Wall clock time and date at job start Tue Mar 31 2020 20:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46536 * 2 1 4 4 C 1.46504 * 120.00050 * 269.99540 * 3 2 1 5 5 C 1.50705 * 109.46863 * 270.00602 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99726 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00239 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99920 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47193 * 90.00028 * 9 7 5 11 11 H 1.48503 * 109.47046 * 209.99925 * 9 7 5 12 12 H 1.48498 * 109.47336 * 330.00089 * 9 7 5 13 13 C 1.34784 * 120.00173 * 90.00246 * 3 2 1 14 14 O 1.21273 * 119.99901 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99664 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.46808 * 180.02562 * 15 13 3 17 17 C 1.46905 * 111.00138 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47028 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.47486 * 64.99811 * 18 17 16 20 20 C 1.53006 * 109.46623 * 184.99640 * 18 17 16 21 21 N 1.46500 * 109.46944 * 304.99380 * 18 17 16 22 22 C 1.34781 * 119.99732 * 155.00564 * 21 18 17 23 23 O 1.21566 * 119.99841 * 359.97438 * 22 21 18 24 24 C 1.47712 * 119.99904 * 179.97438 * 22 21 18 25 25 C 1.41498 * 126.51655 * 179.97438 * 24 22 21 26 26 C 1.35365 * 105.50253 * 180.02562 * 25 24 22 27 27 N 1.35034 * 107.22705 * 0.02562 * 26 25 24 28 28 H 0.97003 * 124.88260 * 180.02562 * 27 26 25 29 29 N 1.28469 * 110.23217 * 359.72082 * 27 26 25 30 30 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47715 * 300.00039 * 1 2 3 32 32 H 1.09005 * 109.47186 * 60.00702 * 1 2 3 33 33 H 1.08991 * 109.47274 * 240.00081 * 2 1 3 34 34 H 1.09001 * 109.46727 * 119.99146 * 2 1 3 35 35 H 1.08993 * 109.46986 * 30.00110 * 4 3 2 36 36 H 1.08992 * 109.47251 * 150.00593 * 4 3 2 37 37 H 0.96998 * 120.00217 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.47530 * 60.00377 * 15 13 3 39 39 H 1.09004 * 109.46769 * 300.00021 * 15 13 3 40 40 H 1.00906 * 110.99758 * 303.95061 * 16 15 13 41 41 H 1.08994 * 109.47305 * 59.99331 * 17 16 15 42 42 H 1.08998 * 109.46287 * 299.99779 * 17 16 15 43 43 H 1.09001 * 109.47002 * 179.97438 * 20 18 17 44 44 H 1.08993 * 109.46955 * 300.00075 * 20 18 17 45 45 H 1.09000 * 109.47050 * 59.99904 * 20 18 17 46 46 H 0.96998 * 120.00364 * 335.00076 * 21 18 17 47 47 H 1.08001 * 127.24986 * 0.02562 * 25 24 22 48 48 H 1.08006 * 126.38441 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 5.3912 2.1835 -3.2573 9 14 3.0123 3.4340 -3.9299 10 1 3.1146 4.8546 -3.5092 11 1 3.4059 3.3107 -5.3565 12 1 1.6129 2.9671 -3.7603 13 6 2.2428 2.0167 1.1672 14 8 2.6474 3.1599 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2066 3.5888 17 6 2.0756 1.5463 4.8802 18 6 2.4173 2.5127 6.0161 19 1 1.7279 3.3566 5.9951 20 6 2.2942 1.7869 7.3575 21 7 3.7892 2.9984 5.8479 22 6 4.1539 4.1837 6.3759 23 8 3.3443 4.8498 6.9913 24 6 5.5372 4.6733 6.2068 25 6 6.0660 5.8897 6.6995 26 6 7.3601 5.9086 6.3028 27 7 7.5840 4.7689 5.6142 28 1 8.4317 4.5204 5.2133 29 7 6.5148 4.0580 5.5719 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5137 0.8901 35 1 1.5817 1.6877 -2.0284 36 1 2.0954 3.1410 -1.1385 37 1 5.7171 2.5734 -4.0836 38 1 2.6211 0.4188 2.5303 39 1 0.9431 1.0126 2.5298 40 1 3.2573 2.5447 3.5221 41 1 2.7067 0.6608 4.9548 42 1 1.0284 1.2535 4.9545 43 1 2.5381 2.4751 8.1667 44 1 1.2736 1.4254 7.4825 45 1 2.9837 0.9429 7.3785 46 1 4.4351 2.4671 5.3566 47 1 5.5466 6.6442 7.2716 48 1 8.0792 6.6901 6.4997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001367655545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:51 Heat of formation + Delta-G solvation = 11.108671 kcal Electronic energy + Delta-G solvation = -29150.656618 eV Core-core repulsion = 25049.665865 eV Total energy + Delta-G solvation = -4100.990753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.79502 -39.72523 -39.14541 -36.88092 -35.37026 -34.17422 -32.70599 -32.32037 -31.25816 -30.48279 -30.31100 -28.56731 -26.84653 -24.71698 -23.94696 -22.96848 -21.98882 -21.85437 -21.05467 -20.28936 -18.79430 -18.39396 -17.33189 -16.92810 -16.59244 -16.24185 -15.94503 -15.79324 -15.48449 -14.76900 -14.49774 -14.31189 -14.09444 -13.88600 -13.68036 -13.54100 -13.46181 -13.36684 -13.04742 -12.58745 -12.50162 -12.34211 -12.16758 -11.99467 -11.84311 -11.64114 -11.36355 -11.19803 -11.07458 -10.95129 -10.71474 -10.48721 -10.19545 -10.14596 -9.65123 -9.54050 -9.41107 -9.18577 -8.97905 -8.58747 -8.36186 -7.69475 -6.09095 -4.07424 1.44137 1.95352 2.63718 3.09729 3.29648 3.35550 3.36739 3.38050 3.38789 3.64049 4.22727 4.32010 4.40111 4.63296 4.71151 4.95452 5.01984 5.07787 5.14669 5.21867 5.25681 5.35519 5.41340 5.42594 5.48058 5.48373 5.53478 5.56225 5.59034 5.75442 5.89078 5.97136 6.02524 6.14779 6.15239 6.39017 6.40338 6.68017 6.73807 6.88168 7.00839 7.33290 7.36586 7.38854 7.62071 7.67758 8.14948 8.28775 8.47350 8.92948 9.03268 9.51891 11.04327 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009910 B = 0.002964 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.823545 B = 9443.572093 C =11589.235399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.042 3.958 16 N -0.672 5.672 17 C 0.052 3.948 18 C 0.144 3.856 19 H 0.100 0.900 20 C -0.162 4.162 21 N -0.712 5.712 22 C 0.611 3.389 23 O -0.532 6.532 24 C -0.015 4.015 25 C -0.180 4.180 26 C -0.016 4.016 27 N -0.380 5.380 28 H 0.448 0.552 29 N -0.255 5.255 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.353 0.647 41 H 0.035 0.965 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.404 0.596 47 H 0.163 0.837 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 -2.424 20.873 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.096 3.904 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.292 3.708 14 O -0.401 6.401 15 C -0.090 4.090 16 N -0.306 5.306 17 C -0.078 4.078 18 C 0.039 3.961 19 H 0.118 0.882 20 C -0.221 4.221 21 N -0.363 5.363 22 C 0.395 3.605 23 O -0.407 6.407 24 C -0.176 4.176 25 C -0.208 4.208 26 C -0.160 4.160 27 N -0.095 5.095 28 H 0.292 0.708 29 N -0.092 5.092 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.173 0.827 41 H 0.053 0.947 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.239 0.761 47 H 0.180 0.820 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.910 -1.931 20.560 20.738 hybrid contribution 1.038 0.200 -0.782 1.315 sum -0.872 -1.731 19.778 19.873 Atomic orbital electron populations 1.22238 0.96758 1.01517 1.02331 1.21430 0.93423 0.83926 1.02974 1.47932 1.64531 1.13327 1.06973 1.19624 0.97186 0.93433 0.80114 1.21333 0.95381 1.32811 1.07048 0.90883 1.24852 0.94998 0.95792 0.97372 1.69893 1.15158 1.45128 1.23573 0.86849 0.81506 0.81648 0.79687 1.19897 1.21101 1.19043 1.20206 0.78661 0.87074 0.84885 1.90686 1.44781 1.17792 1.86890 1.21896 1.02449 0.94341 0.90360 1.60087 1.33095 1.37451 0.99930 1.22304 1.02194 0.94716 0.88616 1.21070 0.83380 0.97759 0.93851 0.88171 1.22157 1.02272 1.00600 0.97026 1.45857 1.13220 1.20940 1.56321 1.16804 0.84599 0.80600 0.78473 1.90783 1.51342 1.56845 1.41694 1.21980 0.94406 0.96554 1.04637 1.21803 0.93780 0.99086 1.06144 1.22966 0.99012 0.93114 1.00936 1.43377 1.11388 1.14445 1.40260 0.70787 1.73549 0.93789 1.22074 1.19826 0.92033 0.92894 0.92209 0.89784 0.91574 0.95313 0.94607 0.92608 0.92733 0.88574 0.82700 0.94652 0.89261 0.91710 0.91294 0.92465 0.76112 0.81964 0.79751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.14 2.46 -175.06 -0.43 -12.57 16 4 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 5 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 6 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 9 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.51 10.33 7.71 -10.98 -0.08 10.25 16 14 O -0.53 -13.23 15.78 5.56 0.09 -13.15 16 15 C 0.04 0.61 4.72 -4.98 -0.02 0.58 16 16 N -0.67 -9.58 6.12 -115.06 -0.70 -10.29 16 17 C 0.05 0.52 5.30 -3.82 -0.02 0.50 16 18 C 0.14 1.56 2.88 -67.93 -0.20 1.36 16 19 H 0.10 1.30 7.58 -51.93 -0.39 0.91 16 20 C -0.16 -1.41 9.48 37.16 0.35 -1.05 16 21 N -0.71 -8.49 4.35 -54.79 -0.24 -8.73 16 22 C 0.61 8.64 7.79 -12.39 -0.10 8.54 16 23 O -0.53 -8.84 16.59 5.31 0.09 -8.75 16 24 C -0.01 -0.19 7.13 -82.77 -0.59 -0.78 16 25 C -0.18 -1.94 10.81 -39.37 -0.43 -2.37 16 26 C -0.02 -0.12 12.02 -17.17 -0.21 -0.33 16 27 N -0.38 -3.22 6.83 30.47 0.21 -3.01 16 28 H 0.45 2.20 8.96 -190.44 -1.71 0.49 16 29 N -0.26 -3.04 11.92 33.42 0.40 -2.64 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 35 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 36 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.05 0.70 7.40 -51.93 -0.38 0.31 16 39 H 0.10 1.18 7.18 -51.93 -0.37 0.81 16 40 H 0.35 5.56 7.28 -39.29 -0.29 5.27 16 41 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.40 4.49 7.88 -40.82 -0.32 4.17 16 47 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 48 H 0.19 0.65 8.06 -52.48 -0.42 0.22 16 LS Contribution 401.34 15.07 6.05 6.05 Total: -1.00 -38.67 401.34 -8.55 -47.21 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.71 Total: 7.34 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -1.40 Total: 8.38 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: 0.01 Total: -64.22 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.18 Total: -21.90 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.67 -8.55 -47.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001367655545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.322 kcal (2) G-P(sol) polarization free energy of solvation -38.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds