Wall clock time and date at job start Tue Mar 31 2020 21:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46894 * 110.99953 * 2 1 4 4 C 1.46902 * 110.99679 * 123.95663 * 2 1 3 5 5 C 1.52998 * 109.47130 * 66.04921 * 4 2 1 6 6 N 1.46502 * 109.47206 * 179.97438 * 5 4 2 7 7 C 1.34961 * 125.97984 * 124.96789 * 6 5 4 8 8 C 1.35242 * 107.85990 * 180.02562 * 7 6 5 9 9 C 1.40403 * 107.86621 * 0.02562 * 8 7 6 10 10 N 1.40195 * 125.96938 * 180.02562 * 9 8 7 11 11 C 1.34768 * 120.00405 * 359.97438 * 10 9 8 12 12 O 1.21592 * 120.00285 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00253 * 180.02562 * 11 10 9 14 14 C 1.47431 * 125.64838 * 0.03316 * 13 11 10 15 15 C 1.54911 * 104.83149 * 204.08905 * 14 13 11 16 16 C 1.55159 * 101.58231 * 322.99065 * 15 14 13 17 17 O 1.42902 * 110.71589 * 277.13858 * 16 15 14 18 18 C 1.50692 * 110.72293 * 154.04526 * 16 15 14 19 19 H 1.08002 * 120.00061 * 359.97438 * 18 16 15 20 20 C 1.37878 * 120.00375 * 179.97438 * 18 16 15 21 21 N 1.31514 * 119.99875 * 359.97438 * 20 18 16 22 22 Si 1.86795 * 120.00254 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47116 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47394 * 120.00068 * 22 20 18 25 25 H 1.48501 * 109.47240 * 239.99719 * 22 20 18 26 26 C 1.47022 * 125.65091 * 179.72028 * 13 11 10 27 27 N 1.31205 * 108.05527 * 359.97438 * 9 8 7 28 28 H 1.09004 * 109.46848 * 296.04280 * 1 2 3 29 29 H 1.08997 * 109.47071 * 56.04099 * 1 2 3 30 30 H 1.09000 * 109.46805 * 176.04486 * 1 2 3 31 31 H 1.09000 * 109.47191 * 183.95327 * 3 2 1 32 32 H 1.08997 * 109.47820 * 303.95376 * 3 2 1 33 33 H 1.09008 * 109.46956 * 63.96121 * 3 2 1 34 34 H 1.08994 * 109.47668 * 306.04322 * 4 2 1 35 35 H 1.09008 * 109.46562 * 186.04371 * 4 2 1 36 36 H 1.09002 * 109.47610 * 59.99223 * 5 4 2 37 37 H 1.09008 * 109.46948 * 299.99213 * 5 4 2 38 38 H 1.07995 * 126.06975 * 0.02887 * 7 6 5 39 39 H 1.07999 * 126.07177 * 179.97438 * 8 7 6 40 40 H 0.97003 * 119.99956 * 180.02562 * 10 9 8 41 41 H 1.09001 * 110.36015 * 322.92290 * 14 13 11 42 42 H 1.08995 * 110.36974 * 85.24926 * 14 13 11 43 43 H 1.09002 * 111.00455 * 81.06072 * 15 14 13 44 44 H 1.08993 * 111.00345 * 204.87803 * 15 14 13 45 45 H 0.96705 * 113.99771 * 179.97438 * 17 16 15 46 46 H 0.96995 * 120.00039 * 180.02562 * 21 20 18 47 47 H 1.09009 * 109.88058 * 298.39816 * 26 13 11 48 48 H 1.08997 * 109.88104 * 59.55822 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6315 -2.2427 0.9702 6 7 2.1569 -3.0068 2.1044 7 6 1.4406 -3.8080 2.9206 8 6 2.2869 -4.3286 3.8381 9 6 3.5710 -3.8262 3.5737 10 7 4.7357 -4.1217 4.2959 11 6 4.6803 -4.9579 5.3513 12 8 3.6203 -5.4565 5.6770 13 7 5.8000 -5.2415 6.0459 14 6 7.1452 -4.7090 5.7623 15 6 8.1195 -5.7479 6.3715 16 6 7.3595 -6.1717 7.6562 17 8 7.5950 -5.2396 8.7134 18 6 7.7572 -7.5632 8.0764 19 1 8.4826 -8.1156 7.4974 20 6 7.1951 -8.1312 9.2000 21 7 6.3122 -7.4584 9.9053 22 14 7.6875 -9.8562 9.7204 23 1 8.6907 -10.3937 8.7665 24 1 8.2749 -9.8133 11.0837 25 1 6.4889 -10.7329 9.7254 26 6 5.8810 -6.1282 7.2159 27 7 3.4906 -3.0327 2.5319 28 1 -0.3633 0.4512 0.9234 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5899 1.9164 -0.8524 33 1 1.7045 1.8723 0.9234 34 1 1.5612 -0.3874 2.0628 35 1 3.0798 -0.6612 1.1756 36 1 2.0658 -2.6214 0.0449 37 1 0.5471 -2.3476 0.9322 38 1 0.3799 -3.9995 2.8531 39 1 2.0220 -5.0093 4.6336 40 1 5.5814 -3.7236 4.0364 41 1 7.3017 -4.6274 4.6866 42 1 7.2777 -3.7386 6.2405 43 1 8.2558 -6.5961 5.7006 44 1 9.0769 -5.2886 6.6168 45 1 7.1418 -5.4588 9.5392 46 1 5.9171 -7.8578 10.6959 47 1 5.2633 -5.7342 8.0230 48 1 5.5469 -7.1299 6.9457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365485009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:05 Heat of formation + Delta-G solvation = 6.223290 kcal Electronic energy + Delta-G solvation = -29046.778787 eV Core-core repulsion = 24945.576188 eV Total energy + Delta-G solvation = -4101.202599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.41890 -41.21362 -39.25239 -38.60520 -36.17978 -36.04780 -34.15883 -33.71372 -31.73729 -31.09922 -29.68857 -29.25502 -28.50360 -27.10204 -25.32789 -24.44339 -22.75664 -22.50983 -21.65200 -21.29560 -20.66404 -19.27273 -18.88405 -18.36187 -17.47039 -17.19419 -16.88523 -16.62689 -16.43402 -16.16565 -16.10789 -15.72847 -15.27789 -14.97148 -14.79023 -14.74862 -14.52125 -14.17421 -14.03731 -13.86637 -13.47313 -13.42618 -13.34083 -13.08374 -12.86838 -12.65334 -12.60362 -12.53307 -12.31331 -12.25221 -12.18276 -12.09375 -11.81970 -11.64235 -11.21940 -11.16190 -10.63836 -10.30024 -9.92994 -9.69700 -9.45360 -9.12113 -8.26430 -6.41868 0.81359 0.96530 1.41765 1.45263 1.55708 1.58775 1.79619 2.30167 2.38727 2.80030 3.00204 3.04481 3.56685 3.78701 3.90909 3.93297 4.07812 4.13839 4.15022 4.24079 4.32407 4.34482 4.47131 4.54826 4.61708 4.63770 4.66610 4.69852 4.80899 4.84382 4.86954 4.98921 5.01154 5.04719 5.08872 5.12100 5.29250 5.35818 5.48443 5.72360 5.76813 5.84199 5.90872 5.97906 6.06028 6.16324 6.56777 6.65938 6.96225 7.30124 7.35983 7.39737 8.80136 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.002002 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.314592 B =13979.824663 C =14492.414029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.552 5.552 3 C 0.024 3.976 4 C 0.051 3.949 5 C 0.142 3.858 6 N -0.365 5.365 7 C 0.087 3.913 8 C -0.303 4.303 9 C 0.302 3.698 10 N -0.637 5.637 11 C 0.722 3.278 12 O -0.607 6.607 13 N -0.625 5.625 14 C 0.101 3.899 15 C -0.110 4.110 16 C 0.233 3.767 17 O -0.589 6.589 18 C -0.555 4.555 19 H 0.069 0.931 20 C 0.025 3.975 21 N -0.917 5.917 22 Si 0.964 3.036 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.284 1.284 26 C 0.139 3.861 27 N -0.342 5.342 28 H 0.026 0.974 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.025 0.975 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.221 0.779 39 H 0.147 0.853 40 H 0.420 0.580 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.379 0.621 46 H 0.271 0.729 47 H 0.031 0.969 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 14.114 -19.820 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.277 5.277 3 C -0.124 4.124 4 C -0.078 4.078 5 C 0.022 3.978 6 N -0.149 5.149 7 C -0.059 4.059 8 C -0.334 4.334 9 C 0.047 3.953 10 N -0.289 5.289 11 C 0.423 3.577 12 O -0.486 6.486 13 N -0.362 5.362 14 C -0.020 4.020 15 C -0.147 4.147 16 C 0.192 3.808 17 O -0.398 6.398 18 C -0.593 4.593 19 H 0.087 0.913 20 C -0.175 4.175 21 N -0.557 5.557 22 Si 0.790 3.210 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.210 1.210 26 C 0.016 3.984 27 N -0.173 5.173 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.238 0.762 39 H 0.165 0.835 40 H 0.258 0.742 41 H 0.119 0.881 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.230 0.770 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.795 14.639 -21.213 27.572 hybrid contribution -0.489 -1.194 2.538 2.847 sum -10.284 13.444 -18.675 25.205 Atomic orbital electron populations 1.22611 0.85968 1.03547 1.01304 1.61950 1.09323 1.14730 1.41668 1.22425 1.00994 0.87831 1.01166 1.22210 1.00884 0.92786 0.91903 1.21891 1.00649 0.89742 0.85538 1.48366 1.03792 1.37111 1.25667 1.23084 1.00106 0.92570 0.90154 1.21862 0.91544 1.12446 1.07571 1.19074 0.87600 0.96217 0.92432 1.41451 1.09631 1.48252 1.29598 1.15336 0.83300 0.79611 0.79427 1.90804 1.29100 1.57684 1.71047 1.47854 1.07295 1.49212 1.31818 1.22518 0.80345 0.97772 1.01405 1.22729 0.98336 0.98446 0.95225 1.19723 0.87836 0.87704 0.85493 1.86066 1.75643 1.53069 1.25053 1.21871 1.25460 1.00595 1.11378 0.91262 1.25817 0.93816 1.01815 0.96093 1.69677 1.28700 1.39371 1.17907 0.85406 0.78056 0.79337 0.78232 1.18882 1.20345 1.21001 1.22510 1.01025 0.90615 0.84297 1.77215 0.98738 1.25780 1.15575 0.95490 0.90011 0.89791 0.91459 0.89654 0.95685 0.95036 0.91077 0.88613 0.85246 0.76206 0.83502 0.74187 0.88091 0.90707 0.89633 0.88922 0.77033 0.91916 0.95022 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.32 127.69 1.19 1.30 16 2 N -0.55 -6.82 5.02 -948.83 -4.76 -11.58 16 3 C 0.02 0.26 9.57 127.69 1.22 1.48 16 4 C 0.05 0.78 5.14 86.30 0.44 1.22 16 5 C 0.14 1.94 6.43 86.38 0.56 2.50 16 6 N -0.37 -8.03 3.68 -348.10 -1.28 -9.31 16 7 C 0.09 1.92 11.44 83.52 0.96 2.87 16 8 C -0.30 -9.78 9.61 22.11 0.21 -9.57 16 9 C 0.30 10.07 8.11 133.31 1.08 11.15 16 10 N -0.64 -21.33 5.41 -321.24 -1.74 -23.07 16 11 C 0.72 29.84 8.46 179.06 1.51 31.36 16 12 O -0.61 -29.31 13.80 -4.00 -0.06 -29.37 16 13 N -0.63 -25.71 3.33 -829.72 -2.76 -28.47 16 14 C 0.10 3.30 6.56 86.85 0.57 3.87 16 15 C -0.11 -4.10 6.23 31.99 0.20 -3.90 16 16 C 0.23 11.18 0.86 -10.35 -0.01 11.18 16 17 O -0.59 -29.78 13.07 -148.98 -1.95 -31.72 16 18 C -0.55 -28.79 8.12 25.60 0.21 -28.58 16 19 H 0.07 3.49 7.76 -2.91 -0.02 3.47 16 20 C 0.03 1.31 5.28 84.65 0.45 1.76 16 21 N -0.92 -49.52 10.97 21.45 0.24 -49.29 16 22 Si 0.96 41.84 29.54 68.60 2.03 43.86 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 C 0.14 6.87 5.54 86.73 0.48 7.35 16 27 N -0.34 -9.96 12.43 -54.44 -0.68 -10.64 16 28 H 0.03 0.23 8.14 -2.38 -0.02 0.21 16 29 H 0.08 0.51 8.12 -2.39 -0.02 0.49 16 30 H 0.08 0.44 6.47 -2.39 -0.02 0.42 16 31 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 33 H 0.02 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.03 0.54 8.12 -2.39 -0.02 0.52 16 35 H 0.07 1.37 8.06 -2.38 -0.02 1.35 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.13 0.90 6.48 -2.38 -0.02 0.88 16 38 H 0.22 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.15 5.59 5.91 -2.91 -0.02 5.57 16 40 H 0.42 11.49 7.30 -92.71 -0.68 10.81 16 41 H 0.10 2.46 7.30 -2.39 -0.02 2.45 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.09 3.05 8.03 -2.39 -0.02 3.03 16 44 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.38 20.17 6.98 -74.05 -0.52 19.66 16 46 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 47 H 0.03 1.74 8.07 -2.38 -0.02 1.72 16 48 H 0.04 2.03 7.82 -2.39 -0.02 2.01 16 Total: -1.00 -69.87 388.97 -2.09 -71.96 By element: Atomic # 1 Polarization: 43.84 SS G_CDS: -0.21 Total: 43.63 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: 9.07 Total: 33.99 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -10.98 Total: -132.36 kcal Atomic # 8 Polarization: -59.09 SS G_CDS: -2.00 Total: -61.09 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -69.87 -2.09 -71.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365485009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.182 kcal (2) G-P(sol) polarization free energy of solvation -69.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds