Wall clock time and date at job start Tue Mar 31 2020 21:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46894 * 110.99953 * 2 1 4 4 C 1.46902 * 110.99679 * 123.95663 * 2 1 3 5 5 C 1.52998 * 109.47130 * 66.04921 * 4 2 1 6 6 N 1.46502 * 109.47206 * 179.97438 * 5 4 2 7 7 C 1.34961 * 125.97984 * 124.96789 * 6 5 4 8 8 C 1.35242 * 107.85990 * 180.02562 * 7 6 5 9 9 C 1.40403 * 107.86621 * 0.02562 * 8 7 6 10 10 N 1.40195 * 125.96938 * 180.02562 * 9 8 7 11 11 C 1.34768 * 120.00405 * 359.97438 * 10 9 8 12 12 O 1.21592 * 120.00285 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00253 * 180.02562 * 11 10 9 14 14 C 1.47431 * 125.64838 * 0.03316 * 13 11 10 15 15 C 1.54911 * 104.83149 * 204.08905 * 14 13 11 16 16 C 1.55159 * 101.58231 * 322.99065 * 15 14 13 17 17 O 1.42902 * 110.71589 * 277.13858 * 16 15 14 18 18 C 1.50692 * 110.72293 * 154.04526 * 16 15 14 19 19 H 1.08002 * 120.00061 * 359.97438 * 18 16 15 20 20 C 1.37878 * 120.00375 * 179.97438 * 18 16 15 21 21 N 1.31514 * 119.99875 * 359.97438 * 20 18 16 22 22 Si 1.86795 * 120.00254 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47116 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47394 * 120.00068 * 22 20 18 25 25 H 1.48501 * 109.47240 * 239.99719 * 22 20 18 26 26 C 1.47022 * 125.65091 * 179.72028 * 13 11 10 27 27 N 1.31205 * 108.05527 * 359.97438 * 9 8 7 28 28 H 1.09004 * 109.46848 * 296.04280 * 1 2 3 29 29 H 1.08997 * 109.47071 * 56.04099 * 1 2 3 30 30 H 1.09000 * 109.46805 * 176.04486 * 1 2 3 31 31 H 1.09000 * 109.47191 * 183.95327 * 3 2 1 32 32 H 1.08997 * 109.47820 * 303.95376 * 3 2 1 33 33 H 1.09008 * 109.46956 * 63.96121 * 3 2 1 34 34 H 1.08994 * 109.47668 * 306.04322 * 4 2 1 35 35 H 1.09008 * 109.46562 * 186.04371 * 4 2 1 36 36 H 1.09002 * 109.47610 * 59.99223 * 5 4 2 37 37 H 1.09008 * 109.46948 * 299.99213 * 5 4 2 38 38 H 1.07995 * 126.06975 * 0.02887 * 7 6 5 39 39 H 1.07999 * 126.07177 * 179.97438 * 8 7 6 40 40 H 0.97003 * 119.99956 * 180.02562 * 10 9 8 41 41 H 1.09001 * 110.36015 * 322.92290 * 14 13 11 42 42 H 1.08995 * 110.36974 * 85.24926 * 14 13 11 43 43 H 1.09002 * 111.00455 * 81.06072 * 15 14 13 44 44 H 1.08993 * 111.00345 * 204.87803 * 15 14 13 45 45 H 0.96705 * 113.99771 * 179.97438 * 17 16 15 46 46 H 0.96995 * 120.00039 * 180.02562 * 21 20 18 47 47 H 1.09009 * 109.88058 * 298.39816 * 26 13 11 48 48 H 1.08997 * 109.88104 * 59.55822 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6315 -2.2427 0.9702 6 7 2.1569 -3.0068 2.1044 7 6 1.4406 -3.8080 2.9206 8 6 2.2869 -4.3286 3.8381 9 6 3.5710 -3.8262 3.5737 10 7 4.7357 -4.1217 4.2959 11 6 4.6803 -4.9579 5.3513 12 8 3.6203 -5.4565 5.6770 13 7 5.8000 -5.2415 6.0459 14 6 7.1452 -4.7090 5.7623 15 6 8.1195 -5.7479 6.3715 16 6 7.3595 -6.1717 7.6562 17 8 7.5950 -5.2396 8.7134 18 6 7.7572 -7.5632 8.0764 19 1 8.4826 -8.1156 7.4974 20 6 7.1951 -8.1312 9.2000 21 7 6.3122 -7.4584 9.9053 22 14 7.6875 -9.8562 9.7204 23 1 8.6907 -10.3937 8.7665 24 1 8.2749 -9.8133 11.0837 25 1 6.4889 -10.7329 9.7254 26 6 5.8810 -6.1282 7.2159 27 7 3.4906 -3.0327 2.5319 28 1 -0.3633 0.4512 0.9234 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5899 1.9164 -0.8524 33 1 1.7045 1.8723 0.9234 34 1 1.5612 -0.3874 2.0628 35 1 3.0798 -0.6612 1.1756 36 1 2.0658 -2.6214 0.0449 37 1 0.5471 -2.3476 0.9322 38 1 0.3799 -3.9995 2.8531 39 1 2.0220 -5.0093 4.6336 40 1 5.5814 -3.7236 4.0364 41 1 7.3017 -4.6274 4.6866 42 1 7.2777 -3.7386 6.2405 43 1 8.2558 -6.5961 5.7006 44 1 9.0769 -5.2886 6.6168 45 1 7.1418 -5.4588 9.5392 46 1 5.9171 -7.8578 10.6959 47 1 5.2633 -5.7342 8.0230 48 1 5.5469 -7.1299 6.9457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365485009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:07 Heat of formation + Delta-G solvation = 29.193894 kcal Electronic energy + Delta-G solvation = -29045.782707 eV Core-core repulsion = 24945.576188 eV Total energy + Delta-G solvation = -4100.206519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.26046 -39.69718 -38.09246 -37.47059 -34.73753 -34.37807 -32.70746 -32.17767 -30.21435 -29.90388 -28.46359 -28.05089 -27.80216 -25.35001 -24.40119 -22.95296 -21.74678 -21.51508 -20.55082 -19.57894 -19.26001 -17.67659 -17.29080 -17.10867 -16.32546 -15.93448 -15.73759 -15.48523 -15.20337 -14.92311 -14.68760 -14.38775 -14.34223 -13.85778 -13.39396 -13.18739 -12.97624 -12.92042 -12.86493 -12.83813 -12.47737 -12.26273 -12.14897 -12.02951 -11.67430 -11.54370 -11.45159 -11.08322 -10.83830 -10.68185 -10.62209 -10.57020 -10.48505 -10.17869 -9.58043 -9.36907 -8.90789 -8.74720 -8.68960 -8.34901 -8.22369 -7.77424 -6.31134 -4.39552 1.89942 2.12919 2.88455 2.99649 3.20017 3.28871 3.32220 3.58389 3.77667 4.20933 4.26467 4.30285 4.57181 4.66763 4.83255 4.88192 4.91160 4.96508 5.02220 5.13733 5.24777 5.32825 5.39422 5.45322 5.48049 5.58018 5.66772 5.69328 5.80742 5.93343 5.99092 6.07017 6.39666 6.44998 6.47271 6.48819 6.69268 6.82792 6.88752 7.00833 7.12333 7.14438 7.26620 7.41066 7.72229 7.84969 7.99389 8.37256 8.64012 8.92288 9.29463 9.42005 10.76779 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.002002 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.314592 B =13979.824663 C =14492.414029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.546 5.546 3 C 0.026 3.974 4 C 0.043 3.957 5 C 0.147 3.853 6 N -0.376 5.376 7 C 0.057 3.943 8 C -0.260 4.260 9 C 0.328 3.672 10 N -0.651 5.651 11 C 0.723 3.277 12 O -0.573 6.573 13 N -0.621 5.621 14 C 0.098 3.902 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.586 6.586 18 C -0.536 4.536 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.120 3.880 27 N -0.333 5.333 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.040 0.960 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.174 0.826 39 H 0.175 0.825 40 H 0.408 0.592 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.387 0.613 46 H 0.271 0.729 47 H 0.065 0.935 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 13.275 -17.304 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.025 3.975 6 N -0.161 5.161 7 C -0.088 4.088 8 C -0.291 4.291 9 C 0.071 3.929 10 N -0.303 5.303 11 C 0.425 3.575 12 O -0.449 6.449 13 N -0.358 5.358 14 C -0.025 4.025 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.396 6.396 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.534 5.534 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.002 4.002 27 N -0.163 5.163 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.191 0.809 39 H 0.192 0.808 40 H 0.244 0.756 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.239 0.761 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.309 13.742 -18.632 24.953 hybrid contribution -0.537 -1.028 1.872 2.202 sum -9.846 12.714 -16.760 23.227 Atomic orbital electron populations 1.22515 0.87322 1.02458 1.00901 1.61915 1.08069 1.14408 1.42626 1.22381 1.01123 0.88086 1.00663 1.22385 1.02096 0.92421 0.91672 1.21532 0.98666 0.90463 0.86882 1.48000 1.04764 1.37771 1.25520 1.22556 0.98694 0.95093 0.92479 1.21954 0.90527 1.10563 1.06037 1.18888 0.87557 0.94931 0.91490 1.41814 1.08673 1.49167 1.30642 1.15260 0.83954 0.79420 0.78915 1.90816 1.27794 1.56335 1.69961 1.47956 1.05829 1.49394 1.32623 1.22351 0.82933 0.98453 0.98772 1.22737 0.97729 0.97435 0.97458 1.19500 0.87340 0.88163 0.84226 1.86076 1.75776 1.52701 1.25083 1.21549 1.25370 0.99447 1.11085 0.91359 1.25082 0.93808 0.98516 0.95895 1.69577 1.28061 1.38133 1.17677 0.86327 0.78525 0.83406 0.78528 1.19573 1.20744 1.20736 1.23016 1.01391 0.91767 0.84000 1.77269 0.96676 1.26222 1.16168 0.95338 0.91029 0.91113 0.91001 0.91055 0.95446 0.94126 0.89072 0.89163 0.88831 0.80928 0.80806 0.75625 0.92341 0.91559 0.90415 0.90362 0.76124 0.91904 0.91682 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.32 60.07 0.56 0.65 16 2 N -0.55 -4.00 5.02 -251.25 -1.26 -5.27 16 3 C 0.03 0.16 9.57 60.06 0.57 0.74 16 4 C 0.04 0.37 5.14 -3.82 -0.02 0.35 16 5 C 0.15 1.24 6.43 -4.04 -0.03 1.21 16 6 N -0.38 -4.58 3.68 -61.38 -0.23 -4.81 16 7 C 0.06 0.69 11.44 -17.24 -0.20 0.49 16 8 C -0.26 -4.19 9.61 -39.83 -0.38 -4.58 16 9 C 0.33 5.50 8.11 -154.37 -1.25 4.25 16 10 N -0.65 -10.95 5.41 -15.51 -0.08 -11.03 16 11 C 0.72 14.62 8.46 -86.93 -0.74 13.89 16 12 O -0.57 -13.18 13.80 5.29 0.07 -13.10 16 13 N -0.62 -12.62 3.33 -176.23 -0.59 -13.20 16 14 C 0.10 1.67 6.56 -2.52 -0.02 1.66 16 15 C -0.12 -2.23 6.23 -24.58 -0.15 -2.38 16 16 C 0.25 5.88 0.86 -89.94 -0.08 5.80 16 17 O -0.59 -14.54 13.07 -35.23 -0.46 -15.00 16 18 C -0.54 -13.74 8.12 -34.44 -0.28 -14.02 16 19 H 0.07 1.72 7.76 -52.49 -0.41 1.32 16 20 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 21 N -0.90 -23.46 10.97 55.43 0.61 -22.85 16 22 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.12 2.85 5.54 -3.06 -0.02 2.83 16 27 N -0.33 -5.04 12.43 31.44 0.39 -4.65 16 28 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.07 0.32 6.47 -51.93 -0.34 -0.01 16 31 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.03 0.17 8.14 -51.92 -0.42 -0.25 16 34 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.09 0.92 8.06 -51.92 -0.42 0.51 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.55 6.48 -51.92 -0.34 0.21 16 38 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.17 3.15 5.91 -52.49 -0.31 2.84 16 40 H 0.41 5.82 7.30 -40.82 -0.30 5.53 16 41 H 0.06 0.80 7.30 -51.93 -0.38 0.42 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.44 8.03 -51.93 -0.42 1.03 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 45 H 0.39 9.92 6.98 45.56 0.32 10.24 16 46 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 47 H 0.06 1.68 8.07 -51.92 -0.42 1.27 16 48 H 0.07 1.72 7.82 -51.93 -0.41 1.32 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -30.67 388.97 -9.59 -40.25 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -6.77 Total: 16.03 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -2.12 Total: 12.59 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -1.16 Total: -61.81 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.39 Total: -28.10 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.67 -9.59 -40.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365485009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.448 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds