Wall clock time and date at job start Tue Mar 31 2020 21:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99959 * 2 1 4 4 C 1.53005 * 109.47028 * 89.99901 * 3 2 1 5 5 H 1.09005 * 109.47310 * 305.00257 * 4 3 2 6 6 O 1.42903 * 109.46806 * 64.99877 * 4 3 2 7 7 C 1.52992 * 109.47277 * 185.00044 * 4 3 2 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46676 * 90.00727 * 13 11 9 15 15 H 1.48502 * 109.46977 * 210.00025 * 13 11 9 16 16 H 1.48494 * 109.47494 * 330.00753 * 13 11 9 17 17 C 1.34775 * 120.00474 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00178 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99399 * 359.97438 * 17 2 1 20 20 C 1.50700 * 109.46716 * 180.02562 * 19 17 2 21 21 N 1.30833 * 125.96330 * 90.02786 * 20 19 17 22 22 C 1.33240 * 109.82989 * 179.97438 * 21 20 19 23 23 C 1.50699 * 125.52745 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.50095 * 188.74577 * 23 22 21 25 25 C 1.53001 * 117.49673 * 120.08380 * 23 22 21 26 26 N 1.30714 * 108.94873 * 0.02562 * 22 21 20 27 27 N 1.34434 * 125.96071 * 269.71827 * 20 19 17 28 28 C 1.46494 * 126.82372 * 0.02562 * 27 20 19 29 29 H 1.08997 * 109.47032 * 89.99610 * 1 2 3 30 30 H 1.08997 * 109.46896 * 209.99713 * 1 2 3 31 31 H 1.08998 * 109.46684 * 329.99938 * 1 2 3 32 32 H 1.09005 * 109.47213 * 330.00487 * 3 2 1 33 33 H 1.08996 * 109.47319 * 209.99820 * 3 2 1 34 34 H 0.96702 * 113.99305 * 60.00499 * 6 4 3 35 35 H 1.09004 * 109.47330 * 60.00123 * 7 4 3 36 36 H 1.09005 * 109.47124 * 300.00327 * 7 4 3 37 37 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 38 38 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47248 * 300.00314 * 19 17 2 40 40 H 1.08993 * 109.47026 * 60.00652 * 19 17 2 41 41 H 1.09000 * 115.54876 * 334.42394 * 23 22 21 42 42 H 1.08997 * 117.49460 * 359.97438 * 24 23 22 43 43 H 1.08999 * 117.49524 * 145.02593 * 24 23 22 44 44 H 1.09004 * 117.49988 * 214.98136 * 25 23 22 45 45 H 1.08995 * 117.50118 * 359.97438 * 25 23 22 46 46 H 1.09004 * 109.47242 * 89.99919 * 28 27 20 47 47 H 1.09000 * 109.47309 * 210.00378 * 28 27 20 48 48 H 1.09003 * 109.47455 * 330.00090 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4426 5 1 1.5061 1.7549 1.9816 6 8 3.3209 0.7725 2.0814 7 6 3.1060 3.0938 1.4445 8 7 3.3507 3.5164 2.8256 9 6 3.9327 4.7301 3.0774 10 1 4.2155 5.3739 2.2576 11 6 4.1641 5.1308 4.3861 12 7 3.8245 4.3440 5.3851 13 14 4.9588 6.7861 4.7295 14 1 3.9044 7.8236 4.8609 15 1 5.7374 6.7091 5.9917 16 1 5.8661 7.1416 3.6090 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 6 2.3648 -3.6177 -0.0005 21 7 2.8637 -4.2020 1.0584 22 6 3.6952 -5.1750 0.6882 23 6 4.4624 -6.0742 1.6230 24 6 5.5200 -6.9939 1.0093 25 6 4.2035 -7.5791 1.5268 26 7 3.7375 -5.2233 -0.6174 27 7 2.8737 -4.2212 -1.0886 28 6 2.5871 -3.8957 -2.4879 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6084 2.0285 -0.5138 33 1 3.1499 1.1385 -0.5138 34 1 4.1837 0.6812 1.6542 35 1 2.4436 3.8093 0.9571 36 1 4.0524 3.0493 0.9054 37 1 3.1004 2.9366 3.5618 38 1 3.9865 4.6238 6.2995 39 1 0.7591 -2.5302 0.8896 40 1 0.7586 -2.5298 -0.8903 41 1 4.6669 -5.6608 2.6106 42 1 5.6605 -6.9489 -0.0706 43 1 6.4200 -7.1859 1.5934 44 1 4.2381 -8.1558 2.4511 45 1 3.4780 -7.9187 0.7878 46 1 3.2974 -3.1474 -2.8398 47 1 2.6766 -4.7959 -3.0960 48 1 1.5741 -3.5017 -2.5693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332608306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:08 Heat of formation + Delta-G solvation = 21.600823 kcal Electronic energy + Delta-G solvation = -29184.992651 eV Core-core repulsion = 25084.456872 eV Total energy + Delta-G solvation = -4100.535779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.25333 -40.99147 -38.74067 -38.15933 -36.42227 -35.85191 -34.90915 -33.74775 -33.18736 -31.23214 -29.79912 -28.26439 -27.90828 -26.62158 -24.78226 -24.55516 -23.31736 -22.72740 -21.95003 -21.01586 -20.11238 -19.24244 -18.42095 -18.08895 -17.79061 -17.05847 -16.84293 -16.63338 -16.47181 -16.28420 -16.21457 -15.60225 -15.50282 -14.97169 -14.69478 -14.50675 -14.35699 -14.18958 -14.08208 -13.88781 -13.66123 -13.23377 -13.13275 -13.11555 -12.95441 -12.78213 -12.70530 -12.55622 -12.40860 -12.18470 -12.01670 -11.88148 -11.81813 -11.48944 -11.19683 -11.04948 -11.00876 -10.97116 -10.68975 -10.17290 -9.55155 -9.02607 -7.95650 -5.25900 0.45415 1.31307 1.45129 1.48222 1.56019 1.56986 1.64962 2.09331 2.54650 2.80497 2.96648 3.35098 3.35760 3.44432 3.47697 3.64421 3.80129 3.86779 3.97119 4.05672 4.09175 4.18302 4.22707 4.26095 4.33690 4.42271 4.51341 4.53445 4.57453 4.60028 4.71031 4.72227 4.85389 4.88444 4.90515 5.03793 5.09648 5.21200 5.24254 5.29485 5.35831 5.44294 5.49255 5.79553 6.24922 6.36348 6.77914 7.06334 7.15342 7.31140 8.08043 8.30461 9.27897 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002309 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.635614 B =12124.005912 C =13460.726394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.604 5.604 3 C 0.099 3.901 4 C 0.093 3.907 5 H 0.092 0.908 6 O -0.566 6.566 7 C 0.123 3.877 8 N -0.742 5.742 9 C -0.248 4.248 10 H 0.078 0.922 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.282 1.282 15 H -0.297 1.297 16 H -0.269 1.269 17 C 0.518 3.482 18 O -0.572 6.572 19 C -0.056 4.056 20 C 0.294 3.706 21 N -0.566 5.566 22 C 0.240 3.760 23 C -0.101 4.101 24 C -0.152 4.152 25 C -0.139 4.139 26 N -0.339 5.339 27 N -0.375 5.375 28 C 0.085 3.915 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.373 0.627 35 H 0.044 0.956 36 H 0.019 0.981 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.145 0.855 40 H 0.165 0.835 41 H 0.127 0.873 42 H 0.092 0.908 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -21.341 -19.977 31.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.336 5.336 3 C -0.025 4.025 4 C 0.032 3.968 5 H 0.110 0.890 6 O -0.372 6.372 7 C -0.004 4.004 8 N -0.385 5.385 9 C -0.380 4.380 10 H 0.096 0.904 11 C -0.272 4.272 12 N -0.621 5.621 13 Si 0.807 3.193 14 H -0.209 1.209 15 H -0.224 1.224 16 H -0.194 1.194 17 C 0.305 3.695 18 O -0.451 6.451 19 C -0.097 4.097 20 C 0.017 3.983 21 N -0.294 5.294 22 C -0.041 4.041 23 C -0.122 4.122 24 C -0.190 4.190 25 C -0.177 4.177 26 N -0.168 5.168 27 N -0.165 5.165 28 C -0.056 4.056 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.093 0.907 34 H 0.220 0.780 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.163 0.837 40 H 0.183 0.817 41 H 0.145 0.855 42 H 0.110 0.890 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.123 0.877 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.329 -21.622 -19.872 31.130 hybrid contribution 0.971 1.244 0.455 1.642 sum -9.358 -20.378 -19.417 29.662 Atomic orbital electron populations 1.22267 0.76333 1.05033 1.04329 1.47730 1.08657 1.04545 1.72667 1.22041 0.98925 0.86024 0.95556 1.22487 0.93313 0.86879 0.94075 0.89043 1.86548 1.29524 1.63021 1.58079 1.21455 0.97530 0.94807 0.86653 1.42476 1.73756 1.19378 1.02862 1.19676 1.31089 0.95059 0.92135 0.90377 1.25675 1.03428 1.02532 0.95554 1.69862 1.55002 1.38906 0.98364 0.85074 0.77983 0.79243 0.77033 1.20915 1.22368 1.19355 1.20490 0.87500 0.85759 0.75723 1.90730 1.16043 1.87652 1.50703 1.20393 0.94821 0.84582 1.09938 1.23858 0.96257 0.95663 0.82491 1.70215 1.16224 1.12033 1.30975 1.23538 0.95661 0.94933 0.89942 1.20234 1.03345 0.90748 0.97837 1.23088 0.93829 1.00518 1.01528 1.23096 0.99101 0.91352 1.04163 1.77801 1.14974 1.12004 1.12034 1.50357 1.32233 1.24824 1.09064 1.22364 1.04397 1.03726 0.75071 0.88916 0.89076 0.90324 0.86134 0.90686 0.78001 0.93859 0.96301 0.79460 0.94030 0.83745 0.81724 0.85496 0.88995 0.85887 0.85430 0.89107 0.90402 0.87675 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.24 127.77 1.31 1.83 16 2 N -0.60 -11.22 2.86 -846.74 -2.42 -13.64 16 3 C 0.10 2.24 5.11 86.38 0.44 2.68 16 4 C 0.09 3.03 3.30 30.59 0.10 3.14 16 5 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 6 O -0.57 -22.81 11.95 -141.64 -1.69 -24.50 16 7 C 0.12 4.86 5.92 86.38 0.51 5.37 16 8 N -0.74 -39.48 5.49 -343.45 -1.89 -41.36 16 9 C -0.25 -14.29 9.99 84.04 0.84 -13.45 16 10 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 11 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 12 N -0.97 -62.23 13.06 21.65 0.28 -61.94 16 13 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 15 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 C 0.52 12.06 7.29 87.66 0.64 12.70 16 18 O -0.57 -19.45 14.59 4.33 0.06 -19.38 16 19 C -0.06 -0.87 4.58 29.10 0.13 -0.74 16 20 C 0.29 7.36 6.48 138.22 0.90 8.25 16 21 N -0.57 -18.09 11.19 -179.72 -2.01 -20.10 16 22 C 0.24 7.21 7.69 138.63 1.07 8.27 16 23 C -0.10 -2.38 6.33 -11.54 -0.07 -2.46 16 24 C -0.15 -2.75 10.14 30.62 0.31 -2.43 16 25 C -0.14 -2.31 10.24 30.62 0.31 -2.00 16 26 N -0.34 -9.64 12.24 -51.33 -0.63 -10.27 16 27 N -0.37 -8.64 4.04 -359.87 -1.45 -10.09 16 28 C 0.08 0.97 11.33 127.77 1.45 2.42 16 29 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.09 0.47 6.44 -2.39 -0.02 0.46 16 31 H 0.08 0.73 8.07 -2.39 -0.02 0.71 16 32 H 0.12 1.94 8.07 -2.38 -0.02 1.92 16 33 H 0.07 1.93 7.42 -2.39 -0.02 1.91 16 34 H 0.37 14.73 8.75 -74.06 -0.65 14.08 16 35 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.37 21.91 7.54 -92.71 -0.70 21.21 16 38 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.14 1.92 7.40 -2.39 -0.02 1.90 16 40 H 0.17 0.70 7.08 -2.39 -0.02 0.69 16 41 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.09 1.86 7.88 -2.39 -0.02 1.84 16 43 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 46 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.13 0.38 7.10 -2.39 -0.02 0.37 16 Total: -1.00 -91.66 403.75 0.33 -91.34 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: -0.36 Total: 41.29 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 8.40 Total: 19.30 kcal Atomic # 7 Polarization: -149.29 SS G_CDS: -8.11 Total: -157.40 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -1.63 Total: -43.88 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -91.66 0.33 -91.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332608306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.938 kcal (2) G-P(sol) polarization free energy of solvation -91.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds