Wall clock time and date at job start Tue Mar 31 2020 20:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45194 * 109.47340 * 2 1 4 4 C 1.34638 * 117.00214 * 179.97438 * 3 2 1 5 5 O 1.21514 * 119.99322 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00076 * 179.97438 * 4 3 2 7 7 C 1.47082 * 120.87981 * 180.02562 * 6 4 3 8 8 C 1.53239 * 108.52119 * 128.79588 * 7 6 4 9 9 N 1.46897 * 109.36464 * 53.81642 * 8 7 6 10 10 C 1.38575 * 110.99891 * 172.76030 * 9 8 7 11 11 N 1.31218 * 126.47685 * 36.37929 * 10 9 8 12 12 N 1.28524 * 109.86100 * 179.97438 * 11 10 9 13 13 C 1.30295 * 110.05604 * 359.97438 * 12 11 10 14 14 C 1.50697 * 126.34729 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47179 * 90.03133 * 14 13 12 16 16 C 1.50697 * 109.47179 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00369 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00196 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99453 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00383 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46805 * 60.00139 * 20 18 16 22 22 H 1.48497 * 109.47002 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47001 * 300.00483 * 20 18 16 24 24 N 1.36454 * 126.47105 * 216.05788 * 10 9 8 25 25 C 1.46503 * 127.13756 * 0.03632 * 24 10 9 26 26 C 1.46898 * 111.26621 * 296.93824 * 9 8 7 27 27 C 1.47076 * 120.88597 * 359.97438 * 6 4 3 28 28 H 1.09002 * 109.46622 * 60.00070 * 1 2 3 29 29 H 1.09002 * 109.47533 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47319 * 300.00828 * 1 2 3 31 31 H 1.08998 * 109.47319 * 239.99172 * 2 1 3 32 32 H 1.09010 * 109.46716 * 119.99635 * 2 1 3 33 33 H 1.09006 * 109.62855 * 9.08439 * 7 6 4 34 34 H 1.08998 * 109.62883 * 248.50556 * 7 6 4 35 35 H 1.09000 * 109.49511 * 173.79230 * 8 7 6 36 36 H 1.09001 * 109.49144 * 293.83992 * 8 7 6 37 37 H 1.09010 * 109.47073 * 210.03005 * 14 13 12 38 38 H 1.08999 * 109.47283 * 330.02633 * 14 13 12 39 39 H 1.08998 * 109.47078 * 299.99553 * 15 14 13 40 40 H 1.09001 * 109.47005 * 59.99895 * 15 14 13 41 41 H 0.96998 * 119.99436 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.46575 * 95.46112 * 25 24 10 43 43 H 1.08995 * 109.47330 * 215.45601 * 25 24 10 44 44 H 1.08998 * 109.47028 * 335.46503 * 25 24 10 45 45 H 1.09001 * 109.47633 * 303.09994 * 26 9 8 46 46 H 1.09001 * 109.50891 * 183.04700 * 26 9 8 47 47 H 1.09004 * 109.62523 * 350.92263 * 27 6 4 48 48 H 1.08999 * 109.62713 * 111.49484 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0889 0.5815 0.0005 6 7 3.8639 2.7907 0.0000 7 6 5.3189 3.0057 0.0001 8 6 5.6674 3.9770 -1.1328 9 7 4.8594 5.1961 -0.9950 10 6 5.2601 6.1627 -1.9036 11 7 5.6718 5.9556 -3.1322 12 7 5.9625 7.0764 -3.6900 13 6 5.7547 8.0570 -2.8576 14 6 5.9757 9.5224 -3.1307 15 6 4.6933 10.1346 -3.6978 16 6 4.9141 11.6002 -3.9704 17 1 5.8731 12.0502 -3.7598 18 6 3.8919 12.3667 -4.4887 19 7 2.7243 11.8186 -4.7456 20 14 4.1653 14.1835 -4.8259 21 1 5.2676 14.3443 -5.8079 22 1 2.9210 14.7773 -5.3776 23 1 4.5250 14.8731 -3.5608 24 7 5.2951 7.5102 -1.6916 25 6 4.9208 8.2231 -0.4676 26 6 3.4265 4.9040 -1.1338 27 6 2.9862 3.9708 -0.0016 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8294 2.0563 -0.1616 34 1 5.6261 3.4318 0.9551 35 1 6.7254 4.2339 -1.0791 36 1 5.4557 3.5068 -2.0931 37 1 6.2406 10.0291 -2.2026 38 1 6.7843 9.6397 -3.8522 39 1 4.4284 9.6280 -4.6259 40 1 3.8848 10.0173 -2.9763 41 1 2.0050 12.3579 -5.1099 42 1 5.8119 8.4064 0.1328 43 1 4.4566 9.1740 -0.7286 44 1 4.2159 7.6190 0.1035 45 1 3.2453 4.4211 -2.0941 46 1 2.8588 5.8330 -1.0811 47 1 1.9543 3.6593 -0.1643 48 1 3.0686 4.4898 0.9533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351095414.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:43 Heat of formation + Delta-G solvation = 9.253405 kcal Electronic energy + Delta-G solvation = -29363.052873 eV Core-core repulsion = 25261.981670 eV Total energy + Delta-G solvation = -4101.071204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.67614 -40.94698 -39.01460 -36.87230 -35.19705 -34.87868 -33.79270 -32.16223 -31.70693 -31.51676 -29.18083 -27.61836 -26.86953 -25.24660 -24.43124 -23.64333 -22.52288 -21.88436 -21.20349 -20.22905 -19.82318 -18.52700 -17.45941 -17.02660 -16.89952 -16.53567 -16.14224 -15.79387 -15.27585 -15.19531 -15.05414 -14.62285 -14.51811 -13.98812 -13.79846 -13.45729 -13.20499 -13.18344 -13.12473 -12.81392 -12.57489 -12.31971 -12.27217 -12.06866 -11.94100 -11.77244 -11.59998 -11.38487 -11.16618 -11.00456 -10.86530 -10.80776 -10.73974 -10.46272 -10.06370 -9.92861 -9.79851 -9.36227 -9.28676 -8.99281 -8.44743 -8.30672 -6.09373 -4.13726 1.72172 2.00867 2.41112 2.51471 3.17917 3.28297 3.33574 3.35679 3.43324 3.62479 4.37681 4.38989 4.52908 4.56723 4.60073 4.74281 4.83519 4.85328 4.90584 4.96910 5.01859 5.04228 5.18820 5.25484 5.26758 5.32013 5.35001 5.39078 5.43184 5.51674 5.56730 5.58061 5.61791 5.78029 5.92979 6.02621 6.19834 6.27934 6.40249 6.46732 6.61395 6.84812 6.95825 7.35274 7.49653 7.63805 7.87630 7.93397 8.25011 8.92139 9.09659 9.51097 11.01667 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.002140 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.014471 B =13080.854753 C =13872.287175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.082 3.918 3 O -0.370 6.370 4 C 0.653 3.347 5 O -0.574 6.574 6 N -0.597 5.597 7 C 0.134 3.866 8 C 0.057 3.943 9 N -0.456 5.456 10 C 0.318 3.682 11 N -0.313 5.313 12 N -0.297 5.297 13 C 0.219 3.781 14 C -0.032 4.032 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.896 3.104 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 N -0.469 5.469 25 C 0.080 3.920 26 C 0.045 3.955 27 C 0.121 3.879 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.025 0.975 40 H 0.014 0.986 41 H 0.263 0.737 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 -19.374 15.583 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 O -0.284 6.284 4 C 0.408 3.592 5 O -0.463 6.463 6 N -0.338 5.338 7 C 0.013 3.987 8 C -0.071 4.071 9 N -0.182 5.182 10 C -0.038 4.038 11 N -0.157 5.157 12 N -0.136 5.136 13 C -0.049 4.049 14 C -0.072 4.072 15 C -0.006 4.006 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 N -0.162 5.162 25 C -0.063 4.063 26 C -0.083 4.083 27 C -0.002 4.002 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.120 0.880 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.647 -20.258 14.752 25.114 hybrid contribution -0.513 1.379 0.288 1.500 sum -2.160 -18.879 15.040 24.234 Atomic orbital electron populations 1.21836 0.92435 1.03141 1.03658 1.22969 0.94882 0.78588 1.02802 1.86224 1.21953 1.33304 1.86910 1.17940 0.81249 0.83836 0.76163 1.90992 1.59867 1.39257 1.56153 1.46966 1.07612 1.03082 1.76112 1.21839 0.77613 1.00173 0.99100 1.22474 0.98158 0.87762 0.98693 1.58521 1.04604 1.08787 1.46280 1.22086 1.06561 0.83334 0.91835 1.74506 1.18354 1.20024 1.02829 1.74053 1.20891 0.93990 1.24694 1.25660 0.98058 0.99480 0.81663 1.20473 1.03390 0.81410 1.01960 1.19063 0.89688 0.95358 0.96472 1.21098 0.98315 0.93693 1.43236 0.92295 1.25021 0.95141 0.98761 0.95359 1.69962 1.02895 1.36276 1.43973 0.86600 0.77555 0.84842 0.78679 1.20067 1.21284 1.20185 1.46161 1.49760 1.06123 1.14157 1.22025 1.01951 0.98297 0.84005 1.22631 0.86593 1.00351 0.98767 1.21850 0.94437 0.84846 0.99072 0.91339 0.89951 0.91430 0.91124 0.91173 0.87594 0.89905 0.88527 0.91862 0.91057 0.89172 0.95636 0.96815 0.92780 0.90413 0.88571 0.89333 0.92493 0.88887 0.87990 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16 2 C 0.08 0.63 6.19 37.16 0.23 0.86 16 3 O -0.37 -3.68 8.90 -40.32 -0.36 -4.03 16 4 C 0.65 7.57 8.44 54.05 0.46 8.03 16 5 O -0.57 -8.12 15.58 -19.28 -0.30 -8.42 16 6 N -0.60 -5.90 3.01 -178.28 -0.54 -6.44 16 7 C 0.13 1.22 6.60 -3.60 -0.02 1.19 16 8 C 0.06 0.62 5.23 -3.70 -0.02 0.60 16 9 N -0.46 -5.43 4.61 -174.25 -0.80 -6.24 16 10 C 0.32 5.05 6.69 -318.88 -2.13 2.92 16 11 N -0.31 -6.04 11.72 30.31 0.36 -5.69 16 12 N -0.30 -6.31 12.18 32.99 0.40 -5.91 16 13 C 0.22 4.21 7.32 -154.02 -1.13 3.08 16 14 C -0.03 -0.64 5.47 -27.89 -0.15 -0.79 16 15 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 16 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.81 -0.10 1.54 16 19 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 20 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 N -0.47 -7.48 3.21 -121.46 -0.39 -7.87 16 25 C 0.08 0.93 10.88 59.85 0.65 1.58 16 26 C 0.04 0.47 5.55 -3.73 -0.02 0.45 16 27 C 0.12 0.99 6.61 -3.63 -0.02 0.96 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 33 H 0.11 1.00 7.06 -51.93 -0.37 0.63 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16 36 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.07 1.24 7.98 -51.92 -0.41 0.83 16 38 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 44 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 47 H 0.10 0.76 6.98 -51.93 -0.36 0.39 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -34.70 398.38 -10.10 -44.80 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.86 Total: -3.04 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -2.33 Total: 6.33 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.24 Total: -57.47 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.66 Total: -12.46 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.70 -10.10 -44.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351095414.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.056 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds