Wall clock time and date at job start Tue Mar 31 2020 21:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00357 * 2 1 4 4 C 1.53002 * 109.47429 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47269 * 185.01366 * 4 3 2 6 6 C 1.36745 * 127.14038 * 95.27771 * 5 4 3 7 7 C 1.50701 * 126.34351 * 359.97438 * 6 5 4 8 8 C 1.53000 * 109.47060 * 269.71873 * 7 6 5 9 9 C 1.50701 * 109.46677 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00476 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99596 * 179.72255 * 9 8 7 12 12 N 1.31519 * 120.00050 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 120.00216 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47083 * 89.99890 * 13 11 9 15 15 H 1.48499 * 109.46836 * 209.99983 * 13 11 9 16 16 H 1.48498 * 109.46714 * 329.99738 * 13 11 9 17 17 N 1.30286 * 107.30564 * 179.73205 * 6 5 4 18 18 N 1.28534 * 110.05814 * 0.26169 * 17 6 5 19 19 C 1.31213 * 109.85728 * 359.97438 * 18 17 6 20 20 N 1.38580 * 126.47415 * 180.02562 * 19 18 17 21 21 C 1.45758 * 111.00065 * 60.88871 * 20 19 18 22 22 C 1.51680 * 113.93874 * 167.27104 * 21 20 19 23 23 C 1.53106 * 110.75853 * 66.76549 * 22 21 20 24 24 N 1.47253 * 108.40382 * 274.41098 * 23 22 21 25 25 C 1.33608 * 119.84258 * 69.99358 * 24 23 22 26 26 O 1.21287 * 119.88000 * 180.53856 * 25 24 23 27 27 C 1.46882 * 111.00025 * 295.06413 * 20 19 18 28 28 H 1.08999 * 109.47030 * 299.99882 * 1 2 3 29 29 H 1.09006 * 109.47072 * 59.99486 * 1 2 3 30 30 H 1.08997 * 109.47052 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46611 * 60.00279 * 3 2 1 32 32 H 1.08998 * 109.47305 * 300.00551 * 3 2 1 33 33 H 1.09003 * 109.46592 * 65.01126 * 4 3 2 34 34 H 1.09000 * 109.47280 * 305.01637 * 4 3 2 35 35 H 1.08999 * 109.46828 * 149.71799 * 7 6 5 36 36 H 1.09005 * 109.46791 * 29.71771 * 7 6 5 37 37 H 1.08990 * 109.47510 * 59.99979 * 8 7 6 38 38 H 1.09001 * 109.46796 * 299.99472 * 8 7 6 39 39 H 0.97000 * 119.99996 * 179.97438 * 12 11 9 40 40 H 1.09006 * 108.58336 * 288.42021 * 21 20 19 41 41 H 1.08999 * 108.58762 * 46.11177 * 21 20 19 42 42 H 1.09005 * 109.21574 * 306.43540 * 22 21 20 43 43 H 1.09000 * 109.18457 * 187.07871 * 22 21 20 44 44 H 1.08996 * 109.67936 * 154.68499 * 23 22 21 45 45 H 1.08996 * 109.68005 * 34.13768 * 23 22 21 46 46 H 0.97001 * 120.07724 * 249.97132 * 24 23 22 47 47 H 1.08993 * 109.60103 * 330.56021 * 27 20 19 48 48 H 1.09003 * 109.60080 * 90.87593 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1309 2.5176 0.1213 6 6 4.5502 3.1338 1.2678 7 6 4.4865 2.5652 2.6620 8 6 3.1547 2.9502 3.3094 9 6 3.0913 2.3821 4.7038 10 1 3.9180 1.8039 5.0895 11 6 1.9801 2.6048 5.4890 12 7 1.9245 2.1086 6.7057 13 14 0.5535 3.6113 4.8247 14 1 -0.4135 2.7115 4.1461 15 1 -0.1238 4.3102 5.9464 16 1 1.0638 4.6123 3.8537 17 7 5.0197 4.3015 0.9307 18 7 4.9214 4.4660 -0.3402 19 6 4.3799 3.4031 -0.8867 20 7 4.1158 3.2132 -2.2338 21 6 5.3426 3.2657 -3.0190 22 6 5.1834 2.7694 -4.4435 23 6 4.2775 3.7067 -5.2466 24 7 2.8782 3.3082 -5.0197 25 6 2.3136 3.5134 -3.8263 26 8 1.1642 3.1764 -3.6357 27 6 3.1036 4.1645 -2.7109 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8462 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8637 0.7229 -0.9307 34 1 3.8508 0.5682 0.8425 35 1 5.3083 2.9657 3.2556 36 1 4.5674 1.4792 2.6154 37 1 2.3330 2.5497 2.7158 38 1 3.0739 4.0362 3.3559 39 1 1.1429 2.2656 7.2583 40 1 5.6929 4.2976 -3.0476 41 1 6.0995 2.6589 -2.5221 42 1 4.7446 1.7717 -4.4288 43 1 6.1634 2.7234 -4.9184 44 1 4.5145 3.6265 -6.3074 45 1 4.4250 4.7341 -4.9137 46 1 2.3675 2.8979 -5.7351 47 1 2.4331 4.4262 -1.8924 48 1 3.5939 5.0638 -3.0837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342989660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:24 Heat of formation + Delta-G solvation = -15.256984 kcal Electronic energy + Delta-G solvation = -30861.564592 eV Core-core repulsion = 26759.430538 eV Total energy + Delta-G solvation = -4102.134054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.22667 -41.31997 -39.15235 -38.71923 -36.62019 -36.50057 -35.69607 -33.87530 -32.67830 -31.05161 -30.79076 -28.62481 -27.52316 -27.28480 -26.49033 -24.72618 -23.56597 -22.94752 -21.76766 -21.43773 -20.98952 -19.18118 -18.74772 -18.44503 -17.91100 -17.75066 -17.36091 -17.11860 -16.77542 -16.46652 -16.29711 -15.83233 -15.54237 -15.21712 -15.15757 -14.97079 -14.75774 -14.67812 -14.43675 -14.20830 -13.67990 -13.52114 -13.48540 -13.06129 -12.93263 -12.77391 -12.72424 -12.42952 -12.34974 -12.26505 -12.07565 -12.01285 -11.89361 -11.69365 -11.44922 -11.33152 -11.23604 -10.88128 -10.76972 -10.18252 -10.10950 -10.01332 -8.32594 -6.35606 0.44962 0.89823 1.27219 1.31984 1.41438 1.42064 1.64434 2.24120 2.30096 2.41640 2.81901 3.02614 3.32182 3.39289 3.48412 3.70223 3.75893 3.76471 3.84557 3.93267 4.05104 4.06055 4.21745 4.30877 4.36312 4.41349 4.41937 4.45288 4.49004 4.51380 4.63823 4.69676 4.73109 4.77282 4.84113 4.91643 4.95002 5.23826 5.28121 5.33470 5.37917 5.49347 5.58331 5.85483 5.89682 6.01515 6.14103 6.22168 6.71239 7.13845 7.28577 7.53348 8.83414 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.003660 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.388024 B = 7648.535622 C = 8520.203285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.394 6.394 3 C 0.056 3.944 4 C 0.120 3.880 5 N -0.458 5.458 6 C 0.209 3.791 7 C -0.014 4.014 8 C 0.004 3.996 9 C -0.523 4.523 10 H 0.051 0.949 11 C 0.019 3.981 12 N -0.941 5.941 13 Si 0.931 3.069 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.262 1.262 17 N -0.319 5.319 18 N -0.325 5.325 19 C 0.343 3.657 20 N -0.456 5.456 21 C 0.060 3.940 22 C -0.129 4.129 23 C 0.099 3.901 24 N -0.705 5.705 25 C 0.534 3.466 26 O -0.591 6.591 27 C 0.055 3.945 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.267 0.733 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.084 0.916 46 H 0.411 0.589 47 H 0.077 0.923 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 -0.874 -30.285 30.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.312 6.312 3 C -0.022 4.022 4 C -0.003 4.003 5 N -0.151 5.151 6 C -0.059 4.059 7 C -0.054 4.054 8 C -0.034 4.034 9 C -0.561 4.561 10 H 0.069 0.931 11 C -0.179 4.179 12 N -0.581 5.581 13 Si 0.755 3.245 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.186 1.186 17 N -0.159 5.159 18 N -0.169 5.169 19 C -0.013 4.013 20 N -0.184 5.184 21 C -0.066 4.066 22 C -0.168 4.168 23 C -0.024 4.024 24 N -0.357 5.357 25 C 0.318 3.682 26 O -0.470 6.470 27 C -0.075 4.075 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.131 0.869 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.102 0.898 46 H 0.249 0.751 47 H 0.096 0.904 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.360 -0.246 -29.868 30.346 hybrid contribution -1.592 0.020 0.367 1.633 sum 3.768 -0.226 -29.500 29.741 Atomic orbital electron populations 1.22953 0.79042 1.04489 1.00295 1.87725 1.21682 1.26272 1.95547 1.22605 0.93337 0.85794 1.00417 1.21660 0.91744 0.79659 1.07203 1.46301 1.46161 1.16169 1.06499 1.25335 0.98494 0.91089 0.90986 1.20040 1.00478 1.00829 0.84050 1.19401 0.93168 0.96259 0.94581 1.21275 1.03514 1.33155 0.98198 0.93064 1.25731 1.00943 0.96411 0.94864 1.70015 1.31014 1.47124 1.09977 0.85951 0.79976 0.79929 0.78611 1.19062 1.20526 1.18590 1.74026 1.21303 1.14873 1.05689 1.74481 1.19552 1.21052 1.01817 1.22202 1.02097 0.87629 0.89395 1.57425 1.13681 1.52100 0.95193 1.21951 0.87361 1.02370 0.94897 1.21918 1.03003 1.00189 0.91687 1.22213 0.77967 0.98753 1.03417 1.45971 1.15507 1.61588 1.12616 1.20220 0.85965 0.77555 0.84420 1.90753 1.20335 1.52973 1.82987 1.22399 0.93898 0.94387 0.96839 0.94531 0.93294 0.86861 0.94397 0.92763 0.85648 0.86645 0.88554 0.88643 0.96885 0.96995 0.92358 0.92204 0.90636 0.90735 0.85837 0.85109 0.89773 0.75132 0.90442 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.39 -11.60 10.70 -148.98 -1.59 -13.20 16 3 C 0.06 1.70 6.26 71.98 0.45 2.15 16 4 C 0.12 3.17 6.44 86.38 0.56 3.73 16 5 N -0.46 -14.08 2.81 -514.86 -1.45 -15.53 16 6 C 0.21 7.60 7.32 137.64 1.01 8.61 16 7 C -0.01 -0.55 5.52 29.85 0.16 -0.38 16 8 C 0.00 0.21 4.02 29.85 0.12 0.33 16 9 C -0.52 -29.28 9.66 25.60 0.25 -29.03 16 10 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 11 C 0.02 1.08 5.47 84.65 0.46 1.54 16 12 N -0.94 -58.05 13.96 21.45 0.30 -57.76 16 13 Si 0.93 45.10 27.47 68.60 1.88 46.98 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.26 -12.43 6.53 99.48 0.65 -11.78 16 17 N -0.32 -12.53 12.18 -49.54 -0.60 -13.14 16 18 N -0.33 -11.26 12.19 -58.00 -0.71 -11.97 16 19 C 0.34 10.00 6.11 260.11 1.59 11.59 16 20 N -0.46 -9.73 4.38 -714.53 -3.13 -12.86 16 21 C 0.06 0.84 4.85 86.09 0.42 1.25 16 22 C -0.13 -0.76 5.86 30.20 0.18 -0.59 16 23 C 0.10 0.39 6.50 86.27 0.56 0.95 16 24 N -0.71 -7.91 5.33 -462.00 -2.46 -10.37 16 25 C 0.53 11.22 7.46 88.06 0.66 11.88 16 26 O -0.59 -18.22 17.92 -3.05 -0.05 -18.27 16 27 C 0.05 1.17 5.24 85.78 0.45 1.62 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.32 6.86 -2.38 -0.02 1.31 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.12 2.95 7.10 -2.39 -0.02 2.93 16 35 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 36 H 0.10 3.29 7.17 -2.38 -0.02 3.28 16 37 H 0.01 0.60 6.30 -2.39 -0.02 0.58 16 38 H 0.01 0.58 7.18 -2.39 -0.02 0.57 16 39 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 40 H 0.06 0.81 7.78 -2.38 -0.02 0.79 16 41 H 0.08 1.17 7.96 -2.39 -0.02 1.15 16 42 H 0.07 0.64 8.05 -2.38 -0.02 0.62 16 43 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.08 0.30 6.77 -2.39 -0.02 0.29 16 46 H 0.41 3.66 8.92 -92.71 -0.83 2.83 16 47 H 0.08 2.12 7.75 -2.39 -0.02 2.10 16 48 H 0.11 1.70 6.68 -2.39 -0.02 1.68 16 Total: -1.00 -78.93 389.36 0.39 -78.54 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.10 Total: 11.99 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 8.11 Total: 15.59 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -8.05 Total: -121.62 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.65 Total: -31.47 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -78.93 0.39 -78.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342989660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.281 kcal (2) G-P(sol) polarization free energy of solvation -78.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds