695 1.70254 1.14810 1.10754 1.28921 1.23035 0.95411 0.94574 0.89328 1.20075 1.01432 0.89492 0.98098 1.23041 0.93061 1.01786 1.01960 1.23032 0.99869 0.93430 1.03472 1.77911 1.13902 1.10575 1.12076 1.50058 1.33209 1.25696 1.07551 1.21931 1.02232 1.03001 0.77437 0.92362 0.90917 0.90270 0.89486 0.89503 0.77914 0.95862 0.96287 0.77619 0.93488 0.85027 0.86954 0.84976 0.87941 0.87810 0.87751 0.88705 0.90038 0.88893 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.24 59.85 0.61 1.07 16 2 N -0.61 -6.43 2.86 -181.56 -0.52 -6.95 16 3 C 0.09 1.06 5.11 -4.04 -0.02 1.04 16 4 C 0.09 1.42 3.30 -26.73 -0.09 1.33 16 5 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 6 O -0.54 -10.67 11.95 -42.91 -0.51 -11.18 16 7 C 0.13 2.52 5.92 -4.05 -0.02 2.50 16 8 N -0.72 -19.10 5.49 -59.91 -0.33 -19.42 16 9 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 12 N -0.93 -29.15 13.06 55.49 0.72 -28.42 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.52 6.50 7.29 -10.98 -0.08 6.42 16 18 O -0.52 -8.71 14.59 -2.12 -0.03 -8.74 16 19 C -0.06 -0.58 4.58 -29.03 -0.13 -0.71 16 20 C 0.30 3.88 6.48 -155.69 -1.01 2.87 16 21 N -0.52 -8.08 11.19 -8.16 -0.09 -8.17 16 22 C 0.26 3.72 7.69 -156.85 -1.21 2.51 16 23 C -0.07 -0.80 6.33 -91.77 -0.58 -1.38 16 24 C -0.16 -1.45 10.14 -26.69 -0.27 -1.72 16 25 C -0.16 -1.36 10.24 -26.69 -0.27 -1.64 16 26 N -0.32 -4.41 12.24 32.42 0.40 -4.01 16 27 N -0.37 -4.45 4.04 -65.10 -0.26 -4.71 16 28 C 0.10 0.65 11.33 59.84 0.68 1.33 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.35 6.44 -51.93 -0.33 0.01 16 31 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 32 H 0.09 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.09 1.16 7.42 -51.93 -0.39 0.77 16 34 H 0.37 7.03 8.75 45.56 0.40 7.42 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.39 11.11 7.54 -40.82 -0.31 10.80 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.13 1.05 7.40 -51.93 -0.38 0.66 16 40 H 0.11 0.52 7.08 -51.93 -0.37 0.15 16 41 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.09 0.31 7.10 -51.93 -0.37 -0.06 16 LS Contribution 403.75 15.07 6.08 6.08 Total: -1.00 -40.01 403.75 -8.97 -48.98 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.77 Total: 12.68 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -2.64 Total: 5.98 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -0.08 Total: -71.69 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.54 Total: -19.92 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -40.01 -8.97 -48.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332608306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.209 kcal (2) G-P(sol) polarization free energy of solvation -40.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds