Wall clock time and date at job start Tue Mar 31 2020 21:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 120.00164 * 2 1 4 4 C 1.52995 * 109.47428 * 269.99980 * 3 2 1 5 5 O 1.42902 * 109.46910 * 64.99592 * 4 3 2 6 6 C 1.42900 * 114.00110 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47277 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47269 * 64.99791 * 7 6 5 9 9 C 1.36935 * 120.00108 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00022 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00083 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99976 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99939 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47097 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47091 * 119.99924 * 13 11 9 16 16 H 1.48504 * 109.47013 * 239.99687 * 13 11 9 17 17 C 1.34774 * 120.00103 * 179.97438 * 2 1 3 18 18 O 1.21594 * 120.00010 * 174.47217 * 17 2 1 19 19 C 1.47519 * 119.99950 * 354.74346 * 17 2 1 20 20 C 1.36594 * 125.77229 * 173.62965 * 19 17 2 21 21 N 1.34815 * 106.84152 * 180.02562 * 20 19 17 22 22 C 1.46497 * 126.59404 * 179.97438 * 21 20 19 23 23 C 1.53787 * 113.61598 * 14.13972 * 22 21 20 24 24 C 1.53952 * 87.01873 * 220.04660 * 23 22 21 25 25 C 1.53774 * 87.11405 * 25.36237 * 24 23 22 26 26 N 1.40206 * 106.81048 * 0.02562 * 21 20 19 27 27 N 1.28763 * 108.36516 * 359.72211 * 26 21 20 28 28 H 1.09005 * 109.47284 * 265.30672 * 1 2 3 29 29 H 1.09002 * 109.47334 * 25.29976 * 1 2 3 30 30 H 1.09000 * 109.47051 * 145.30421 * 1 2 3 31 31 H 1.08998 * 109.46991 * 30.00025 * 3 2 1 32 32 H 1.09003 * 109.47377 * 149.99458 * 3 2 1 33 33 H 1.08990 * 109.47376 * 184.99674 * 4 3 2 34 34 H 1.09001 * 109.47163 * 305.00525 * 4 3 2 35 35 H 1.09008 * 109.46986 * 300.00094 * 6 5 4 36 36 H 1.09003 * 109.47061 * 59.99896 * 6 5 4 37 37 H 1.08997 * 109.47082 * 185.00132 * 7 6 5 38 38 H 1.08998 * 109.46562 * 304.99984 * 7 6 5 39 39 H 0.97003 * 119.99697 * 0.02562 * 8 7 6 40 40 H 0.96998 * 120.00087 * 180.02562 * 12 11 9 41 41 H 1.08003 * 126.57710 * 0.02562 * 20 19 17 42 42 H 1.09004 * 112.84937 * 145.33598 * 22 21 20 43 43 H 1.09003 * 113.61265 * 334.56864 * 23 22 21 44 44 H 1.08999 * 113.61272 * 105.46677 * 23 22 21 45 45 H 1.08999 * 113.53922 * 270.80859 * 24 23 22 46 46 H 1.09003 * 113.74476 * 139.94277 * 24 23 22 47 47 H 1.08999 * 113.61870 * 220.09320 * 25 24 23 48 48 H 1.09001 * 113.61567 * 89.18485 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 8 1.2060 1.9936 -2.0813 6 6 1.3324 2.4165 -3.4405 7 6 -0.0567 2.6908 -4.0205 8 7 -0.6647 3.8229 -3.3172 9 6 -1.9170 4.2532 -3.6663 10 1 -2.4562 3.7582 -4.4603 11 6 -2.4929 5.3263 -3.0002 12 7 -1.8351 5.9306 -2.0335 13 14 -4.2008 5.9137 -3.4769 14 1 -4.7215 5.0741 -4.5856 15 1 -5.1067 5.8047 -2.3052 16 1 -4.1318 7.3297 -3.9192 17 6 2.1388 -1.1672 0.0005 18 8 3.3505 -1.1696 -0.1009 19 6 1.4059 -2.4420 0.1181 20 6 1.9513 -3.6896 0.0091 21 7 0.9458 -4.5716 0.1784 22 6 1.0506 -6.0324 0.1448 23 6 2.4966 -6.5485 0.2326 24 6 2.0991 -7.6021 -0.8172 25 6 1.0076 -6.6206 -1.2755 26 7 -0.2196 -3.8218 0.3916 27 7 0.0894 -2.5724 0.3550 28 1 -0.3634 -0.0841 1.0243 29 1 -0.3634 0.9291 -0.4392 30 1 -0.3633 -0.8449 -0.5850 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 3.0732 2.6064 -1.4437 34 1 2.9642 0.9131 -1.9815 35 1 1.9300 3.3271 -3.4836 36 1 1.8207 1.6335 -4.0207 37 1 0.0326 2.9271 -5.0808 38 1 -0.6830 1.8073 -3.8966 39 1 -0.1802 4.2678 -2.6042 40 1 -2.2377 6.6803 -1.5678 41 1 2.9889 -3.9244 -0.1769 42 1 0.3692 -6.5218 0.8408 43 1 3.2378 -5.8338 -0.1250 44 1 2.7504 -6.9728 1.2040 45 1 1.7055 -8.5216 -0.3838 46 1 2.8668 -7.7836 -1.5694 47 1 0.0612 -7.1030 -1.5198 48 1 1.3410 -5.9256 -2.0462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333224557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:54 Heat of formation + Delta-G solvation = 66.212346 kcal Electronic energy + Delta-G solvation = -28979.698497 eV Core-core repulsion = 24881.097218 eV Total energy + Delta-G solvation = -4098.601279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.53252 -39.79805 -39.18086 -37.60992 -35.53465 -34.31581 -33.41277 -31.63451 -31.14611 -29.69067 -27.56271 -26.66169 -26.48448 -26.26046 -24.02311 -23.42796 -22.67010 -22.18463 -21.05975 -20.17039 -19.82305 -18.03682 -17.09099 -16.77187 -16.56895 -16.43582 -16.01351 -15.94423 -15.44690 -15.09649 -14.90096 -14.47156 -14.04767 -13.85713 -13.63343 -13.30824 -13.19854 -12.97545 -12.89454 -12.80206 -12.64670 -12.47235 -12.38093 -12.01791 -11.69047 -11.60162 -11.54835 -11.35505 -11.25861 -10.91633 -10.83165 -10.75269 -10.47730 -10.40077 -10.07743 -9.92358 -9.63828 -9.47794 -9.14247 -8.80687 -8.53464 -6.81032 -5.66851 -2.94530 0.89485 1.59211 1.72498 2.98900 3.21680 3.46394 3.49427 3.54752 3.57182 3.68130 3.97645 4.00482 4.02689 4.10660 4.35694 4.58442 4.67688 4.72508 4.84939 4.90975 5.03428 5.12779 5.19135 5.22218 5.26573 5.28093 5.43979 5.53757 5.57854 5.59869 5.65506 5.67705 5.77149 5.80640 5.91362 5.99590 6.04724 6.11322 6.39909 6.42565 6.60166 6.68107 6.83624 7.38481 7.68571 7.75423 7.78609 8.12313 8.51891 9.63430 10.22479 10.58673 11.56104 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.002191 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.266099 B =12776.674571 C =13479.994513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.587 5.587 3 C 0.121 3.879 4 C 0.045 3.955 5 O -0.370 6.370 6 C 0.059 3.941 7 C 0.155 3.845 8 N -0.727 5.727 9 C -0.236 4.236 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.293 1.293 17 C 0.600 3.400 18 O -0.550 6.550 19 C -0.095 4.095 20 C 0.090 3.910 21 N -0.351 5.351 22 C 0.121 3.879 23 C -0.147 4.147 24 C -0.136 4.136 25 C -0.146 4.146 26 N -0.069 5.069 27 N -0.197 5.197 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.031 0.969 38 H 0.026 0.974 39 H 0.387 0.613 40 H 0.253 0.747 41 H 0.200 0.800 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.707 -28.279 5.703 31.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.317 5.317 3 C -0.002 4.002 4 C -0.033 4.033 5 O -0.289 6.289 6 C -0.018 4.018 7 C 0.027 3.973 8 N -0.371 5.371 9 C -0.367 4.367 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.581 5.581 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.220 1.220 17 C 0.386 3.614 18 O -0.428 6.428 19 C -0.234 4.234 20 C -0.067 4.067 21 N -0.136 5.136 22 C 0.020 3.980 23 C -0.186 4.186 24 C -0.174 4.174 25 C -0.184 4.184 26 N -0.048 5.048 27 N -0.070 5.070 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.221 0.779 40 H 0.063 0.937 41 H 0.217 0.783 42 H 0.152 0.848 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.464 -28.355 5.934 31.155 hybrid contribution 0.381 0.463 -0.330 0.685 sum 11.845 -27.892 5.604 30.817 Atomic orbital electron populations 1.22085 0.77159 1.04622 1.02019 1.47573 1.08404 1.04906 1.70857 1.21616 0.98112 0.84563 0.95885 1.22846 0.87591 0.99040 0.93837 1.88016 1.27772 1.87483 1.25579 1.22764 0.99190 0.97342 0.82459 1.20684 0.90312 0.91888 0.94432 1.42289 1.17713 1.34793 1.42333 1.19281 0.92642 1.10567 1.14210 0.91257 1.24730 0.98600 0.99007 0.98819 1.69684 1.37615 1.24908 1.25892 0.86128 0.84423 0.78226 0.77496 1.20635 1.21898 1.22009 1.16841 0.85899 0.81974 0.76691 1.90771 1.13001 1.86955 1.52076 1.21422 0.90949 0.94788 1.16276 1.23175 0.96442 0.88707 0.98376 1.50576 1.07074 1.08081 1.47838 1.23439 1.00459 0.73449 1.00667 1.23509 0.94331 0.99070 1.01664 1.22743 0.98859 0.97032 0.98717 1.23451 1.01036 0.98724 0.95213 1.82038 1.04914 0.96179 1.21684 1.74901 1.12272 1.09905 1.09941 0.92595 0.89287 0.90143 0.88845 0.88697 0.92564 0.93454 0.93436 0.94110 0.95172 0.95656 0.77923 0.93696 0.78288 0.84821 0.88554 0.89302 0.88992 0.89712 0.89528 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 9.07 59.84 0.54 1.78 16 2 N -0.59 -8.57 2.84 -182.82 -0.52 -9.09 16 3 C 0.12 1.65 5.75 -4.04 -0.02 1.63 16 4 C 0.04 0.66 6.28 37.16 0.23 0.90 16 5 O -0.37 -6.74 9.20 -35.23 -0.32 -7.06 16 6 C 0.06 1.06 6.07 37.16 0.23 1.28 16 7 C 0.15 3.31 6.65 -4.04 -0.03 3.28 16 8 N -0.73 -19.32 5.55 -59.91 -0.33 -19.65 16 9 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 13 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 16 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 17 C 0.60 8.78 7.65 -12.48 -0.10 8.69 16 18 O -0.55 -8.76 16.51 5.28 0.09 -8.67 16 19 C -0.10 -1.24 6.62 -83.55 -0.55 -1.80 16 20 C 0.09 0.87 10.49 -16.83 -0.18 0.69 16 21 N -0.35 -3.19 3.83 -53.77 -0.21 -3.40 16 22 C 0.12 0.62 5.05 -67.12 -0.34 0.28 16 23 C -0.15 -0.43 7.47 -25.83 -0.19 -0.62 16 24 C -0.14 -0.30 8.09 -25.83 -0.21 -0.51 16 25 C -0.15 -0.60 7.88 -25.92 -0.20 -0.81 16 26 N -0.07 -0.87 13.78 60.35 0.83 -0.04 16 27 N -0.20 -2.74 9.06 32.84 0.30 -2.44 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.09 1.49 7.21 -51.93 -0.37 1.11 16 30 H 0.08 1.23 5.86 -51.93 -0.30 0.92 16 31 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 32 H 0.09 1.18 7.50 -51.93 -0.39 0.79 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.39 10.87 7.67 -40.82 -0.31 10.55 16 40 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.20 1.33 6.78 -52.48 -0.36 0.97 16 42 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.28 6.39 -51.93 -0.33 -0.06 16 44 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 46 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -35.77 398.72 -7.05 -42.82 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.53 Total: 4.51 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.06 Total: 7.24 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: 0.80 Total: -62.84 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.24 Total: -15.74 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.77 -7.05 -42.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333224557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.030 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds