Wall clock time and date at job start Tue Mar 31 2020 20:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45194 * 109.47340 * 2 1 4 4 C 1.34638 * 117.00214 * 179.97438 * 3 2 1 5 5 O 1.21514 * 119.99322 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00076 * 179.97438 * 4 3 2 7 7 C 1.47082 * 120.87981 * 180.02562 * 6 4 3 8 8 C 1.53239 * 108.52119 * 128.79588 * 7 6 4 9 9 N 1.46897 * 109.36464 * 53.81642 * 8 7 6 10 10 C 1.38575 * 110.99891 * 172.76030 * 9 8 7 11 11 N 1.31218 * 126.47685 * 36.37929 * 10 9 8 12 12 N 1.28524 * 109.86100 * 179.97438 * 11 10 9 13 13 C 1.30295 * 110.05604 * 359.97438 * 12 11 10 14 14 C 1.50697 * 126.34729 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47179 * 90.03133 * 14 13 12 16 16 C 1.50697 * 109.47179 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00369 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00196 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99453 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00383 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46805 * 60.00139 * 20 18 16 22 22 H 1.48497 * 109.47002 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47001 * 300.00483 * 20 18 16 24 24 N 1.36454 * 126.47105 * 216.05788 * 10 9 8 25 25 C 1.46503 * 127.13756 * 0.03632 * 24 10 9 26 26 C 1.46898 * 111.26621 * 296.93824 * 9 8 7 27 27 C 1.47076 * 120.88597 * 359.97438 * 6 4 3 28 28 H 1.09002 * 109.46622 * 60.00070 * 1 2 3 29 29 H 1.09002 * 109.47533 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47319 * 300.00828 * 1 2 3 31 31 H 1.08998 * 109.47319 * 239.99172 * 2 1 3 32 32 H 1.09010 * 109.46716 * 119.99635 * 2 1 3 33 33 H 1.09006 * 109.62855 * 9.08439 * 7 6 4 34 34 H 1.08998 * 109.62883 * 248.50556 * 7 6 4 35 35 H 1.09000 * 109.49511 * 173.79230 * 8 7 6 36 36 H 1.09001 * 109.49144 * 293.83992 * 8 7 6 37 37 H 1.09010 * 109.47073 * 210.03005 * 14 13 12 38 38 H 1.08999 * 109.47283 * 330.02633 * 14 13 12 39 39 H 1.08998 * 109.47078 * 299.99553 * 15 14 13 40 40 H 1.09001 * 109.47005 * 59.99895 * 15 14 13 41 41 H 0.96998 * 119.99436 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.46575 * 95.46112 * 25 24 10 43 43 H 1.08995 * 109.47330 * 215.45601 * 25 24 10 44 44 H 1.08998 * 109.47028 * 335.46503 * 25 24 10 45 45 H 1.09001 * 109.47633 * 303.09994 * 26 9 8 46 46 H 1.09001 * 109.50891 * 183.04700 * 26 9 8 47 47 H 1.09004 * 109.62523 * 350.92263 * 27 6 4 48 48 H 1.08999 * 109.62713 * 111.49484 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0889 0.5815 0.0005 6 7 3.8639 2.7907 0.0000 7 6 5.3189 3.0057 0.0001 8 6 5.6674 3.9770 -1.1328 9 7 4.8594 5.1961 -0.9950 10 6 5.2601 6.1627 -1.9036 11 7 5.6718 5.9556 -3.1322 12 7 5.9625 7.0764 -3.6900 13 6 5.7547 8.0570 -2.8576 14 6 5.9757 9.5224 -3.1307 15 6 4.6933 10.1346 -3.6978 16 6 4.9141 11.6002 -3.9704 17 1 5.8731 12.0502 -3.7598 18 6 3.8919 12.3667 -4.4887 19 7 2.7243 11.8186 -4.7456 20 14 4.1653 14.1835 -4.8259 21 1 5.2676 14.3443 -5.8079 22 1 2.9210 14.7773 -5.3776 23 1 4.5250 14.8731 -3.5608 24 7 5.2951 7.5102 -1.6916 25 6 4.9208 8.2231 -0.4676 26 6 3.4265 4.9040 -1.1338 27 6 2.9862 3.9708 -0.0016 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8294 2.0563 -0.1616 34 1 5.6261 3.4318 0.9551 35 1 6.7254 4.2339 -1.0791 36 1 5.4557 3.5068 -2.0931 37 1 6.2406 10.0291 -2.2026 38 1 6.7843 9.6397 -3.8522 39 1 4.4284 9.6280 -4.6259 40 1 3.8848 10.0173 -2.9763 41 1 2.0050 12.3579 -5.1099 42 1 5.8119 8.4064 0.1328 43 1 4.4566 9.1740 -0.7286 44 1 4.2159 7.6190 0.1035 45 1 3.2453 4.4211 -2.0941 46 1 2.8588 5.8330 -1.0811 47 1 1.9543 3.6593 -0.1643 48 1 3.0686 4.4898 0.9533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351095414.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:42 Heat of formation + Delta-G solvation = -11.406486 kcal Electronic energy + Delta-G solvation = -29363.948754 eV Core-core repulsion = 25261.981670 eV Total energy + Delta-G solvation = -4101.967084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.04328 -41.79201 -39.92144 -37.72909 -36.42419 -36.16754 -35.43610 -33.57821 -32.72591 -32.26644 -30.58305 -28.82267 -27.93908 -27.02134 -25.25945 -24.36360 -23.76318 -23.30256 -22.26409 -21.57858 -20.86592 -19.40190 -18.64420 -18.31447 -17.91163 -17.78017 -17.45226 -16.98860 -16.51440 -16.06325 -16.03437 -15.92205 -15.59383 -15.09126 -14.93285 -14.71863 -14.36735 -14.24649 -14.18271 -13.72412 -13.67843 -13.49647 -13.19644 -12.92486 -12.84428 -12.80530 -12.77849 -12.61241 -12.53857 -12.46075 -12.41075 -12.05859 -11.78766 -11.71447 -11.61416 -11.54066 -11.31766 -11.07701 -10.56110 -10.49367 -9.99773 -9.63794 -8.19550 -6.31511 0.67482 0.96386 1.23944 1.44609 1.47625 1.54987 1.62174 1.72703 2.42937 2.54120 2.74426 3.14930 3.44404 3.58863 3.71047 3.80646 3.89285 4.01277 4.03071 4.08590 4.13256 4.17523 4.24758 4.35125 4.40113 4.41954 4.54010 4.59630 4.65451 4.69325 4.74216 4.74929 4.80099 4.88020 4.91321 4.93866 5.04908 5.12896 5.19149 5.36341 5.43403 5.46196 5.51045 5.60416 5.79442 6.09295 6.15379 6.18510 6.84365 7.08641 7.38499 7.67616 8.92221 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.002140 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.014471 B =13080.854753 C =13872.287175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 O -0.370 6.370 4 C 0.650 3.350 5 O -0.605 6.605 6 N -0.597 5.597 7 C 0.143 3.857 8 C 0.061 3.939 9 N -0.441 5.441 10 C 0.338 3.662 11 N -0.351 5.351 12 N -0.335 5.335 13 C 0.204 3.796 14 C -0.016 4.016 15 C 0.043 3.957 16 C -0.539 4.539 17 H 0.073 0.927 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.260 1.260 24 N -0.464 5.464 25 C 0.072 3.928 26 C 0.046 3.954 27 C 0.130 3.870 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.040 0.960 37 H 0.100 0.900 38 H 0.087 0.913 39 H -0.019 1.019 40 H -0.002 1.002 41 H 0.263 0.737 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.034 0.966 46 H 0.099 0.901 47 H 0.113 0.887 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.126 -18.740 18.159 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 O -0.284 6.284 4 C 0.405 3.595 5 O -0.497 6.497 6 N -0.337 5.337 7 C 0.021 3.979 8 C -0.067 4.067 9 N -0.167 5.167 10 C -0.019 4.019 11 N -0.195 5.195 12 N -0.175 5.175 13 C -0.065 4.065 14 C -0.055 4.055 15 C 0.005 3.995 16 C -0.577 4.577 17 H 0.091 0.909 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.194 1.194 22 H -0.214 1.214 23 H -0.184 1.184 24 N -0.156 5.156 25 C -0.069 4.069 26 C -0.082 4.082 27 C 0.008 3.992 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.058 0.942 37 H 0.118 0.882 38 H 0.106 0.894 39 H -0.001 1.001 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.134 0.866 45 H 0.053 0.947 46 H 0.117 0.883 47 H 0.131 0.869 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.705 -19.612 17.355 26.243 hybrid contribution -0.550 1.075 -0.480 1.299 sum -2.254 -18.537 16.875 25.169 Atomic orbital electron populations 1.21843 0.90250 1.04500 1.03718 1.23226 0.96523 0.77620 1.02596 1.86239 1.20943 1.34636 1.86582 1.18125 0.81584 0.83928 0.75860 1.90968 1.60652 1.40364 1.57666 1.47104 1.08134 1.03100 1.75382 1.21828 0.77328 0.99450 0.99257 1.22481 0.98295 0.87440 0.98499 1.58800 1.05479 1.08395 1.44048 1.22467 1.04042 0.84130 0.91274 1.74422 1.20566 1.19777 1.04707 1.73940 1.22174 0.95053 1.26329 1.25388 0.99308 0.98922 0.82916 1.20168 1.00494 0.81956 1.02920 1.18829 0.91682 0.94777 0.94204 1.21570 0.98802 0.94644 1.42645 0.90902 1.25989 0.94812 1.03798 0.95152 1.70112 1.03962 1.38165 1.45189 0.85466 0.77356 0.78910 0.79115 1.19430 1.21422 1.18435 1.46332 1.48696 1.06147 1.14469 1.22388 1.03843 0.98020 0.82600 1.22701 0.85542 1.01085 0.98894 1.21935 0.94505 0.83706 0.99078 0.91617 0.87951 0.90935 0.91810 0.91000 0.87988 0.87367 0.88186 0.94185 0.88175 0.89410 1.00075 0.98391 0.92820 0.87759 0.89429 0.86649 0.94747 0.88257 0.86907 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 71.98 0.74 -0.49 16 2 C 0.07 1.07 6.19 71.98 0.45 1.52 16 3 O -0.37 -6.93 8.90 -55.47 -0.49 -7.43 16 4 C 0.65 14.42 8.44 129.79 1.10 15.52 16 5 O -0.60 -16.94 15.58 19.80 0.31 -16.63 16 6 N -0.60 -10.76 3.01 -948.38 -2.85 -13.61 16 7 C 0.14 2.33 6.60 86.35 0.57 2.90 16 8 C 0.06 1.26 5.23 86.38 0.45 1.72 16 9 N -0.44 -9.82 4.61 -705.21 -3.25 -13.07 16 10 C 0.34 10.54 6.69 260.11 1.74 12.29 16 11 N -0.35 -13.87 11.72 -58.01 -0.68 -14.55 16 12 N -0.34 -14.70 12.18 -49.54 -0.60 -15.30 16 13 C 0.20 7.90 7.32 137.64 1.01 8.91 16 14 C -0.02 -0.62 5.47 29.85 0.16 -0.46 16 15 C 0.04 2.20 4.95 29.85 0.15 2.35 16 16 C -0.54 -28.83 9.11 25.60 0.23 -28.60 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 18 C 0.00 0.03 5.46 84.65 0.46 0.49 16 19 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 20 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 N -0.46 -14.32 3.21 -538.19 -1.73 -16.05 16 25 C 0.07 1.49 10.88 127.77 1.39 2.88 16 26 C 0.05 0.89 5.55 86.37 0.48 1.37 16 27 C 0.13 1.79 6.61 86.33 0.57 2.36 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.10 1.83 7.06 -2.38 -0.02 1.81 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 36 H 0.04 1.03 8.09 -2.39 -0.02 1.01 16 37 H 0.10 3.32 7.98 -2.38 -0.02 3.30 16 38 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 39 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 40 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.09 2.01 8.07 -2.39 -0.02 1.99 16 44 H 0.12 1.75 8.10 -2.39 -0.02 1.73 16 45 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.10 1.86 8.09 -2.39 -0.02 1.84 16 47 H 0.11 1.39 6.98 -2.38 -0.02 1.37 16 48 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -77.73 398.38 3.46 -74.28 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.95 Total: 10.47 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 9.50 Total: 22.76 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -8.83 Total: -127.94 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.19 Total: -24.06 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -77.73 3.46 -74.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351095414.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.872 kcal (2) G-P(sol) polarization free energy of solvation -77.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds