Wall clock time and date at job start Tue Mar 31 2020 21:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 120.00164 * 2 1 4 4 C 1.52995 * 109.47428 * 269.99980 * 3 2 1 5 5 O 1.42902 * 109.46910 * 64.99592 * 4 3 2 6 6 C 1.42900 * 114.00110 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47277 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47269 * 64.99791 * 7 6 5 9 9 C 1.36935 * 120.00108 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00022 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00083 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99976 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99939 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47097 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47091 * 119.99924 * 13 11 9 16 16 H 1.48504 * 109.47013 * 239.99687 * 13 11 9 17 17 C 1.34774 * 120.00103 * 179.97438 * 2 1 3 18 18 O 1.21594 * 120.00010 * 174.47217 * 17 2 1 19 19 C 1.47519 * 119.99950 * 354.74346 * 17 2 1 20 20 C 1.36594 * 125.77229 * 173.62965 * 19 17 2 21 21 N 1.34815 * 106.84152 * 180.02562 * 20 19 17 22 22 C 1.46497 * 126.59404 * 179.97438 * 21 20 19 23 23 C 1.53787 * 113.61598 * 14.13972 * 22 21 20 24 24 C 1.53952 * 87.01873 * 220.04660 * 23 22 21 25 25 C 1.53774 * 87.11405 * 25.36237 * 24 23 22 26 26 N 1.40206 * 106.81048 * 0.02562 * 21 20 19 27 27 N 1.28763 * 108.36516 * 359.72211 * 26 21 20 28 28 H 1.09005 * 109.47284 * 265.30672 * 1 2 3 29 29 H 1.09002 * 109.47334 * 25.29976 * 1 2 3 30 30 H 1.09000 * 109.47051 * 145.30421 * 1 2 3 31 31 H 1.08998 * 109.46991 * 30.00025 * 3 2 1 32 32 H 1.09003 * 109.47377 * 149.99458 * 3 2 1 33 33 H 1.08990 * 109.47376 * 184.99674 * 4 3 2 34 34 H 1.09001 * 109.47163 * 305.00525 * 4 3 2 35 35 H 1.09008 * 109.46986 * 300.00094 * 6 5 4 36 36 H 1.09003 * 109.47061 * 59.99896 * 6 5 4 37 37 H 1.08997 * 109.47082 * 185.00132 * 7 6 5 38 38 H 1.08998 * 109.46562 * 304.99984 * 7 6 5 39 39 H 0.97003 * 119.99697 * 0.02562 * 8 7 6 40 40 H 0.96998 * 120.00087 * 180.02562 * 12 11 9 41 41 H 1.08003 * 126.57710 * 0.02562 * 20 19 17 42 42 H 1.09004 * 112.84937 * 145.33598 * 22 21 20 43 43 H 1.09003 * 113.61265 * 334.56864 * 23 22 21 44 44 H 1.08999 * 113.61272 * 105.46677 * 23 22 21 45 45 H 1.08999 * 113.53922 * 270.80859 * 24 23 22 46 46 H 1.09003 * 113.74476 * 139.94277 * 24 23 22 47 47 H 1.08999 * 113.61870 * 220.09320 * 25 24 23 48 48 H 1.09001 * 113.61567 * 89.18485 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 8 1.2060 1.9936 -2.0813 6 6 1.3324 2.4165 -3.4405 7 6 -0.0567 2.6908 -4.0205 8 7 -0.6647 3.8229 -3.3172 9 6 -1.9170 4.2532 -3.6663 10 1 -2.4562 3.7582 -4.4603 11 6 -2.4929 5.3263 -3.0002 12 7 -1.8351 5.9306 -2.0335 13 14 -4.2008 5.9137 -3.4769 14 1 -4.7215 5.0741 -4.5856 15 1 -5.1067 5.8047 -2.3052 16 1 -4.1318 7.3297 -3.9192 17 6 2.1388 -1.1672 0.0005 18 8 3.3505 -1.1696 -0.1009 19 6 1.4059 -2.4420 0.1181 20 6 1.9513 -3.6896 0.0091 21 7 0.9458 -4.5716 0.1784 22 6 1.0506 -6.0324 0.1448 23 6 2.4966 -6.5485 0.2326 24 6 2.0991 -7.6021 -0.8172 25 6 1.0076 -6.6206 -1.2755 26 7 -0.2196 -3.8218 0.3916 27 7 0.0894 -2.5724 0.3550 28 1 -0.3634 -0.0841 1.0243 29 1 -0.3634 0.9291 -0.4392 30 1 -0.3633 -0.8449 -0.5850 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 3.0732 2.6064 -1.4437 34 1 2.9642 0.9131 -1.9815 35 1 1.9300 3.3271 -3.4836 36 1 1.8207 1.6335 -4.0207 37 1 0.0326 2.9271 -5.0808 38 1 -0.6830 1.8073 -3.8966 39 1 -0.1802 4.2678 -2.6042 40 1 -2.2377 6.6803 -1.5678 41 1 2.9889 -3.9244 -0.1769 42 1 0.3692 -6.5218 0.8408 43 1 3.2378 -5.8338 -0.1250 44 1 2.7504 -6.9728 1.2040 45 1 1.7055 -8.5216 -0.3838 46 1 2.8668 -7.7836 -1.5694 47 1 0.0612 -7.1030 -1.5198 48 1 1.3410 -5.9256 -2.0462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333224557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:52 Heat of formation + Delta-G solvation = 41.349754 kcal Electronic energy + Delta-G solvation = -28980.776620 eV Core-core repulsion = 24881.097218 eV Total energy + Delta-G solvation = -4099.679402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.36764 -40.79045 -39.70375 -38.97470 -36.84305 -36.14137 -34.19019 -33.41407 -32.32273 -30.94757 -29.27849 -27.57280 -27.06225 -26.81479 -25.53626 -24.99017 -23.39539 -23.15991 -22.77499 -20.87136 -20.47455 -19.23670 -18.87246 -17.87662 -17.59326 -17.24071 -17.15803 -16.91032 -16.58939 -16.23402 -16.14770 -15.70334 -15.47692 -15.25498 -14.73615 -14.52087 -14.28222 -14.13094 -13.84301 -13.75130 -13.64300 -13.45250 -13.25486 -13.21507 -13.02860 -12.82339 -12.76270 -12.59310 -12.46588 -12.09493 -11.98633 -11.90488 -11.76303 -11.66734 -11.49208 -11.21591 -11.11680 -10.96485 -10.48000 -10.37373 -9.69374 -8.96578 -7.91615 -5.20092 0.10229 0.58378 1.06651 1.48054 1.49582 1.59513 1.92085 2.15676 2.58054 2.80610 3.02277 3.16773 3.37497 3.41958 3.51454 3.72227 3.74965 3.87344 3.97058 4.07897 4.13309 4.16205 4.28524 4.38059 4.42455 4.47623 4.50290 4.57494 4.59141 4.63861 4.67200 4.73342 4.75083 4.86934 4.89781 4.93228 5.00328 5.05536 5.14079 5.17381 5.27980 5.45265 5.50676 5.51718 6.22542 6.29732 6.39271 6.80784 7.04821 7.36567 8.12340 8.37335 9.32124 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.002191 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.266099 B =12776.674571 C =13479.994513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.592 5.592 3 C 0.120 3.880 4 C 0.046 3.954 5 O -0.394 6.394 6 C 0.067 3.933 7 C 0.151 3.849 8 N -0.739 5.739 9 C -0.244 4.244 10 H 0.074 0.926 11 C -0.077 4.077 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.267 1.267 15 H -0.293 1.293 16 H -0.292 1.292 17 C 0.600 3.400 18 O -0.566 6.566 19 C -0.124 4.124 20 C 0.109 3.891 21 N -0.336 5.336 22 C 0.103 3.897 23 C -0.140 4.140 24 C -0.123 4.123 25 C -0.148 4.148 26 N -0.096 5.096 27 N -0.221 5.221 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.019 0.981 39 H 0.376 0.624 40 H 0.250 0.750 41 H 0.232 0.768 42 H 0.145 0.855 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.646 -30.386 5.240 33.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.322 5.322 3 C -0.002 4.002 4 C -0.031 4.031 5 O -0.314 6.314 6 C -0.009 4.009 7 C 0.024 3.976 8 N -0.382 5.382 9 C -0.376 4.376 10 H 0.092 0.908 11 C -0.269 4.269 12 N -0.618 5.618 13 Si 0.803 3.197 14 H -0.191 1.191 15 H -0.221 1.221 16 H -0.219 1.219 17 C 0.387 3.613 18 O -0.445 6.445 19 C -0.264 4.264 20 C -0.050 4.050 21 N -0.120 5.120 22 C 0.004 3.996 23 C -0.179 4.179 24 C -0.161 4.161 25 C -0.187 4.187 26 N -0.075 5.075 27 N -0.094 5.094 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.248 0.752 42 H 0.162 0.838 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.393 -30.519 5.444 33.386 hybrid contribution 0.154 0.954 -0.209 0.989 sum 12.547 -29.564 5.235 32.540 Atomic orbital electron populations 1.21857 0.77583 1.02977 1.01985 1.47638 1.08186 1.05417 1.70959 1.21682 0.98709 0.84297 0.95511 1.22962 0.86480 0.99722 0.93937 1.87989 1.29882 1.87653 1.25848 1.22634 0.96921 0.98536 0.82829 1.20854 0.92044 0.89812 0.94848 1.42474 1.17275 1.36012 1.42448 1.19678 0.93634 1.10372 1.13907 0.90761 1.25581 1.02593 0.99573 0.99202 1.69840 1.39321 1.25479 1.27209 0.85058 0.79682 0.77600 0.77321 1.19112 1.22067 1.21900 1.17021 0.85808 0.82353 0.76076 1.90746 1.13490 1.87270 1.53002 1.21440 0.91112 0.95286 1.18535 1.23593 0.97568 0.87610 0.96187 1.50897 1.05923 1.09380 1.45817 1.24052 1.02704 0.71096 1.01794 1.23557 0.92564 0.99035 1.02716 1.22733 0.98014 0.96890 0.98420 1.23473 1.02005 0.99049 0.94156 1.81943 1.06579 0.96131 1.22831 1.74851 1.12976 1.10789 1.10791 0.92046 0.91578 0.90681 0.89019 0.87200 0.91057 0.93314 0.93155 0.91126 0.93893 0.96339 0.79210 0.94071 0.75206 0.83774 0.88233 0.87935 0.87564 0.88963 0.89417 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.04 9.07 127.77 1.16 4.20 16 2 N -0.59 -17.39 2.84 -850.57 -2.41 -19.81 16 3 C 0.12 3.27 5.75 86.38 0.50 3.76 16 4 C 0.05 1.34 6.28 71.98 0.45 1.79 16 5 O -0.39 -14.31 9.20 -148.98 -1.37 -15.68 16 6 C 0.07 2.33 6.07 71.98 0.44 2.77 16 7 C 0.15 6.40 6.65 86.38 0.57 6.98 16 8 N -0.74 -39.62 5.55 -343.46 -1.91 -41.53 16 9 C -0.24 -14.20 9.99 84.03 0.84 -13.36 16 10 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 11 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 12 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 13 Si 0.97 47.57 29.55 68.60 2.03 49.60 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 15 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 16 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 17 C 0.60 17.40 7.65 86.69 0.66 18.06 16 18 O -0.57 -17.50 16.51 -4.01 -0.07 -17.57 16 19 C -0.12 -3.21 6.62 40.82 0.27 -2.94 16 20 C 0.11 1.96 10.49 83.85 0.88 2.84 16 21 N -0.34 -5.73 3.83 -324.03 -1.24 -6.97 16 22 C 0.10 0.86 5.05 45.52 0.23 1.09 16 23 C -0.14 -0.41 7.47 31.18 0.23 -0.18 16 24 C -0.12 -0.19 8.09 31.18 0.25 0.06 16 25 C -0.15 -0.97 7.88 31.12 0.25 -0.73 16 26 N -0.10 -2.42 13.78 37.02 0.51 -1.91 16 27 N -0.22 -6.26 9.06 -50.00 -0.45 -6.71 16 28 H 0.06 1.77 8.13 -2.38 -0.02 1.75 16 29 H 0.07 2.31 7.21 -2.39 -0.02 2.30 16 30 H 0.07 2.38 5.86 -2.39 -0.01 2.37 16 31 H 0.09 2.50 8.07 -2.39 -0.02 2.48 16 32 H 0.11 2.65 7.50 -2.39 -0.02 2.63 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.38 21.51 7.67 -92.71 -0.71 20.80 16 40 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.23 2.48 6.78 -2.91 -0.02 2.46 16 42 H 0.14 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.10 0.26 6.39 -2.39 -0.02 0.24 16 44 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -77.31 398.72 2.83 -74.48 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.26 Total: 26.60 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 7.20 Total: 20.21 kcal Atomic # 7 Polarization: -132.42 SS G_CDS: -5.22 Total: -137.64 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.44 Total: -33.25 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -77.31 2.83 -74.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333224557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.825 kcal (2) G-P(sol) polarization free energy of solvation -77.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds